ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal40e01 |
|---|---|
| Clone Library Name | barley_pub |
>GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC| 1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain alpha-hydroxy acid oxidase 1) Length = 367 Score = 64.3 bits (155), Expect = 8e-11 Identities = 30/38 (78%), Positives = 34/38 (89%) Frame = -3 Query: 287 GVSNVLKMLRDEFELTMALSGCNSLADITRNHVVTEAD 174 GV VL+MLRDEFELTMALSGC SL++ITRNH+VTE D Sbjct: 322 GVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWD 359
>GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC| 1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain alpha-hydroxy acid oxidase 2) Length = 367 Score = 60.1 bits (144), Expect = 1e-09 Identities = 28/38 (73%), Positives = 32/38 (84%) Frame = -3 Query: 287 GVSNVLKMLRDEFELTMALSGCNSLADITRNHVVTEAD 174 GV VL+MLRDEFELTMALSGC SL +I+RNH+ TE D Sbjct: 322 GVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWD 359
>GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.1.3.15)| (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase) Length = 369 Score = 54.7 bits (130), Expect = 6e-08 Identities = 24/38 (63%), Positives = 31/38 (81%) Frame = -3 Query: 287 GVSNVLKMLRDEFELTMALSGCNSLADITRNHVVTEAD 174 GV VL+M+RDEFELTMALSGC SL +I+R+H+ + D Sbjct: 322 GVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359
>HAOX2_HUMAN (Q9NYQ3) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)| ((S)-2-hydroxy-acid oxidase, peroxisomal) (Long chain alpha-hydroxy acid oxidase) (Long-chain L-2-hydroxy acid oxidase) Length = 351 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/33 (54%), Positives = 24/33 (72%) Frame = -3 Query: 287 GVSNVLKMLRDEFELTMALSGCNSLADITRNHV 189 GV VL +L +EF +MAL+GC S+A+I RN V Sbjct: 314 GVKEVLNILTNEFHTSMALTGCRSVAEINRNLV 346
>HAOX1_MOUSE (Q9WU19) Hydroxyacid oxidase 1 (EC 1.1.3.15) (HAOX1) (Glycolate| oxidase) (GOX) Length = 370 Score = 35.4 bits (80), Expect = 0.038 Identities = 16/33 (48%), Positives = 24/33 (72%) Frame = -3 Query: 287 GVSNVLKMLRDEFELTMALSGCNSLADITRNHV 189 GV +VL++L++EF L MALSGC ++ I + V Sbjct: 328 GVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 360
>HAOX1_HUMAN (Q9UJM8) Hydroxyacid oxidase 1 (EC 1.1.3.15) (HAOX1) (Glycolate| oxidase) (GOX) Length = 370 Score = 35.4 bits (80), Expect = 0.038 Identities = 16/33 (48%), Positives = 24/33 (72%) Frame = -3 Query: 287 GVSNVLKMLRDEFELTMALSGCNSLADITRNHV 189 GV +VL++L++EF L MALSGC ++ I + V Sbjct: 328 GVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 360
>HAOX2_MOUSE (Q9NYQ2) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)| ((S)-2-hydroxy-acid oxidase, peroxisomal) (Medium chain alpha-hydroxy acid oxidase) (Medium-chain L-2-hydroxy acid oxidase) Length = 353 Score = 34.3 bits (77), Expect = 0.084 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = -3 Query: 287 GVSNVLKMLRDEFELTMALSGCNSLADIT 201 GV VL +L++E MALSGC S+A+I+ Sbjct: 316 GVKEVLDILKEELHTCMALSGCRSVAEIS 344
>LLDD_ACIAD (Q6FFS1) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 384 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = -3 Query: 287 GVSNVLKMLRDEFELTMALSGCNSLADITRNHVV 186 GVSN+L ++ E + M L+G ++ADI + +V Sbjct: 343 GVSNLLDLIDKEMRVAMTLTGAKTIADINESCLV 376
>HAOX2_RAT (Q07523) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)| ((S)-2-hydroxy-acid oxidase, peroxisomal) (Long chain alpha-hydroxy acid oxidase) (Long-chain L-2-hydroxy acid oxidase) Length = 352 Score = 29.6 bits (65), Expect = 2.1 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -3 Query: 287 GVSNVLKMLRDEFELTMALSGCNSLADIT 201 GV VL +L E M LSGC S+A+I+ Sbjct: 315 GVKEVLDILTAELHRCMTLSGCQSVAEIS 343
>TUP12_SCHPO (Q9UUG8) Transcriptional repressor tup12| Length = 586 Score = 29.6 bits (65), Expect = 2.1 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -2 Query: 141 WNQIESAPTSSPPLLIQDLHT*GHPCMIC 55 W + P PP+ +Q LHT H +IC Sbjct: 263 WTVTSNVPNKEPPISVQLLHTLEHTSVIC 291
>UL84_HCMVT (P29839) 65 kDa early nonstructural protein (UL84 protein)| Length = 587 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -1 Query: 157 RPACNLEPNRVGTYVLAAVIDPRLT 83 RPA +L P R G ++L +VID +LT Sbjct: 198 RPAFSLFPARPGCHILRSVIDQQLT 222
>UL84_HCMVA (P16727) 65 kDa early nonstructural protein (UL84 protein)| Length = 586 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -1 Query: 157 RPACNLEPNRVGTYVLAAVIDPRLT 83 RPA +L P R G ++L +VID +LT Sbjct: 197 RPAFSLFPARPGCHILRSVIDQQLT 221
>IDI2_METBF (Q46CL4) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 365 Score = 27.7 bits (60), Expect = 7.8 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -3 Query: 284 VSNVLKMLRDEFELTMALSGCNSLADITRNHVV 186 V VL + DEF + M L GC ++ D+ VV Sbjct: 307 VVRVLSRMLDEFRIAMFLCGCANIQDLRNAPVV 339 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,066,745 Number of Sequences: 219361 Number of extensions: 499292 Number of successful extensions: 1053 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1044 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1053 length of database: 80,573,946 effective HSP length: 71 effective length of database: 64,999,315 effective search space used: 1559983560 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
