ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal40d16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC145780.2| Oryza sativa (japonica cultivar-group) chromosome... 194 3e-46
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 194 3e-46
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 194 3e-46
4dbj|AK122147.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
5dbj|AK102932.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
6gb|BT017144.1| Zea mays clone EL01N0366F12.c mRNA sequence 74 6e-10
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 66 2e-07
9emb|AL732535.4|CNS08C9A Oryza sativa chromosome 12, . BAC OSJNBa... 66 2e-07
10gb|AC131129.4| Rattus norvegicus 17 BAC CH230-15O20 (Children's ... 44 0.57
11gb|AC162458.4| Mus musculus chromosome 19, clone RP24-140G9, com... 44 0.57
12gb|AC102779.6| Mus musculus chromosome 19, clone RP23-460A15, co... 44 0.57
13gb|AY142468.1| Alsophila spinulosa haplotype 2 tRNA-Leu (trnL) g... 42 2.2
14gb|AC153811.1| Homo sapiens chromosome 5 clone fa0925, complete ... 42 2.2
15emb|Z54218.1|CEF37B12 Caenorhabditis elegans Cosmid F37B12, comp... 42 2.2
16emb|CR759765.6| Zebrafish DNA sequence from clone DKEY-1F12 in l... 42 2.2
17emb|CR974458.2| Pig DNA sequence from clone CH242-29M17 on chrom... 42 2.2
18emb|BX284112.25| Zebrafish DNA sequence from clone DKEYP-75A7 in... 42 2.2
19gb|AC114316.2| Homo sapiens chromosome 5 clone RP11-348J24, comp... 42 2.2
20gb|AC104826.5| Homo sapiens BAC clone RP11-775M3 from 4, complet... 42 2.2
21gb|AC113420.2| Homo sapiens chromosome 5 clone RP11-586E1, compl... 42 2.2
22gb|AC025445.5| Homo sapiens chromosome 5 clone CTD-2049O17, comp... 42 2.2
23gb|AC138990.2| Homo sapiens chromosome 5 clone RP13-708P15, comp... 42 2.2
24dbj|AB090002.1| Alsophila spinulosa chloroplast DNA, trnL-trnF i... 42 2.2
25emb|AJ505922.1|ASP505922 Alsophila spinulosa chloroplast tRNA-Le... 42 2.2
26ref|NM_128594.2| Arabidopsis thaliana KIS (KIESEL); unfolded pro... 40 8.8
27gb|AC157899.5| Mus musculus chromosome 15, clone RP23-98F15, com... 40 8.8
28gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, co... 40 8.8
29gb|AC146391.4| Pan troglodytes BAC clone RP43-56L16 from 7, comp... 40 8.8
30gb|AC146232.2| Pan troglodytes BAC clone RP43-27C6 from 7, compl... 40 8.8
31gb|AC126802.4| Mus musculus BAC clone RP24-543J12 from chromosom... 40 8.8
32gb|AC124515.4| Mus musculus BAC clone RP23-381E19 from chromosom... 40 8.8
33ref|XM_851487.1| PREDICTED: Canis familiaris similar to Legumain... 40 8.8
34ref|XM_537355.2| PREDICTED: Canis familiaris similar to Legumain... 40 8.8
35gb|AC092647.2| Homo sapiens BAC clone RP11-419M24 from 7, comple... 40 8.8
36gb|AC118004.6| Mus musculus chromosome 16, clone RP23-212P2, com... 40 8.8
37gb|AY050952.1| Arabidopsis thaliana putative TCP1-chaperonin cof... 40 8.8
38gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 8.8
39gb|AC156575.3| Mus musculus BAC clone RP23-4P20 from chromosome ... 40 8.8
40emb|AL805927.4| Mouse DNA sequence from clone RP24-221D22 on chr... 40 8.8
41emb|CR860355.1| Pongo pygmaeus mRNA; cDNA DKFZp459A0313 (from cl... 40 8.8
42emb|CR855999.1| Human DNA sequence from clone XX-NCIH2171_12H10,... 40 8.8
43emb|CR855280.1| Human DNA sequence from clone XX-NCIH2171_1M02, ... 40 8.8
44gb|AC084346.3| Homo sapiens chromosome 8, clone RP3-388N13, comp... 40 8.8
45emb|BX465189.9| Zebrafish DNA sequence from clone RP71-47G15 in ... 40 8.8
46gb|U93215.3| Arabidopsis thaliana chromosome 2 BAC T6B20 genomic... 40 8.8
47gb|AC002338.3| Arabidopsis thaliana chromosome 2 clone T9D9 map ... 40 8.8
48gb|AC099669.2| Homo sapiens chromosome 3 clone RP11-944L7, compl... 40 8.8
49emb|AL845159.4| Mouse DNA sequence from clone RP23-263O22 on chr... 40 8.8
50gb|AC008491.6|AC008491 Homo sapiens chromosome 5 clone CTC-426L2... 40 8.8
51emb|BX821991.1|CNS0AA3F Arabidopsis thaliana Full-length cDNA Co... 40 8.8
52gb|AC011310.3|AC011310 Homo sapiens BAC clone CTD-2590C17 from 7... 40 8.8
53gb|AY085814.1| Arabidopsis thaliana clone 1853 mRNA, complete se... 40 8.8
54gb|AC018637.3|AC018637 Human Chromosome 7 clone RP11-175P8, comp... 40 8.8
55dbj|BS000233.1| Pan troglodytes chromosome 22 clone:CH251-445J22... 40 8.8
56dbj|AP001748.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.8
57gb|AC140264.2| Mus musculus BAC clone RP23-316F10 from 10, compl... 40 8.8
58gb|AC171736.1| Lycopersicon esculentum chromosome 11 clone C11HB... 40 8.8
59dbj|AP004282.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 8.8
60dbj|AP001631.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 8.8 
>gb|AC145780.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0069P02
             map near S13580, complete sequence
          Length = 88044

