ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal40b19 |
|---|---|
| Clone Library Name | barley_pub |
>GALM_HUMAN (Q96C23) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| (BLOCK25 protein) Length = 342 Score = 131 bits (330), Expect = 2e-30 Identities = 64/141 (45%), Positives = 92/141 (65%), Gaps = 2/141 (1%) Frame = -1 Query: 654 PVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDSGDEKNGLKHAAK 478 PV+E IPTGE+ VQ T FD +G + D G+DHN+ L EK+ A+ Sbjct: 203 PVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKEKH---FCAR 259 Query: 477 LKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLETQGFPNAINQTN 301 + ++S R L+++T PG+QFYT N+++G + GK GAVY KH+G CLETQ +P+A+NQ Sbjct: 260 VHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPR 319 Query: 300 FPSVVVQPGAKYKHTMLFEFS 238 FP V+++PG +Y HT F+FS Sbjct: 320 FPPVLLRPGEEYDHTTWFKFS 340
>GALM_PIG (Q9GKX6) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 130 bits (327), Expect = 4e-30 Identities = 65/141 (46%), Positives = 91/141 (64%), Gaps = 2/141 (1%) Frame = -1 Query: 654 PVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDSGDEKNGLKHAAK 478 PV+E IPTGEI VQ T FD +G + + G+DHN+ L EK + A+ Sbjct: 203 PVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHINGFDHNFCLKRSKEK---QFCAR 259 Query: 477 LKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLETQGFPNAINQTN 301 + + S R L+++T PG+QFYT N+++G + GK GAVY KH+G CLETQ +PNA+NQ + Sbjct: 260 VHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPKHSGFCLETQNWPNAVNQPH 319 Query: 300 FPSVVVQPGAKYKHTMLFEFS 238 FP V+++PG +Y HT F FS Sbjct: 320 FPPVLLKPGEEYNHTTWFVFS 340
>GALM_PONPY (Q5R8U1) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 129 bits (324), Expect = 8e-30 Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 2/141 (1%) Frame = -1 Query: 654 PVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDSGDEKNGLKHAAK 478 PV+E IPTGE+ VQ T FD +G + D G+DHN+ L EK+ A+ Sbjct: 203 PVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKEKH---FCAR 259 Query: 477 LKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLETQGFPNAINQTN 301 + ++S R L+++T PG+QFY N+++G + GK GAVY KH+G CLETQ +P+A+NQ Sbjct: 260 VHHAASGRVLEVYTTQPGVQFYMGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPR 319 Query: 300 FPSVVVQPGAKYKHTMLFEFS 238 FP V+++PG +Y HT F+FS Sbjct: 320 FPPVLLRPGEEYDHTTWFKFS 340
>GALM_BOVIN (Q5EA79) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 129 bits (323), Expect = 1e-29 Identities = 64/141 (45%), Positives = 92/141 (65%), Gaps = 2/141 (1%) Frame = -1 Query: 654 PVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDSGDEKNGLKHAAK 478 PV+E IPTGEI SVQ T FD +G + + G+DHN+ L EK + A+ Sbjct: 203 PVDEVLIPTGEIASVQGTAFDLRKPVELGKHLQEFHVNGFDHNFCLKGSKEK---RFCAR 259 Query: 477 LKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLETQGFPNAINQTN 301 + + S R L+++T PG+QFYT N+++G + GK GA Y KH+G CLETQ +P+A+NQ + Sbjct: 260 VHHAGSGRVLEVYTTQPGVQFYTGNFLDGTLKGKSGAGYPKHSGFCLETQSWPDAVNQPH 319 Query: 300 FPSVVVQPGAKYKHTMLFEFS 238 FP V+++PG +Y HT F+FS Sbjct: 320 FPPVLLKPGEEYDHTTWFKFS 340
