| Clone Name | rbaal8l02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ491818.1|OSA491818 Oryza sativa (japonica cultivar-group) mRNA for putative sodium transporter (hkt6 gene) Length = 1679 Score = 280 bits (141), Expect = 6e-72 Identities = 448/549 (81%), Gaps = 1/549 (0%) Strand = Plus / Minus Query: 170 gatgctatctaagcttccatgcttttcctcccttcaaattggacgccttaagcctcccga 229 |||| |||||||||||||| ||| |||| ||||||| || ||| ||||||||||||| Sbjct: 1655 gatgttatctaagcttccaggctcttccacccttcatgttaaacgttttaagcctcccga 1596 Query: 230 agaccatgacaatgatcagaatcattttcccctcgttgctccatcttccagcaaacccat 289 | | |||||| |||||||| ||| |||||| | || ||||||| | || |||||||| | Sbjct: 1595 aaagcatgacgatgatcaggatcgctttcccattgtcgctccatttccccgcaaacccgt 1536 Query: 290 atgaagcatccttgcagcgtaggtcttgtttgagtagcctcttgcagctgtaacccattg 349 | || ||||||||||||||| || || || |||||||||||||||||||| || | | Sbjct: 1535 acgaggcatccttgcagcgtgcatcatggttcagtagcctcttgcagctgtagccaaccg 1476 Query: 350 acaagcccacgtttccatatgcacttacaacttcgaacagtatgctcaaaacattgaaat 409 | || ||||| |||||||||||||| || ||||| |||| |||||| ||||||||||||| Sbjct: 1475 agaaccccacatttccatatgcactgacgacttcaaacaatatgctgaaaacattgaaat 1416 Query: 410 taagtggatctgtggtcagtgcttctcgctcagtgatgcaaattagcatgacaaagatag 469 ||||||||||||| | || | || || || ||||||||||||||||| |||||||||| Sbjct: 1415 taagtggatctgtagccatcgagtcccgttctgtgatgcaaattagcattacaaagatag 1356 Query: 470 ccaaataagacaactgggacaagatccagtcctccaacaacccttttctgttgtatctct 529 |||||||||||| || || |||||||||| |||||| | ||||||||| |||| | ||| Sbjct: 1355 ccaaataagacatatgtgagaagatccagttctccaatagcccttttcttttgtttatct 1296 Query: 530 tctcgtccttagaatacccgatcgtcgtaattgggtaaaaatgatgtgtaaccgggaaga 589 ||||| |||||||| || | | || | |||||||||| || |||||||| || ||| Sbjct: 1295 tctcggtcttagaat-cctcaccatcatgtctgggtaaaaacgaagtgtaaccagggaga 1237 Query: 590 tacatcatgacggtgtataggactattattgccgaagagatgctcgacagatccacaata 649 |||||||||| |||||||||||||| ||||| ||||||| | | |||||||| || | Sbjct: 1236 tacatcatgatggtgtataggactaggattgctgaagagaggtttgacagatctgtaaca 1177 Query: 650 gattcaccagcatgcctcgcattggttgattgaaaaagagcacctactatcttttggtag 709 |||||||| |||||||| |||||| || ||||| ||||| |||||||||||| ||| Sbjct: 1176 gattcacctgcatgcctagcattgaccgactgaaatagagcggatactatcttttgatag 1117 Query: 710 ctgctcatt 718 |||||||| Sbjct: 1116 ttgctcatt 1108
>ref|XM_464321.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1593 Score = 258 bits (130), Expect = 2e-65 Identities = 442/544 (81%), Gaps = 4/544 (0%) Strand = Plus / Minus Query: 175 tatctaagcttccatgcttttcctcccttcaaattggacgccttaagcctcccgaagacc 234 |||||||||||||| ||| |||| ||||||| || ||| |||||||||||||| | | Sbjct: 1592 tatctaagcttccaggctcttccacccttcatgttaaacgttttaagcctcccgaaaagc 1533 Query: 235 atgacaatgatcagaatcattttcccctcgttgctccatcttccagcaaacccatatgaa 