 Score =  194 bits (98), Expect = 3e-46
 Identities = 149/166 (89%)
 Strand = Plus / Minus

                                                                         
Query: 436   atggcctttggccgtccataatttagcaccatcacaaactcttccgcaggggagcctaca 495
             |||||||||||||| |||||| |||||||||| |||||||| |  |||||||||||||  
Sbjct: 30568 atggcctttggccgcccataagttagcaccattacaaactccttggcaggggagcctatc 30509

                                                                         
Query: 496   atggcctgtgttgcctgcggtgatcgccccctcagccacaactctactaaattgcgcaga 555
             |||| |||||||| ||| | |||||||||||||| ||||| |||||||||||||| ||| 
Sbjct: 30508 atggtctgtgttgtctgtgttgatcgccccctcaaccacacctctactaaattgcacagg 30449

                                                           
Query: 556   ggttgtgtagggttcactggctgcccgcagcaatttatttccacct 601
             ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 30448 ggttgtgtagggttcactggctgcccgcagcaatttatttcgacct 30403
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  194 bits (98), Expect = 3e-46
 Identities = 149/166 (89%)
 Strand = Plus / Plus

                                                                            
Query: 436      atggcctttggccgtccataatttagcaccatcacaaactcttccgcaggggagcctaca 495
                |||||||||||||| |||||| |||||||||| |||||||| |  |||||||||||||  
Sbjct: 24060917 atggcctttggccgcccataagttagcaccattacaaactccttggcaggggagcctatc 24060976

                                                                            
Query: 496      atggcctgtgttgcctgcggtgatcgccccctcagccacaactctactaaattgcgcaga 555
                |||| |||||||| ||| | |||||||||||||| ||||| |||||||||||||| ||| 
Sbjct: 24060977 atggtctgtgttgtctgtgttgatcgccccctcaaccacacctctactaaattgcacagg 24061036

                                                              
Query: 556      ggttgtgtagggttcactggctgcccgcagcaatttatttccacct 601
                ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 24061037 ggttgtgtagggttcactggctgcccgcagcaatttatttcgacct 24061082
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  194 bits (98), Expect = 3e-46
 Identities = 149/166 (89%)
 Strand = Plus / Plus

                                                                            
Query: 436      atggcctttggccgtccataatttagcaccatcacaaactcttccgcaggggagcctaca 495
                |||||||||||||| |||||| |||||||||| |||||||| |  |||||||||||||  
Sbjct: 23978386 atggcctttggccgcccataagttagcaccattacaaactccttggcaggggagcctatc 23978445

