ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal40e06 |
|---|---|
| Clone Library Name | barley_pub |
>Y1829_MYCTU (Q50604) Hypothetical protein Rv1829/MT1877| Length = 164 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/83 (26%), Positives = 45/83 (54%) Frame = -3 Query: 610 PRPTIYNVVKEMTEMMGYTVRLVRITEMVHDAYYSRLYLAKTGNEEEVISFDLKPSDAIN 431 PRP +++++++ +G++++ VRI ++ +Y+ L + I +PSD++ Sbjct: 53 PRPLTHDLIRDLIAALGHSLKEVRIVDLQEGTFYADLIFDRN------IKVSARPSDSVA 106 Query: 430 IAFRCKVPIQVNKRIAYNNGLKV 362 IA R VPI V + + GL + Sbjct: 107 IALRVGVPIYVEEAVLAQAGLLI 129
>GT2D1_HUMAN (Q9UHL9) General transcription factor II-I repeat domain-containing| protein 1 (GTF2I repeat domain-containing protein 1) (Muscle TFII-I repeat domain-containing protein 1) (General transcription factor III) (Slow-muscle-fiber enhancer binding Length = 959 Score = 32.0 bits (71), Expect = 1.5 Identities = 21/61 (34%), Positives = 32/61 (52%) Frame = -3 Query: 523 HDAYYSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPT 344 +DA SR+ +A T E+ F+ K +A+ I + +VP KRI N G +I+ P Sbjct: 692 YDARLSRIDIANTLREQVQDLFNKKYGEALGIKYPVQVPY---KRIKSNPGSVIIEGLPP 748 Query: 343 G 341 G Sbjct: 749 G 749
>K2C4_HUMAN (P19013) Keratin, type II cytoskeletal 4 (Cytokeratin-4) (CK-4)| (Keratin-4) (K4) Length = 534 Score = 32.0 bits (71), Expect = 1.5 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 2/108 (1%) Frame = -3 Query: 601 TIYNVVKEMTEMMGYTVRLVRITEMVHDAYYS--RLYLAKTGNEEEVISFDLKPSDAINI 428 T +N++++ T T + E + + Y S R L GN++ + +LK Sbjct: 181 TKWNLLQQQT-----TTTSSKNLEPLFETYLSVLRKQLDTLGNDKGRLQSELKTMQDSVE 235 Query: 427 AFRCKVPIQVNKRIAYNNGLKVIQPKPTGSYVNSDQIQYARLDKPGDQ 284 F+ K ++NKR A N V++ +Y+N +++ A++D D+ Sbjct: 236 DFKTKYEEEINKRTAAENDFVVLKKDVDAAYLNKVELE-AKVDSLNDE 282
>NALP4_HUMAN (Q96MN2) NACHT-, LRR- and PYD-containing protein 4| (PYRIN-containing APAF1-like protein 4) (PAAD and NACHT-containing protein 2) (PYRIN and NACHT-containing protein 2) (Ribonuclease inhibitor 2) Length = 994 Score = 32.0 bits (71), Expect = 1.5 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 56 SYVHIHIVHLDVCRSFYFLGKGHYVHPHLAL 148 SYV +H+ + C + ++L K H HPH A+ Sbjct: 447 SYVFLHVCIQEFCAALFYLLKSHLDHPHPAV 477
>ION3_CARAU (P18520) Intermediate filament protein ON3| Length = 520 Score = 31.2 bits (69), Expect = 2.6 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Frame = -3 Query: 532 EMVHDAYYSRL--YLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 359 + + +AY + L L GN++ + DL + F+ K ++NKR N +I Sbjct: 155 DAMFEAYINNLRRQLDSLGNDKMKLEADLHNMQGLVEDFKNKYEDEINKRTECENDFVLI 214 Query: 358 QPKPTGSYVNSDQIQYARLDKPGDQPCFEAQEFD 257 + +Y+N +++ A+L+ D+ F Q F+ Sbjct: 215 KKDVDEAYMNKVELE-AKLESLSDEINFLRQIFE 247
>K2C8_BRARE (Q6NWF6) Keratin, type II cytoskeletal 8 (Cytokeratin-8) (CK-8)| (Keratin-8) (K8) Length = 520 Score = 30.0 bits (66), Expect = 5.8 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Frame = -3 Query: 532 EMVHDAYYSRL--YLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 359 + + +AY + L L GN++ + DL + F+ K ++NKR N +I Sbjct: 161 DAMFEAYIANLRRQLDSLGNDKMKLEADLHNMQGLVEDFKNKYEDEINKRTECENEFVLI 220 Query: 358 QPKPTGSYVNSDQIQYARLDKPGDQPCFEAQEFD 257 + +Y+N +++ A+L+ D+ F Q F+ Sbjct: 221 KKDVDEAYMNKVELE-AKLESLTDEINFLRQIFE 253
>WDR67_HUMAN (Q96DN5) WD-repeat protein 67| Length = 1066 Score = 29.6 bits (65), Expect = 7.6 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Frame = +2 Query: 113 GKGHYVHPHLALLYRVLFVCPEHEKAISVL--SSIFITFLNSSNKHAAHQIKLLGFKARL 286 G G Y + ++R L PE+ A S L + FLN K+ KLL R Sbjct: 421 GYGEYPTKYRMFIWRSLLQLPENHTAFSTLIDKGTHVAFLNLQKKYPIKSRKLLRVLQRT 480 Query: 287 VAGLVQSRVL 316 ++ L V+ Sbjct: 481 LSALAHWSVI 490
>UVRC_GEOSL (Q747I7) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 613 Score = 29.6 bits (65), Expect = 7.6 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -3 Query: 244 MLVAAVEERYKDAAQYRD 191 M AA +ERY+DAA+YRD Sbjct: 211 MAAAAADERYEDAARYRD 228
>K2C3_HUMAN (P12035) Keratin, type II cytoskeletal 3 (Cytokeratin-3) (CK-3)| (Keratin-3) (K3) (65 kDa cytokeratin) Length = 629 Score = 29.3 bits (64), Expect = 9.9 Identities = 22/85 (25%), Positives = 39/85 (45%) Frame = -3 Query: 511 YSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPTGSYV 332 Y R YL E + +LK + + F+ K ++NKR A N ++ +Y+ Sbjct: 257 YLRSYLDNILGERGRLDSELKNMEDLVEDFKKKYEDEINKRTAAENEFVTLKKDVDSAYM 316 Query: 331 NSDQIQYARLDKPGDQPCFEAQEFD 257 N ++Q A++D D+ F +D Sbjct: 317 NKVELQ-AKVDALIDEIDFLRTLYD 340
>ABCD1_MOUSE (P48410) ATP-binding cassette sub-family D member 1| (Adrenoleukodystrophy protein) (ALDP) Length = 736 Score = 29.3 bits (64), Expect = 9.9 Identities = 15/43 (34%), Positives = 25/43 (58%) Frame = -3 Query: 598 IYNVVKEMTEMMGYTVRLVRITEMVHDAYYSRLYLAKTGNEEE 470 I + KE+TE+ GYT R+ + ++ D + R +TG+ EE Sbjct: 402 IMSSYKEVTELAGYTARVYEMFQVFEDVKHCR--FKRTGDLEE 442 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,226,778 Number of Sequences: 219361 Number of extensions: 1859537 Number of successful extensions: 5301 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5300 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