294 ||||| |||||||| ||| |||||| | || ||||||| | || |||||||| || || Sbjct: 1532 atgacgatgatcaggatcgctttcccattgtcgctccatttccccgcaaacccgtacgag 1473 Query: 295 gcatccttgcagcgtaggtcttgtttgagtagcctcttgcagctgtaacccattgacaag 354 ||||||||||||||| || || || |||||||||||||||||||| || | || || Sbjct: 1472 gcatccttgcagcgtgcatcatggttcagtagcctcttgcagctgtagccaaccgagaac 1413 Query: 355 cccacgtttccatatgcacttacaacttcgaacagtatgctcaaaacattgaaattaagt 414 ||||| |||||||||||| || ||||| |||| |||||| |||||||||||||||||| Sbjct: 1412 cccacatttccatatgca---acgacttcaaacaatatgctgaaaacattgaaattaagt 1356 Query: 415 ggatctgtggtcagtgcttctcgctcagtgatgcaaattagcatgacaaagatagccaaa 474 |||||||| | || | || || || ||||||||||||||||| ||||||||||||||| Sbjct: 1355 ggatctgtagccatcgagtcccgttctgtgatgcaaattagcattacaaagatagccaaa 1296 Query: 475 taagacaactgggacaagatccagtcctccaacaacccttttctgttgtatctcttctcg 534 ||||||| || || |||||||||| |||||| | ||||||||| |||| | |||||||| Sbjct: 1295 taagacatatgtgagaagatccagttctccaatagcccttttcttttgtttatcttctcg 1236 Query: 535 tccttagaatacccgatcgtcgtaattgggtaaaaatgatgtgtaaccgggaagatacat 594 |||||||| || | | || | |||||||||| || |||||||| || |||||||| Sbjct: 1235 gtcttagaat-cctcaccatcatgtctgggtaaaaacgaagtgtaaccagggagatacat 1177 Query: 595 catgacggtgtataggactattattgccgaagagatgctcgacagatccacaatagattc 654 ||||| |||||||||||||| ||||| ||||||| | | |||||||| || |||||| Sbjct: 1176 catgatggtgtataggactaggattgctgaagagaggtttgacagatctgtaacagattc 1117 Query: 655 accagcatgcctcgcattggttgattgaaaaagagcacctactatcttttggtagctgct 714 ||| |||||||| |||||| || ||||| ||||| |||||||||||| ||| |||| Sbjct: 1116 acctgcatgcctagcattgaccgactgaaatagagcggatactatcttttgatagttgct 1057 Query: 715 catt 718 |||| Sbjct: 1056 catt 1053
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 131 bits (66), Expect = 4e-27 Identities = 141/166 (84%) Strand = Plus / Minus Query: 379 acttcgaacagtatgctcaaaacattgaaattaagtggatctgtggtcagtgcttctcgc 438 ||||| |||| |||||| |||||||||||||||||||||||||| | || | || || Sbjct: 4105327 acttcaaacaatatgctgaaaacattgaaattaagtggatctgtagccatcgagtcccgt 4105268 Query: 439 tcagtgatgcaaattagcatgacaaagatagccaaataagacaactgggacaagatccag 498 || ||||||||||||||||| |||||||||||||||||||||| || || ||||||||| Sbjct: 4105267 tctgtgatgcaaattagcattacaaagatagccaaataagacatatgtgagaagatccag 4105208 Query: 499 tcctccaacaacccttttctgttgtatctcttctcgtccttagaat 544 | |||||| | ||||||||| |||| | |||||||| |||||||| Sbjct: 4105207 ttctccaatagcccttttcttttgtttatcttctcggtcttagaat 4105162 Score = 105 bits (53), Expect = 2e-19 Identities = 167/205 (81%) Strand = Plus / Minus Query: 170 gatgctatctaagcttccatgcttttcctcccttcaaattggacgccttaagcctcccga 229 |||| |||||||||||||| ||| |||| ||||||| || ||| ||||||||||||| Sbjct: 4105630 gatgttatctaagcttccaggctcttccacccttcatgttaaacgttttaagcctcccga 