                                                                            
Query: 496      atggcctgtgttgcctgcggtgatcgccccctcagccacaactctactaaattgcgcaga 555
                |||| |||||||| ||| | |||||||||||||| ||||| |||||||||||||| ||| 
Sbjct: 23978446 atggtctgtgttgtctgtgttgatcgccccctcaaccacacctctactaaattgcacagg 23978505

                                                              
Query: 556      ggttgtgtagggttcactggctgcccgcagcaatttatttccacct 601
                ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 23978506 ggttgtgtagggttcactggctgcccgcagcaatttatttcgacct 23978551
to top
>dbj|AK122147.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138G15, full
            insert sequence
          Length = 3697

 Score =  101 bits (51), Expect = 3e-18
 Identities = 105/123 (85%)
 Strand = Plus / Minus

                                                                        
Query: 525  cctcagccacaactctactaaattgcgcagaggttgtgtagggttcactggctgcccgca 584
            ||||||||||  ||||| |||||||||||| |||||  | |||||||||||||| |||||
Sbjct: 3143 cctcagccaccgctctattaaattgcgcaggggttgaattgggttcactggctgaccgca 3084

                                                                        
Query: 585  gcaatttatttccacctcggactcacttgggagactgagtttctgcacgaggtacttttg 644
            |||  ||||||| ||||| | ||||||||| |||||||| ||||||| ||  ||||||||
Sbjct: 3083 gcagcttatttcaacctcagtctcacttggaagactgagcttctgcatgatatacttttg 3024

               
Query: 645  gat 647
            |||
Sbjct: 3023 gat 3021
to top
>dbj|AK102932.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114H15, full
           insert sequence
          Length = 1505

 Score =  101 bits (51), Expect = 3e-18
 Identities = 105/123 (85%)
 Strand = Plus / Minus

                                                                       
Query: 525 cctcagccacaactctactaaattgcgcagaggttgtgtagggttcactggctgcccgca 584
           ||||||||||  ||||| |||||||||||| |||||  | |||||||||||||| |||||
Sbjct: 947 cctcagccaccgctctattaaattgcgcaggggttgaattgggttcactggctgaccgca 888

                                                                       
Query: 585 gcaatttatttccacctcggactcacttgggagactgagtttctgcacgaggtacttttg 644
           |||  ||||||| ||||| | ||||||||| |||||||| ||||||| ||  ||||||||
Sbjct: 887 gcagcttatttcaacctcagtctcacttggaagactgagcttctgcatgatatacttttg 828

              
Query: 645 gat 647
           |||
Sbjct: 827 gat 825
to top
>gb|BT017144.1| Zea mays clone EL01N0366F12.c mRNA sequence
          Length = 1174

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 100/121 (82%)
 Strand = Plus / Minus

                                                                       
Query: 524 ccctcagccacaactctactaaattgcgcagaggttgtgtagggttcactggctgcccgc 583
           |||||||||||  ||| || || ||||||| ||||||   ||||||||| | ||||||||
Sbjct: 647 ccctcagccaccgctccaccaagttgcgcacaggttgcccagggttcacggtctgcccgc 588

                                                                       
Query: 584 agcaatttatttccacctcggactcacttgggagactgagtttctgcacgaggtactttt 643
           ||||  ||||||| |||||||| || ||| | |||||||| |||||||| | ||||||||
Sbjct: 587 agcagcttatttcgacctcggattcgcttagaagactgagcttctgcacaatgtactttt 528

            
Query: 644 g 644
           |
Sbjct: 527 g 527
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                            
Query: 525      cctcagccacaactctactaaattgcgcagaggttgtgtagggttcactggctgcccgca 584
                ||||||||||  ||||| |||||||||||| |||||  | |||||||||||||| |||||
Sbjct: 25281913 cctcagccaccgctctattaaattgcgcaggggttgaattgggttcactggctgaccgca 25281972

                                 
Query: 585      gcaatttatttccacct 601
                |||  ||||||| ||||
Sbjct: 25281973 gcagcttatttcaacct 25281989



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                   
Query: 597      cacctcggactcacttgggagactgagtttctgcacgaggtacttttggat 647
                |||||| | ||||||||| |||||||| ||||||| ||  |||||||||||
Sbjct: 25282334 cacctcagtctcacttggaagactgagcttctgcatgatatacttttggat 25282384
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                            
Query: 525      cctcagccacaactctactaaattgcgcagaggttgtgtagggttcactggctgcccgca 584
                ||||||||||  ||||| |||||||||||| |||||  | |||||||||||||| |||||
Sbjct: 25210089 cctcagccaccgctctattaaattgcgcaggggttgaattgggttcactggctgaccgca 25210148

