ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal40c24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 56 1e-04
2gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 50 0.008
3gb|AY746417.1| Poncirus trifoliata resistance protein-like prote... 44 0.51
4gb|AY746416.1| Poncirus trifoliata resistance protein-like prote... 44 0.51
5gb|AY746408.1| Poncirus trifoliata resistance protein-like prote... 44 0.51
6gb|AC130809.25| Medicago truncatula clone mth2-15i12, complete s... 44 0.51
7gb|AC151823.11| Medicago truncatula clone mth2-45h2, complete se... 44 0.51
8gb|AY130786.1| Citrus grandis x Poncirus trifoliata USDA17-47 pu... 44 0.51
9gb|AY130785.1| Citrus grandis x Poncirus trifoliata USDA17-47 pu... 44 0.51
10gb|AC013799.6| Homo sapiens, clone RP11-20J1, complete sequence 44 0.51
11gb|AC090592.5| Homo sapiens chromosome 11, clone RP11-405K6, com... 44 0.51
12dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 44 0.51
13gb|CP000001.1| Bacillus cereus E33L, complete genome 42 2.0
14emb|AL030999.2|HS593F22 Human DNA sequence from clone RP4-593F22... 42 2.0
15gb|AF228784.1| Asterella bolanderi trnL gene, partial intron seq... 42 2.0
16gb|AF264657.1|AF264657 Asterella bolanderi trnL gene, intron seq... 42 2.0
17gb|AF264656.1|AF264656 Asterella innovans trnL gene, intron sequ... 42 2.0
18gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence 42 2.0
19gb|AC133586.12| Mus musculus chromosome 15, clone RP24-456H16, c... 40 7.9
20gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.9
21emb|BX649356.19| Zebrafish DNA sequence from clone CH211-209H5 i... 40 7.9
22ref|XM_446024.1| Candida glabrata CBS138, CAGL0F01155g partial mRNA 40 7.9
23emb|AL136366.24| Human DNA sequence from clone RP11-413C16 on ch... 40 7.9
24gb|AC131735.3| Mus musculus BAC clone RP23-103D3 from 2, complet... 40 7.9
25gb|AC114823.4| Mus musculus BAC clone RP23-209L10 from 2, comple... 40 7.9
26gb|AC142314.1| Pan troglodytes BAC clone RP43-48H9 from 7, compl... 40 7.9
27emb|AL627431.4| Human DNA sequence from clone RP11-235O2 on chro... 40 7.9
28emb|AL591046.4| Human DNA sequence from clone RP11-96O10 on chro... 40 7.9
29gb|AE014816.1| Plasmodium falciparum 3D7 chromosome 14 section 1... 40 7.9
30emb|AL355579.12| Human DNA sequence from clone RP1-146C10 on chr... 40 7.9
31gb|AC020581.10| Homo sapiens chromosome 7 clone RP11-88K4, compl... 40 7.9
32emb|CR380952.1| Candida glabrata strain CBS138 chromosome F comp... 40 7.9
33emb|BX548000.6| Zebrafish DNA sequence from clone CH211-199M8 in... 40 7.9
34emb|BX510911.10| Zebrafish DNA sequence from clone CH211-150K17 ... 40 7.9
35gb|AC025835.7| Homo sapiens chromosome 18, clone RP11-185H18, co... 40 7.9
36gb|AC090857.8| Homo sapiens chromosome 11, clone RP11-670N15, co... 40 7.9
37gb|AC079052.4| Homo sapiens chromosome 18, clone RP11-142I20, co... 40 7.9
38gb|AC009878.9| Homo sapiens chromosome 15, clone RP11-345N11, co... 40 7.9
39gb|AC067794.5| Homo sapiens chromosome 11, clone RP11-558L11, co... 40 7.9
40gb|AC157894.3| Medicago truncatula chromosome 7 BAC clone mth2-8... 40 7.9
41gb|AC018897.4|AC018897 Homo sapiens BAC clone RP11-575J11 from 1... 40 7.9
42dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
43gb|AC009329.20|AC009329 Human Chromosome 7 clone RP11-264E12, co... 40 7.9
44dbj|AP005727.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
45emb|Y18783.2|HPUY18783 Hordeum pusillum BARE-1 long terminal rep... 40 7.9
46gb|AC009227.3|AC009227 Homo sapiens BAC clone RP11-187G20 from 2... 40 7.9
47emb|AL031427.15|HS167A19 Human DNA sequence from clone RP1-167A1... 40 7.9
48dbj|AP002984.3| Homo sapiens genomic DNA, chromosome 11 clone:CT... 40 7.9
49emb|BX294666.6| Zebrafish DNA sequence from clone CH211-251M11 i... 40 7.9
50emb|AL953852.6| Zebrafish DNA sequence from clone CH211-213C6 in... 40 7.9
51emb|CR394538.6| Zebrafish DNA sequence from clone DKEY-189I22 in... 40 7.9
52emb|AL845542.9| Mouse DNA sequence from clone RP23-288I12 on chr... 40 7.9
53emb|AL731708.17| Mouse DNA sequence from clone RP23-103D3 on chr... 40 7.9 
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 96    gggctcccctttatatataggtggaggccgtgagattacaacagagtc 143
             |||||||||||||||||||| | ||||||  ||| |||||||||||||
Sbjct: 44094 gggctcccctttatatatagatagaggcctcgagtttacaacagagtc 44141
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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 18     gatgatgatcttgattacaagggtg 42
              |||||||||||||||||||||||||
Sbjct: 378632 gatgatgatcttgattacaagggtg 378656