>GALM_MOUSE (Q8K157) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 128 bits (321), Expect = 2e-29 Identities = 62/141 (43%), Positives = 92/141 (65%), Gaps = 2/141 (1%) Frame = -1 Query: 654 PVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDSGDEKNGLKHAAK 478 PV+E IPTG I V+ T FD +G + D G+DHN+ L EK K A+ Sbjct: 203 PVDETLIPTGVIAPVEGTAFDLRKPVELGTHLQDYHIHGFDHNFCLKESKEK---KFCAR 259 Query: 477 LKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLETQGFPNAINQTN 301 ++ ++S R L+++T PG+QFYT N+++G + GK GAVY KH+G+CLETQ +P+++NQ Sbjct: 260 VRHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGLCLETQNWPDSVNQPQ 319 Query: 300 FPSVVVQPGAKYKHTMLFEFS 238 FP +++PG +Y HT F+FS Sbjct: 320 FPPALLRPGEEYNHTTWFKFS 340
>GALM_RAT (Q66HG4) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 124 bits (311), Expect = 3e-28 Identities = 61/141 (43%), Positives = 89/141 (63%), Gaps = 2/141 (1%) Frame = -1 Query: 654 PVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDSGDEKNGLKHAAK 478 PV+E IPTG I V+ T FD +G + G+DHN+ L EK K A+ Sbjct: 203 PVDETLIPTGVIAPVEGTAFDLRKPVELGKHLQSYHIHGFDHNFCLKESKEK---KFCAR 259 Query: 477 LKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLETQGFPNAINQTN 301 + ++S R L+++T PG+QFYT N+++G + GK G VY KH+G CLETQ +P+A+NQ Sbjct: 260 VHHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKSGEVYPKHSGFCLETQNWPDAVNQPQ 319 Query: 300 FPSVVVQPGAKYKHTMLFEFS 238 FP ++++PG +Y HT F+FS Sbjct: 320 FPPILLRPGEEYNHTTWFKFS 340
>GALM_ACICA (P05149) Aldose 1-epimerase precursor (EC 5.1.3.3) (Mutarotase)| Length = 381 Score = 87.4 bits (215), Expect = 3e-17 Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 10/153 (6%) Frame = -1 Query: 669 AKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVPG---------GYDHNYVLD 517 A I ++N++PTGEI SV TPFDF I + D+ GYD +V++ Sbjct: 229 AGRILVTDQNSLPTGEIASVAGTPFDFRMPKAI---VKDIRANNQQLAYGYGYDQTWVIN 285 Query: 516 SGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCL 340 + L AA + D S RT+ + T P +Q YTA+++ G I G G +Y + + L Sbjct: 286 QKSQGK-LNLAAIVVDPKSKRTMQVLTTEPSVQMYTADHLLGNIVGANGVLYRQADALAL 344 Query: 339 ETQGFPNAINQTNFPSVVVQPGAKYKHTMLFEF 241 ETQ FP++ NQ FPS + P Y +F+F Sbjct: 345 ETQHFPDSPNQPTFPSTRLNPNQTYNSVTVFKF 377
>GALM_SHIFL (P0A9C4) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 346 Score = 69.3 bits (168), Expect = 1e-11 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 7/152 (4%) Frame = -1 Query: 669 AKHITPVNENTIPTGEIMSVQDTPFDFTT-----EHRIGDRINDVPGGYDHNYVLDSGDE 505 A PV+E IP + SV T FDF + + D GYDH ++L + + Sbjct: 196 ADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQA--K 253 Query: 504 KNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGVCLETQGF 325 +G K AA + + L ++T AP +QFY+ N++ G +G Y G+ LE++ Sbjct: 254 GDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFL 313 Query: 324 PNAINQTNF--PSVVVQPGAKYKHTMLFEFSA 235 P++ N + P ++PG +Y ++F A Sbjct: 314 PDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIA 345
>GALM_ECOLI (P0A9C3) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 346 Score = 69.3 bits (168), Expect = 1e-11 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 7/152 (4%) Frame = -1 Query: 669 AKHITPVNENTIPTGEIMSVQDTPFDFTT-----EHRIGDRINDVPGGYDHNYVLDSGDE 505 A PV+E IP + SV T FDF + + D GYDH ++L + + Sbjct: 196 ADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQA--K 253 Query: 504 KNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGVCLETQGF 325 +G K AA + + L ++T AP +QFY+ N++ G +G Y G+ LE++ Sbjct: 254 GDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFL 313 Query: 324 PNAINQTNF--PSVVVQPGAKYKHTMLFEFSA 235 P++ N + P ++PG +Y ++F A Sbjct: 314 PDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIA 345