                                 
Query: 585      gcaatttatttccacct 601
                |||  ||||||| ||||
Sbjct: 25210149 gcagcttatttcaacct 25210165



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                   
Query: 597      cacctcggactcacttgggagactgagtttctgcacgaggtacttttggat 647
                |||||| | ||||||||| |||||||| ||||||| ||  |||||||||||
Sbjct: 25210510 cacctcagtctcacttggaagactgagcttctgcatgatatacttttggat 25210560
to top
>emb|AL732535.4|CNS08C9A Oryza sativa chromosome 12, . BAC OSJNBa0035N13 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 158927

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                         
Query: 525   cctcagccacaactctactaaattgcgcagaggttgtgtagggttcactggctgcccgca 584
             ||||||||||  ||||| |||||||||||| |||||  | |||||||||||||| |||||
Sbjct: 55277 cctcagccaccgctctattaaattgcgcaggggttgaattgggttcactggctgaccgca 55218

                              
Query: 585   gcaatttatttccacct 601
             |||  ||||||| ||||
Sbjct: 55217 gcagcttatttcaacct 55201



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                
Query: 597   cacctcggactcacttgggagactgagtttctgcacgaggtacttttggat 647
             |||||| | ||||||||| |||||||| ||||||| ||  |||||||||||
Sbjct: 54856 cacctcagtctcacttggaagactgagcttctgcatgatatacttttggat 54806
to top
>gb|AC131129.4| Rattus norvegicus 17 BAC CH230-15O20 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 232401

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 220    aagaacaacaatacctaccaac 241
              ||||||||||||||||||||||
Sbjct: 209965 aagaacaacaatacctaccaac 209986
to top
>gb|AC162458.4| Mus musculus chromosome 19, clone RP24-140G9, complete sequence
          Length = 212469

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 228    caatacctaccaacatgaatga 249
              ||||||||||||||||||||||
Sbjct: 138939 caatacctaccaacatgaatga 138960
to top
>gb|AC102779.6| Mus musculus chromosome 19, clone RP23-460A15, complete sequence
          Length = 214504

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 228    caatacctaccaacatgaatga 249
              ||||||||||||||||||||||
Sbjct: 158079 caatacctaccaacatgaatga 158100
to top
>gb|AY142468.1| Alsophila spinulosa haplotype 2 tRNA-Leu (trnL) gene, partial
           sequence; trnL-trnF intergenic spacer, complete
           sequence; and tRNA-Phe (trnF) gene, partial sequence;
           chloroplast genes for chloroplast products
          Length = 1070

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 11  aggagtatccattaaaataca 31
           |||||||||||||||||||||
Sbjct: 570 aggagtatccattaaaataca 590
to top
>gb|AC153811.1| Homo sapiens chromosome 5 clone fa0925, complete sequence
          Length = 40008

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 243   tgaatgaatacatgaatatgt 263
             |||||||||||||||||||||
Sbjct: 32825 tgaatgaatacatgaatatgt 32805
to top
>emb|Z54218.1|CEF37B12 Caenorhabditis elegans Cosmid F37B12, complete sequence
          Length = 33950

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 133   tccctctctttatatccaatc 153
             |||||||||||||||||||||
Sbjct: 16493 tccctctctttatatccaatc 16513
to top
>emb|CR759765.6| Zebrafish DNA sequence from clone DKEY-1F12 in linkage group 17, complete
              sequence
          Length = 224482

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 581    cgcagcaatttatttccacct 601
              |||||||||||||||||||||
Sbjct: 215186 cgcagcaatttatttccacct 215206
to top
>emb|CR974458.2| Pig DNA sequence from clone CH242-29M17 on chromosome 17, complete
              sequence
          Length = 177939

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 161    catttttcatctatctttggt 181
              |||||||||||||||||||||
Sbjct: 156707 catttttcatctatctttggt 156687
to top
>emb|BX284112.25| Zebrafish DNA sequence from clone DKEYP-75A7 in linkage group 21,
              complete sequence
          Length = 216476