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 21     gatgatcttgattacaagggtgca 44
              ||||||||||||||||||||||||
Sbjct: 371213 gatgatcttgattacaagggtgca 371236
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>gb|AY746417.1| Poncirus trifoliata resistance protein-like protein (RGA 21) gene,
           partial cds
          Length = 516

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 464 aagcataagaaatttgtattgttatt 489
           ||||||||||| ||||||||||||||
Sbjct: 211 aagcataagaagtttgtattgttatt 236
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>gb|AY746416.1| Poncirus trifoliata resistance protein-like protein (RGA 20) gene,
           partial cds
          Length = 516

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 464 aagcataagaaatttgtattgttatt 489
           ||||||||||| ||||||||||||||
Sbjct: 211 aagcataagaagtttgtattgttatt 236
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>gb|AY746408.1| Poncirus trifoliata resistance protein-like protein (RGA 12) gene,
           partial cds
          Length = 518

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 464 aagcataagaaatttgtattgttatt 489
           ||||||||||| ||||||||||||||
Sbjct: 213 aagcataagaagtttgtattgttatt 238
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>gb|AC130809.25| Medicago truncatula clone mth2-15i12, complete sequence
          Length = 114664

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 478   tgtattgttattaaaatataaa 499
             ||||||||||||||||||||||
Sbjct: 46873 tgtattgttattaaaatataaa 46894
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>gb|AC151823.11| Medicago truncatula clone mth2-45h2, complete sequence
          Length = 125855

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 478   tgtattgttattaaaatataaa 499
             ||||||||||||||||||||||
Sbjct: 95206 tgtattgttattaaaatataaa 95185
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>gb|AY130786.1| Citrus grandis x Poncirus trifoliata USDA17-47 putative citrus
           disease resistance protein 16R1-19 gene, partial cds
          Length = 515

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 464 aagcataagaaatttgtattgttatt 489
           ||||||||||| ||||||||||||||
Sbjct: 211 aagcataagaagtttgtattgttatt 236
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>gb|AY130785.1| Citrus grandis x Poncirus trifoliata USDA17-47 putative citrus
           disease resistance protein 16R1-13 gene, partial cds
          Length = 518

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 464 aagcataagaaatttgtattgttatt 489
           ||||||||||| ||||||||||||||
Sbjct: 214 aagcataagaagtttgtattgttatt 239
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>gb|AC013799.6| Homo sapiens, clone RP11-20J1, complete sequence
          Length = 186076

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 475   atttgtattgttattaaaatat 496
             ||||||||||||||||||||||
Sbjct: 11600 atttgtattgttattaaaatat 11579
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>gb|AC090592.5| Homo sapiens chromosome 11, clone RP11-405K6, complete sequence
          Length = 168469

