ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal40e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL844142.5| Mouse DNA sequence from clone RP23-355C24 on chr... 42 0.68
2gb|U70849.1| Caenorhabditis elegans cosmid F29B9, complete sequence 42 0.68
3gb|AC003019.1|AC003019 Mus musculus Chromosome 4 BAC clone BacB6... 42 0.68
4ref|NM_111876.3| Arabidopsis thaliana SCPL49; catalytic/ serine ... 40 2.7
5gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete s... 40 2.7
6gb|AC149296.1| Populus trichocarpa clone Pop1-012O23, complete s... 40 2.7
7gb|AC154746.2| Mus musculus BAC clone RP24-396N7 from chromosome... 40 2.7
8gb|AC116997.3| Mus musculus BAC clone RP23-8J15 from chromosome ... 40 2.7
9gb|AY149954.1| Arabidopsis thaliana At3g10410/F13M14_32 mRNA, co... 40 2.7
10gb|AY091767.1| Arabidopsis thaliana AT3g10410/F13M14_32 mRNA, co... 40 2.7
11gb|AC154441.3| Mus musculus BAC clone RP24-176O5 from chromosome... 40 2.7
12ref|XM_394614.2| PREDICTED: Apis mellifera similar to aldehyde d... 40 2.7
13gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13... 40 2.7
14dbj|AP005060.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 2.7
15gb|M81130.1|ATHCPYLP Arabidopsis thaliana carboxypeptidase Y-lik... 40 2.7

>emb|AL844142.5| Mouse DNA sequence from clone RP23-355C24 on chromosome 4, complete
             sequence
          Length = 121550

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 149   tattcttttagttctagagct 169
             |||||||||||||||||||||
Sbjct: 88620 tattcttttagttctagagct 88640



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>gb|U70849.1| Caenorhabditis elegans cosmid F29B9, complete sequence
          Length = 24784

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 137  aattttcttgaatattctttt 157
            |||||||||||||||||||||
Sbjct: 4808 aattttcttgaatattctttt 4828



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>gb|AC003019.1|AC003019 Mus musculus Chromosome 4 BAC clone BacB6, complete sequence
          Length = 138473

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 149    tattcttttagttctagagct 169
              |||||||||||||||||||||
Sbjct: 104839 tattcttttagttctagagct 104819



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>ref|NM_111876.3| Arabidopsis thaliana SCPL49; catalytic/ serine carboxypeptidase
           AT3G10410 (SCPL49) mRNA, complete cds
          Length = 1799

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  ttgtctgcaactctttgttc 41
           ||||||||||||||||||||
Sbjct: 980 ttgtctgcaactctttgttc 999



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>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence
          Length = 143392

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 138 attttcttgaatattcttttagttctag 165
           ||||||||||||||| ||||| ||||||
Sbjct: 173 attttcttgaatattattttatttctag 200



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>gb|AC149296.1| Populus trichocarpa clone Pop1-012O23, complete sequence
          Length = 123280

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 138    attttcttgaatattcttttagttctag 165
              ||||||||||||||| ||||| ||||||
Sbjct: 122076 attttcttgaatattattttatttctag 122103



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>gb|AC154746.2| Mus musculus BAC clone RP24-396N7 from chromosome 14, complete sequence
          Length = 184783

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 149   tattcttttagttctagagctagt 172
             |||||||||| |||||||||||||
Sbjct: 31745 tattcttttaattctagagctagt 31768



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>gb|AC116997.3| Mus musculus BAC clone RP23-8J15 from chromosome 1, complete sequence
          Length = 190712

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 151    ttcttttagttctagagctagtgg 174
              ||||||||||||||||||| ||||
Sbjct: 148447 ttcttttagttctagagctcgtgg 148424



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>gb|AY149954.1| Arabidopsis thaliana At3g10410/F13M14_32 mRNA, complete cds
          Length = 1551

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  ttgtctgcaactctttgttc 41
           ||||||||||||||||||||
Sbjct: 959 ttgtctgcaactctttgttc 978



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>gb|AY091767.1| Arabidopsis thaliana AT3g10410/F13M14_32 mRNA, complete cds
          Length = 1771

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  ttgtctgcaactctttgttc 41
           ||||||||||||||||||||
Sbjct: 980 ttgtctgcaactctttgttc 999



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>gb|AC154441.3| Mus musculus BAC clone RP24-176O5 from chromosome 13, complete sequence
          Length = 169507

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   ttcttttagttctagagcta 170
             ||||||||||||||||||||
Sbjct: 34893 ttcttttagttctagagcta 34874



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>ref|XM_394614.2| PREDICTED: Apis mellifera similar to aldehyde dehydrogenase
           (LOC411140), mRNA
          Length = 1596

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  tgggcaaaatattgccagaa 87
           ||||||||||||||||||||
Sbjct: 377 tgggcaaaatattgccagaa 396



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>gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete
              sequence
          Length = 118107

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     ttgtctgcaactctttgttc 41
              ||||||||||||||||||||
Sbjct: 110883 ttgtctgcaactctttgttc 110902



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>dbj|AP005060.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-637N19, complete
            sequence
          Length = 107942

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 106  atgaaaacaacaaaggtaaa 125
            ||||||||||||||||||||
Sbjct: 4997 atgaaaacaacaaaggtaaa 5016



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>gb|M81130.1|ATHCPYLP Arabidopsis thaliana carboxypeptidase Y-like protein gene, complete
            cds
          Length = 3830

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   ttgtctgcaactctttgttc 41
            ||||||||||||||||||||
Sbjct: 2217 ttgtctgcaactctttgttc 2236


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,644,095
Number of Sequences: 3902068
Number of extensions: 2644095
Number of successful extensions: 190819
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 190792
Number of HSP's gapped (non-prelim): 27
length of query: 213
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 191
effective length of database: 17,147,199,772
effective search space: 3275115156452
effective search space used: 3275115156452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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