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 329    ctttcgacaacctcttccatt 349
              |||||||||||||||||||||
Sbjct: 206318 ctttcgacaacctcttccatt 206338
to top
>gb|AC114316.2| Homo sapiens chromosome 5 clone RP11-348J24, complete sequence
          Length = 187136

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 243  tgaatgaatacatgaatatgt 263
            |||||||||||||||||||||
Sbjct: 2026 tgaatgaatacatgaatatgt 2006
to top
>gb|AC104826.5| Homo sapiens BAC clone RP11-775M3 from 4, complete sequence
          Length = 138604

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 240    acatgaatgaatacatgaata 260
              |||||||||||||||||||||
Sbjct: 103993 acatgaatgaatacatgaata 104013
to top
>gb|AC113420.2| Homo sapiens chromosome 5 clone RP11-586E1, complete sequence
          Length = 176267

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 241   catgaatgaatacatgaatat 261
             |||||||||||||||||||||
Sbjct: 53458 catgaatgaatacatgaatat 53478
to top
>gb|AC025445.5| Homo sapiens chromosome 5 clone CTD-2049O17, complete sequence
          Length = 184635

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 241    catgaatgaatacatgaatat 261
              |||||||||||||||||||||
Sbjct: 179583 catgaatgaatacatgaatat 179603
to top
>gb|AC138990.2| Homo sapiens chromosome 5 clone RP13-708P15, complete sequence
          Length = 125439

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 243    tgaatgaatacatgaatatgt 263
              |||||||||||||||||||||
Sbjct: 116171 tgaatgaatacatgaatatgt 116191
to top
>dbj|AB090002.1| Alsophila spinulosa chloroplast DNA, trnL-trnF intergenic spacer
           region, haplotype:2
          Length = 1070

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 11  aggagtatccattaaaataca 31
           |||||||||||||||||||||
Sbjct: 570 aggagtatccattaaaataca 590
to top
>emb|AJ505922.1|ASP505922 Alsophila spinulosa chloroplast tRNA-Leu intron, exon 2 and trnL-F
           intergenic spacer, isolate s2
          Length = 1070

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 11  aggagtatccattaaaataca 31
           |||||||||||||||||||||
Sbjct: 570 aggagtatccattaaaataca 590
to top
>ref|NM_128594.2| Arabidopsis thaliana KIS (KIESEL); unfolded protein binding
           AT2G30410 (KIS) mRNA, complete cds
          Length = 715

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 ggaatcgaagaacaacaata 232
           ||||||||||||||||||||
Sbjct: 82  ggaatcgaagaacaacaata 63
to top
>gb|AC157899.5| Mus musculus chromosome 15, clone RP23-98F15, complete sequence
          Length = 199372

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 219   gaagaacaacaatacctaccaaca 242
             |||||||||||||||| |||||||
Sbjct: 53981 gaagaacaacaataccaaccaaca 54004
to top
>gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, complete sequence
          Length = 206675

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 219    gaagaacaacaatacctaccaaca 242
              |||||||||||||||| |||||||
Sbjct: 122063 gaagaacaacaataccaaccaaca 122086
to top
>gb|AC146391.4| Pan troglodytes BAC clone RP43-56L16 from 7, complete sequence
          Length = 155929

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   atgaatgaatacatgaatat 261
             ||||||||||||||||||||
Sbjct: 47481 atgaatgaatacatgaatat 47500
to top
>gb|AC146232.2| Pan troglodytes BAC clone RP43-27C6 from 7, complete sequence
          Length = 169663

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   catgaatgaatacatgaata 260
             ||||||||||||||||||||
Sbjct: 84757 catgaatgaatacatgaata 84776
to top
>gb|AC126802.4| Mus musculus BAC clone RP24-543J12 from chromosome 5, complete sequence
          Length = 154808

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    atgaatgaatacatgaatat 261
              ||||||||||||||||||||
Sbjct: 129036 atgaatgaatacatgaatat 129017
to top
>gb|AC124515.4| Mus musculus BAC clone RP23-381E19 from chromosome 13, complete
             sequence
          Length = 175354