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 475    atttgtattgttattaaaatat 496
              ||||||||||||||||||||||
Sbjct: 161203 atttgtattgttattaaaatat 161182
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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 470     aagaaatttgtattgttattaaaatataaa 499
               ||||||||||||||||||| ||||| ||||
Sbjct: 2040764 aagaaatttgtattgttataaaaatttaaa 2040735
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 435     tttatccatacaaaaaataaa 455
               |||||||||||||||||||||
Sbjct: 2864165 tttatccatacaaaaaataaa 2864185
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>emb|AL030999.2|HS593F22 Human DNA sequence from clone RP4-593F22 on chromosome Xq21.1-21.3,
             complete sequence
          Length = 86618

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 476   tttgtattgttattaaaatat 496
             |||||||||||||||||||||
Sbjct: 72998 tttgtattgttattaaaatat 72978
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>gb|AF228784.1| Asterella bolanderi trnL gene, partial intron sequence; chloroplast
           gene for chloroplast product
          Length = 342

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 474 aatttgtattgttattaaaat 494
           |||||||||||||||||||||
Sbjct: 222 aatttgtattgttattaaaat 202
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>gb|AF264657.1|AF264657 Asterella bolanderi trnL gene, intron sequence; chloroplast gene
           for chloroplast product
          Length = 379

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 474 aatttgtattgttattaaaat 494
           |||||||||||||||||||||
Sbjct: 368 aatttgtattgttattaaaat 348
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>gb|AF264656.1|AF264656 Asterella innovans trnL gene, intron sequence; chloroplast gene for
           chloroplast product
          Length = 368

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 474 aatttgtattgttattaaaat 494
           |||||||||||||||||||||
Sbjct: 357 aatttgtattgttattaaaat 337
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>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence
          Length = 184425

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 89    acctcaggggctcccctttatatataggt 117
             |||| |||||||||| |||||||||||||
Sbjct: 27931 accttaggggctcccttttatatataggt 27903
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>gb|AC133586.12| Mus musculus chromosome 15, clone RP24-456H16, complete sequence
          Length = 149834

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 447    aaaaataaaggttagataagcata 470
              |||||||||| |||||||||||||
Sbjct: 100152 aaaaataaagtttagataagcata 100129
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>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
              sequence
          Length = 1347793

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 109    tatataggtggaggccgtgagatt 132
              |||||||||||| |||||||||||
Sbjct: 880269 tatataggtggaagccgtgagatt 880292
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>emb|BX649356.19| Zebrafish DNA sequence from clone CH211-209H5 in linkage group 3,
              complete sequence
          Length = 200759

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 483    tgttattaaaatataaagac 502
              ||||||||||||||||||||
Sbjct: 107340 tgttattaaaatataaagac 107359
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>ref|XM_446024.1| Candida glabrata CBS138, CAGL0F01155g partial mRNA
          Length = 3318

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 458 ttagataagcataagaaatt 477
           ||||||||||||||||||||
Sbjct: 829 ttagataagcataagaaatt 848
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>emb|AL136366.24| Human DNA sequence from clone RP11-413C16 on chromosome 9p22.3-23
             Contains the 5' end of the NFIB gene for nuclear factor
             I/B (NFIB2, NRFIB3, NFI-RED), the 5' end of a novel gene
             and 2 CpG islands, complete sequence
          Length = 120282

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 462   ataagcataagaaatttgta 481
             ||||||||||||||||||||
Sbjct: 21331 ataagcataagaaatttgta 21350
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>gb|AC131735.3| Mus musculus BAC clone RP23-103D3 from 2, complete sequence
          Length = 218830

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 445    caaaaaataaaggttagataagca 468
              |||| |||||||||||||||||||
Sbjct: 160913 caaacaataaaggttagataagca 160936
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>gb|AC114823.4| Mus musculus BAC clone RP23-209L10 from 2, complete sequence
          Length = 170884