>GALM_HAEIN (P31765) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 340 Score = 59.3 bits (142), Expect = 1e-08 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 8/146 (5%) Frame = -1 Query: 654 PVNENTIPTGEIMSVQDTPFDFTTEHRI------GDRINDVPGGYDHNYVLDSGDEKNGL 493 PV+ IP + V +T FDF I GD+ GYDH+++++ K Sbjct: 200 PVDNEGIPNSPLKHVVNTSFDFRIAKPIKQDFLQGDQ--QATKGYDHSFIVN----KAWQ 253 Query: 492 KHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGVCLETQGFPNAI 313 K L + +L++ T +Q YT NY+ G + G +Y +G+ LETQ P+ Sbjct: 254 KPCVLLTSPTGDLSLEVRTSQAALQVYTGNYLAGTPTRNGELYADFSGIALETQCLPDTP 313 Query: 312 NQTNFPSV--VVQPGAKYKHTMLFEF 241 N + + + + G +Y F+F Sbjct: 314 NHPEWQNYGGIQKAGGRYYQWTEFKF 339
>GALM_STRTR (P21955) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 348 Score = 49.7 bits (117), Expect = 8e-06 Identities = 30/140 (21%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Frame = -1 Query: 651 VNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVPGGYDHNYVLDSGDEKNGLKHAAKLK 472 ++ IPTG+ ++V +T +DF + RI + G+D +V+ G + +K A L Sbjct: 206 LDSELIPTGQKINVDETNYDFRKTTDLLPRI-EANNGFDDAFVV-GGGTCDHVKEVAILH 263 Query: 471 DSSSSRTLDLWTDAPGMQFYTANYVNG---ITGKGGAVYGKHAGVCLETQGFPNAINQTN 301 D S ++++++ G+ +T + + G + + + +E Q P+A+N Sbjct: 264 DKESGDGIEIFSNRNGLVIFTMDDIEDNIYFARDKGKMAKRREAIAMEAQTLPDAVNHKG 323 Query: 300 FPSVVVQPGAKYKHTMLFEF 241 F +++ G + + F++ Sbjct: 324 FGDIILDKGHSVNYEIGFQY 343
>GAL10_KLULA (P09609) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 688 Score = 45.1 bits (105), Expect = 2e-04 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 9/146 (6%) Frame = -1 Query: 651 VNENTIPTG------EIMSVQDTPFDFTTEHRIGDR--INDVPGGYDHNYVLDSGDEKNG 496 VN +PTG ++ + D+P + T + + D ++ +P D + Sbjct: 553 VNNKLLPTGNLKKYTQVATFNDSPTEITEKEPVLDFCFVSGLPAKLD--------TRSSP 604 Query: 495 LKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGVCLETQGFPNA 316 L KL + + +++ T P Q YT +YV+ + K Y AG+C E + +A Sbjct: 605 LTPVFKLSNEDAKLEVEVATTEPTFQVYTGDYVD-VKDK----YENRAGICCEPGRYIDA 659 Query: 315 INQTNFPSVVVQP-GAKYKHTMLFEF 241 +N + S VV P G Y H + + F Sbjct: 660 VNNPEWKSSVVLPAGETYGHKLSYTF 685
>GAL10_SCHPO (Q9HDU3) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 713 Score = 37.0 bits (84), Expect = 0.054 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 8/136 (5%) Frame = -1 Query: 648 NENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVPGGYDHNYVLDS-------GDEKNGLK 490 +E ++PTG+I+ Q+ D T ++ I+ +D+ +++D K LK Sbjct: 561 SETSLPTGDIVEWQN---DITKPTKLDPNIS-----FDNCFIVDREASKFCLDTRKYSLK 612 Query: 489 HAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGVCLETQGFPNAIN 310 + ++ S L + T P Q YT + G + +G C+ET F NA+N Sbjct: 613 NIVEVIHPSVPVKLVVSTTEPAFQLYTGD------GNDICEFQSRSGFCVETGRFINALN 666 Query: 309 QTNF-PSVVVQPGAKY 265 + V+++ G Y Sbjct: 667 NEKWSKQVILRKGEVY 682
>SYR_MYCSM (Q9X5M0) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 550 Score = 30.4 bits (67), Expect = 5.0 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = -1 Query: 627 GEIMSVQDTPFDFTTEHRIGDRINDVPGGYDHNY----VLDSGDEKNGLKHAAKL 475 GE V T HR+ + D+ G Y Y VL GDE+ G H+A+L Sbjct: 471 GEFPRVLKTAASLREPHRVCRYLEDLAGDYHRFYDSCRVLPQGDEEPGDLHSARL 525