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 218   cgaagaacaacaatacctaccaac 241
             ||||||||||||||||| ||||||
Sbjct: 91815 cgaagaacaacaataccaaccaac 91838
to top
>ref|XM_851487.1| PREDICTED: Canis familiaris similar to Legumain precursor
           (Asparaginyl endopeptidase) (Protease, cysteine 1),
           transcript variant 2 (LOC480232), mRNA
          Length = 2199

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 tctaaagatcatttttcatc 171
           ||||||||||||||||||||
Sbjct: 769 tctaaagatcatttttcatc 750
to top
>ref|XM_537355.2| PREDICTED: Canis familiaris similar to Legumain precursor
            (Asparaginyl endopeptidase) (Protease, cysteine 1),
            transcript variant 1 (LOC480232), mRNA
          Length = 3113

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tctaaagatcatttttcatc 171
            ||||||||||||||||||||
Sbjct: 1683 tctaaagatcatttttcatc 1664
to top
>gb|AC092647.2| Homo sapiens BAC clone RP11-419M24 from 7, complete sequence
          Length = 163891

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   catgaatgaatacatgaata 260
             ||||||||||||||||||||
Sbjct: 28593 catgaatgaatacatgaata 28612
to top
>gb|AC118004.6| Mus musculus chromosome 16, clone RP23-212P2, complete sequence
          Length = 205796

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 219   gaagaacaacaatacctaccaaca 242
             |||||||||||||| |||||||||
Sbjct: 66404 gaagaacaacaatatctaccaaca 66427
to top
>gb|AY050952.1| Arabidopsis thaliana putative TCP1-chaperonin cofactor A isolog
           (At2g30410) mRNA, complete cds
          Length = 710

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 ggaatcgaagaacaacaata 232
           ||||||||||||||||||||
Sbjct: 61  ggaatcgaagaacaacaata 42
to top
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 365     tggctatggcagaaaaaacc 384
               ||||||||||||||||||||
Sbjct: 5343616 tggctatggcagaaaaaacc 5343635
to top
>gb|AC156575.3| Mus musculus BAC clone RP23-4P20 from chromosome 13, complete sequence
          Length = 196560

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 218    cgaagaacaacaatacctaccaac 241
              ||||||||||||||||| ||||||
Sbjct: 174987 cgaagaacaacaataccaaccaac 175010
to top
>emb|AL805927.4| Mouse DNA sequence from clone RP24-221D22 on chromosome 4 Contains a
              novel pseudogene, complete sequence
          Length = 141669

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 219    gaagaacaacaatacctaccaaca 242
              |||||||||||||||| |||||||
Sbjct: 101769 gaagaacaacaataccaaccaaca 101746
to top
>emb|CR860355.1| Pongo pygmaeus mRNA; cDNA DKFZp459A0313 (from clone DKFZp459A0313)
          Length = 1900

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 458  ttagcaccatcacaaactct 477
            ||||||||||||||||||||
Sbjct: 1146 ttagcaccatcacaaactct 1165
to top
>emb|CR855999.1| Human DNA sequence from clone XX-NCIH2171_12H10, complete sequence
          Length = 116906

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   acatgaatgaatacatgaat 259
             ||||||||||||||||||||
Sbjct: 56916 acatgaatgaatacatgaat 56897
to top
>emb|CR855280.1| Human DNA sequence from clone XX-NCIH2171_1M02, complete sequence
          Length = 132605

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   acatgaatgaatacatgaat 259
             ||||||||||||||||||||
Sbjct: 38368 acatgaatgaatacatgaat 38387
to top
>gb|AC084346.3| Homo sapiens chromosome 8, clone RP3-388N13, complete sequence
          Length = 128437

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 241   catgaatgaatacatgaatatgtc 264
             |||||||||||| |||||||||||
Sbjct: 32580 catgaatgaataaatgaatatgtc 32603
to top
>emb|BX465189.9| Zebrafish DNA sequence from clone RP71-47G15 in linkage group 23,
              complete sequence
          Length = 132715

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     catagtcatagtcatcctta 103
              ||||||||||||||||||||
Sbjct: 129816 catagtcatagtcatcctta 129835
to top
>gb|U93215.3| Arabidopsis thaliana chromosome 2 BAC T6B20 genomic sequence, complete
             sequence
          Length = 104861

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   ggaatcgaagaacaacaata 232
             ||||||||||||||||||||
Sbjct: 93969 ggaatcgaagaacaacaata 93988
to top
>gb|AC002338.3| Arabidopsis thaliana chromosome 2 clone T9D9 map m283, complete
             sequence
          Length = 79272