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 413   atgaatgcaattatgcagat 432
             ||||||||||||||||||||
Sbjct: 95882 atgaatgcaattatgcagat 95901
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>gb|AC142314.1| Pan troglodytes BAC clone RP43-48H9 from 7, complete sequence
          Length = 198313

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   tttgtattgttattaaaata 495
             ||||||||||||||||||||
Sbjct: 67127 tttgtattgttattaaaata 67108
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>emb|AL627431.4| Human DNA sequence from clone RP11-235O2 on chromosome 13, complete
            sequence
          Length = 19955

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 480  tattgttattaaaatataaa 499
            ||||||||||||||||||||
Sbjct: 8639 tattgttattaaaatataaa 8658
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>emb|AL591046.4| Human DNA sequence from clone RP11-96O10 on chromosome 6, complete
            sequence
          Length = 194466

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 483  tgttattaaaatataaagac 502
            ||||||||||||||||||||
Sbjct: 7052 tgttattaaaatataaagac 7033
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>gb|AE014816.1| Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete
              sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    aattatgcagataatttatc 440
              ||||||||||||||||||||
Sbjct: 219161 aattatgcagataatttatc 219180
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>emb|AL355579.12| Human DNA sequence from clone RP1-146C10 on chromosome 20 Contains STSs
             and GSSs, complete sequence
          Length = 55435

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 405   gtaaatacatgaatgcaattatgc 428
             ||||||||||||||| ||||||||
Sbjct: 22833 gtaaatacatgaatgtaattatgc 22856
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>gb|AC020581.10| Homo sapiens chromosome 7 clone RP11-88K4, complete sequence
          Length = 152989

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   tttgtattgttattaaaata 495
             ||||||||||||||||||||
Sbjct: 72665 tttgtattgttattaaaata 72646
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>emb|CR380952.1| Candida glabrata strain CBS138 chromosome F complete sequence
          Length = 927101

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 458    ttagataagcataagaaatt 477
              ||||||||||||||||||||
Sbjct: 119251 ttagataagcataagaaatt 119232
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>emb|BX548000.6| Zebrafish DNA sequence from clone CH211-199M8 in linkage group 11,
             complete sequence
          Length = 216767

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 431   ataatttatccatacaaaaaataa 454
             ||||||| ||||||||||||||||
Sbjct: 76943 ataatttgtccatacaaaaaataa 76966
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>emb|BX510911.10| Zebrafish DNA sequence from clone CH211-150K17 in linkage group 10,
             complete sequence
          Length = 140584

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 489   taaaatataaagacgtgttt 508
             ||||||||||||||||||||
Sbjct: 54711 taaaatataaagacgtgttt 54730
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>gb|AC025835.7| Homo sapiens chromosome 18, clone RP11-185H18, complete sequence
          Length = 146399

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 467   cataagaaatttgtattgttatta 490
             ||||||||||||||||| ||||||
Sbjct: 16754 cataagaaatttgtattattatta 16777
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>gb|AC090857.8| Homo sapiens chromosome 11, clone RP11-670N15, complete sequence
          Length = 180120

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    caattatgcagataatttat 439
              ||||||||||||||||||||
Sbjct: 172134 caattatgcagataatttat 172153
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>gb|AC079052.4| Homo sapiens chromosome 18, clone RP11-142I20, complete sequence
          Length = 164220

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 467    cataagaaatttgtattgttatta 490
              ||||||||||||||||| ||||||
Sbjct: 131301 cataagaaatttgtattattatta 131324
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>gb|AC009878.9| Homo sapiens chromosome 15, clone RP11-345N11, complete sequence
          Length = 198372

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 480    tattgttattaaaatataaa 499
              ||||||||||||||||||||
Sbjct: 185024 tattgttattaaaatataaa 185005
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>gb|AC067794.5| Homo sapiens chromosome 11, clone RP11-558L11, complete sequence
          Length = 190489

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    caattatgcagataatttat 439
              ||||||||||||||||||||
Sbjct: 161170 caattatgcagataatttat 161151
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>gb|AC157894.3| Medicago truncatula chromosome 7 BAC clone mth2-85d15, complete
             sequence
          Length = 127331