>RPOB_BACTN (Q8A469) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1270 Score = 30.4 bits (67), Expect = 5.0 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -1 Query: 525 VLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYV-NGITGK 379 VL + G+K A + D ++ LD WTD G+ Y Y+ +G TG+ Sbjct: 1100 VLGRAGKTLGVKFATPIFDGATMDDLDQWTDKAGLPRYCKTYLCDGGTGE 1149
>RPC1A_CHLRE (Q8HUG9) DNA-directed RNA polymerase beta' chain N-terminal subunit| (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta' N-terminal section) (RNA polymerase beta' N-terminal section) Length = 603 Score = 30.0 bits (66), Expect = 6.6 Identities = 20/76 (26%), Positives = 34/76 (44%) Frame = +3 Query: 42 TYTQPNISPFEHYFLNEIKSLSSDHYTFFYFSLVLQLDSFLLVVLFHSTTTAVAAIKLLA 221 T TQ ++PF+ FLN S S +F ++V L +V F ++ + + I L+ Sbjct: 166 TLTQKGLNPFQSLFLNTKSSSPSTARSFGTKNIVNTLQIKKIVHKFENSYSKLTEINLIT 225 Query: 222 LSLIMLRIQTTWCAYT 269 ++L W T Sbjct: 226 INLASANRIRQWAEKT 241
>GUX1_PHACH (P13860) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)| (Exocellobiohydrolase I) (1,4-beta-cellobiohydrolase) Length = 516 Score = 30.0 bits (66), Expect = 6.6 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 1/92 (1%) Frame = -1 Query: 537 DHNYVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTD-APGMQFYTANYVNGITGKGGAVYG 361 D NY G GLK + + L +W D A M + +NY T K + G Sbjct: 354 DTNYFAQHG----GLKQVGEALRTGMVLALSIWDDYAANMLWLDSNYP---TNKDPSTPG 406 Query: 360 KHAGVCLETQGFPNAINQTNFPSVVVQPGAKY 265 G C T G P I + + VV K+ Sbjct: 407 VARGTCATTSGVPAQIEAQSPNAYVVFSNIKF 438
>Y5G0_ENCCU (Q8STJ2) Hypothetical protein ECU05_1600/ECU11_0130| Length = 298 Score = 30.0 bits (66), Expect = 6.6 Identities = 16/60 (26%), Positives = 31/60 (51%) Frame = +3 Query: 81 FLNEIKSLSSDHYTFFYFSLVLQLDSFLLVVLFHSTTTAVAAIKLLALSLIMLRIQTTWC 260 FL+ + + S + ++V + +L V F AVA ++LL L+++ + TT+C Sbjct: 159 FLDSQQMMESQRAYYVSLTVVQMAFAIVLAVTFDYGNDAVAPLELLRALLLLMLVGTTFC 218
>IRF8_MOUSE (P23611) Interferon regulatory factor 8 (IRF-8) (Interferon| consensus sequence-binding protein) (ICSBP) Length = 424 Score = 30.0 bits (66), Expect = 6.6 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = -3 Query: 385 GQRRSCLREACRSMLGNPGVPQCHQPDQF-PVC 290 GQ + E CR L PG+P+ + PD PVC Sbjct: 217 GQATTTCLEGCRLSLSQPGLPKLYGPDGLEPVC 249
>GR05A_DROME (Q9W497) Gustatory receptor for trehalose (Trehalose receptor)| Length = 444 Score = 29.6 bits (65), Expect = 8.6 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +3 Query: 105 SSDHYTFFYFSLVLQLDSFLLVVLFHSTTTAVAAIKLLALSLIMLR 242 SS H +FYFSL+ L V+LF S A L L L+ L+ Sbjct: 334 SSAHAVYFYFSLLFLLSRSTAVLLFVSAINDQAREPLRLLRLVPLK 379
>COFG_HALMA (Q5UXN0) FO synthase subunit 1 (EC 2.5.1.-)| (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1) Length = 343 Score = 29.6 bits (65), Expect = 8.6 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -3 Query: 424 HAVLYRQLCEWHHGQRRSCLREACRSMLGNPGVPQCHQPDQ 302 + ++ QL EW H LREAC L +P + DQ Sbjct: 76 YTAVHDQLAEWGHDSIHEYLREACEIALEEGLLPHANPGDQ 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,385,625 Number of Sequences: 219361 Number of extensions: 2268088 Number of successful extensions: 6843 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 6629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6818 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