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   ggaatcgaagaacaacaata 232
             ||||||||||||||||||||
Sbjct: 75186 ggaatcgaagaacaacaata 75167
to top
>gb|AC099669.2| Homo sapiens chromosome 3 clone RP11-944L7, complete sequence
          Length = 217035

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 608   cacttgggagactgagtttc 627
             ||||||||||||||||||||
Sbjct: 35677 cacttgggagactgagtttc 35658
to top
>emb|AL845159.4| Mouse DNA sequence from clone RP23-263O22 on chromosome 2, complete
             sequence
          Length = 166493

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 219   gaagaacaacaatacctaccaaca 242
             |||||||||||||||| |||||||
Sbjct: 17782 gaagaacaacaataccaaccaaca 17805
to top
>gb|AC008491.6|AC008491 Homo sapiens chromosome 5 clone CTC-426L22, complete sequence
          Length = 143661

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   ggctggctatggcagaaaaa 381
             ||||||||||||||||||||
Sbjct: 56149 ggctggctatggcagaaaaa 56130
to top
>emb|BX821991.1|CNS0AA3F Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL90ZF03 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 642

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 ggaatcgaagaacaacaata 232
           ||||||||||||||||||||
Sbjct: 57  ggaatcgaagaacaacaata 38
to top
>gb|AC011310.3|AC011310 Homo sapiens BAC clone CTD-2590C17 from 7p11.2-p21, complete sequence
          Length = 142834

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   atgaatgaatacatgaatat 261
             ||||||||||||||||||||
Sbjct: 32172 atgaatgaatacatgaatat 32191
to top
>gb|AY085814.1| Arabidopsis thaliana clone 1853 mRNA, complete sequence
          Length = 569

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 ggaatcgaagaacaacaata 232
           ||||||||||||||||||||
Sbjct: 41  ggaatcgaagaacaacaata 22
to top
>gb|AC018637.3|AC018637 Human Chromosome 7 clone RP11-175P8, complete sequence
          Length = 184571

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   atgaatgaatacatgaatat 261
             ||||||||||||||||||||
Sbjct: 47341 atgaatgaatacatgaatat 47360
to top
>dbj|BS000233.1| Pan troglodytes chromosome 22 clone:CH251-445J22, map 22, complete
              sequences
          Length = 163962

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    atgaatgaatacatgaatat 261
              ||||||||||||||||||||
Sbjct: 105335 atgaatgaatacatgaatat 105316
to top
>dbj|AP001748.1| Homo sapiens genomic DNA, chromosome 21q, section 92/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    atgaatgaatacatgaatat 261
              ||||||||||||||||||||
Sbjct: 296434 atgaatgaatacatgaatat 296415
to top
>gb|AC140264.2| Mus musculus BAC clone RP23-316F10 from 10, complete sequence
          Length = 176292

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   gggttcactggctgcccgca 584
             ||||||||||||||||||||
Sbjct: 91506 gggttcactggctgcccgca 91487
to top
>gb|AC171736.1| Lycopersicon esculentum chromosome 11 clone C11HBa0323E19, complete
             sequence
          Length = 141216

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 160   tcatttttcatctatctttggtgt 183
             ||||||||||| ||||||||||||
Sbjct: 53555 tcatttttcatgtatctttggtgt 53578
to top
>dbj|AP004282.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1165G2
          Length = 250681

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 241    catgaatgaatacatgaatatgtc 264
              |||||||||||| |||||||||||
Sbjct: 193215 catgaatgaataaatgaatatgtc 193192
to top
>dbj|AP001631.1| Homo sapiens genomic DNA, chromosome 21, clone:KB2007G4, MX1-D21S171
              region, complete sequence
          Length = 148179

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    atgaatgaatacatgaatat 261
              ||||||||||||||||||||
Sbjct: 100721 atgaatgaatacatgaatat 100702


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,633,687
Number of Sequences: 3902068
Number of extensions: 5633687
Number of successful extensions: 127819
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127576
Number of HSP's gapped (non-prelim): 243
length of query: 647
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 624
effective length of database: 17,143,297,704
effective search space: 10697417767296
effective search space used: 10697417767296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top