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 478   tgtattgttattaaaatataaaga 501
             |||||| |||||||||||||||||
Sbjct: 23730 tgtattattattaaaatataaaga 23707
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>gb|AC018897.4|AC018897 Homo sapiens BAC clone RP11-575J11 from 11, complete sequence
          Length = 164472

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   tttgtattgttattaaaata 495
             ||||||||||||||||||||
Sbjct: 53058 tttgtattgttattaaaata 53077
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 535     cccaacagaaaatactaacatgtt 558
               |||||||||||||||| |||||||
Sbjct: 3112052 cccaacagaaaatactgacatgtt 3112075
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>gb|AC009329.20|AC009329 Human Chromosome 7 clone RP11-264E12, complete sequence
          Length = 160551

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   tttgtattgttattaaaata 495
             ||||||||||||||||||||
Sbjct: 67451 tttgtattgttattaaaata 67432
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>dbj|AP005727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0038I09
          Length = 153520

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 535   cccaacagaaaatactaacatgtt 558
             |||||||||||||||| |||||||
Sbjct: 21715 cccaacagaaaatactgacatgtt 21738
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>emb|Y18783.2|HPUY18783 Hordeum pusillum BARE-1 long terminal repeat DNA (HPUSA)
          Length = 1779

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 99   ctcccctttatatataggtggagg 122
            ||||||| ||||||||||||||||
Sbjct: 1316 ctcccctctatatataggtggagg 1293
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>gb|AC009227.3|AC009227 Homo sapiens BAC clone RP11-187G20 from 2, complete sequence
          Length = 174149

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   attctacttcttactatctt 188
             ||||||||||||||||||||
Sbjct: 81987 attctacttcttactatctt 81968
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>emb|AL031427.15|HS167A19 Human DNA sequence from clone RP1-167A19 on chromosome 1p32.1-33,
             complete sequence
          Length = 152037

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 485   ttattaaaatataaagacgt 504
             ||||||||||||||||||||
Sbjct: 50106 ttattaaaatataaagacgt 50087
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>dbj|AP002984.3| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2198F5, complete
              sequence
          Length = 153042

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    tttgtattgttattaaaata 495
              ||||||||||||||||||||
Sbjct: 110651 tttgtattgttattaaaata 110670
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>emb|BX294666.6| Zebrafish DNA sequence from clone CH211-251M11 in linkage group 10,
             complete sequence
          Length = 184574

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 489   taaaatataaagacgtgttt 508
             ||||||||||||||||||||
Sbjct: 12037 taaaatataaagacgtgttt 12018
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>emb|AL953852.6| Zebrafish DNA sequence from clone CH211-213C6 in linkage group 6,
             complete sequence
          Length = 200882

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 525   ctcaaaagaacccaacagaaaata 548
             ||||||||||| ||||||||||||
Sbjct: 38386 ctcaaaagaacacaacagaaaata 38363
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>emb|CR394538.6| Zebrafish DNA sequence from clone DKEY-189I22 in linkage group 10,
              complete sequence
          Length = 155394

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 469    taagaaatttgtattgttattaaa 492
              |||||||||||||||||| |||||
Sbjct: 140990 taagaaatttgtattgtttttaaa 140967
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>emb|AL845542.9| Mouse DNA sequence from clone RP23-288I12 on chromosome 2, complete
              sequence
          Length = 178976

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 413    atgaatgcaattatgcagat 432
              ||||||||||||||||||||
Sbjct: 171545 atgaatgcaattatgcagat 171564
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>emb|AL731708.17| Mouse DNA sequence from clone RP23-103D3 on chromosome 2, complete
              sequence
          Length = 218614

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 445    caaaaaataaaggttagataagca 468
              |||| |||||||||||||||||||
Sbjct: 160693 caaacaataaaggttagataagca 160716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,807,233
Number of Sequences: 3902068
Number of extensions: 5807233
Number of successful extensions: 108115
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107858
Number of HSP's gapped (non-prelim): 257
length of query: 582
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 559
effective length of database: 17,143,297,704
effective search space: 9583103416536
effective search space used: 9583103416536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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