4105571 Query: 230 agaccatgacaatgatcagaatcattttcccctcgttgctccatcttccagcaaacccat 289 | | |||||| |||||||| ||| |||||| | || ||||||| | || |||||||| | Sbjct: 4105570 aaagcatgacgatgatcaggatcgctttcccattgtcgctccatttccccgcaaacccgt 4105511 Query: 290 atgaagcatccttgcagcgtaggtcttgtttgagtagcctcttgcagctgtaacccattg 349 | || ||||||||||||||| || || || |||||||||||||||||||| || | | Sbjct: 4105510 acgaggcatccttgcagcgtgcatcatggttcagtagcctcttgcagctgtagccaaccg 4105451 Query: 350 acaagcccacgtttccatatgcact 374 | || ||||| |||||||||||||| Sbjct: 4105450 agaaccccacatttccatatgcact 4105426 Score = 73.8 bits (37), Expect = 7e-10 Identities = 106/129 (82%) Strand = Plus / Minus Query: 590 tacatcatgacggtgtataggactattattgccgaagagatgctcgacagatccacaata 649 |||||||||| |||||||||||||| ||||| ||||||| | | |||||||| || | Sbjct: 4104619 tacatcatgatggtgtataggactaggattgctgaagagaggtttgacagatctgtaaca 4104560 Query: 650 gattcaccagcatgcctcgcattggttgattgaaaaagagcacctactatcttttggtag 709 |||||||| |||||||| |||||| || ||||| ||||| |||||||||||| ||| Sbjct: 4104559 gattcacctgcatgcctagcattgaccgactgaaatagagcggatactatcttttgatag 4104500 Query: 710 ctgctcatt 718 |||||||| Sbjct: 4104499 ttgctcatt 4104491
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 131 bits (66), Expect = 4e-27 Identities = 141/166 (84%) Strand = Plus / Minus Query: 379 acttcgaacagtatgctcaaaacattgaaattaagtggatctgtggtcagtgcttctcgc 438 ||||| |||| |||||| |||||||||||||||||||||||||| | || | || || Sbjct: 15341 acttcaaacaatatgctgaaaacattgaaattaagtggatctgtagccatcgagtcccgt 15282 Query: 439 tcagtgatgcaaattagcatgacaaagatagccaaataagacaactgggacaagatccag 498 || ||||||||||||||||| |||||||||||||||||||||| || || ||||||||| Sbjct: 15281 tctgtgatgcaaattagcattacaaagatagccaaataagacatatgtgagaagatccag 15222 Query: 499 tcctccaacaacccttttctgttgtatctcttctcgtccttagaat 544 | |||||| | ||||||||| |||| | |||||||| |||||||| Sbjct: 15221 ttctccaatagcccttttcttttgtttatcttctcggtcttagaat 15176 Score = 105 bits (53), Expect = 2e-19 Identities = 167/205 (81%) Strand = Plus / Minus Query: 170 gatgctatctaagcttccatgcttttcctcccttcaaattggacgccttaagcctcccga 229 |||| |||||||||||||| ||| |||| ||||||| || ||| ||||||||||||| Sbjct: 15644 gatgttatctaagcttccaggctcttccacccttcatgttaaacgttttaagcctcccga 15585 Query: 230 agaccatgacaatgatcagaatcattttcccctcgttgctccatcttccagcaaacccat 289 | | |||||| |||||||| ||| |||||| | || ||||||| | || |||||||| | Sbjct: 15584 aaagcatgacgatgatcaggatcgctttcccattgtcgctccatttccccgcaaacccgt 15525 Query: 290 atgaagcatccttgcagcgtaggtcttgtttgagtagcctcttgcagctgtaacccattg 349 | || ||||||||||||||| || || || |||||||||||||||||||| || | | Sbjct: 15524 acgaggcatccttgcagcgtgcatcatggttcagtagcctcttgcagctgtagccaaccg 15465 Query: 350 acaagcccacgtttccatatgcact 374 | || ||||| |||||||||||||| Sbjct: 15464 agaaccccacatttccatatgcact 15440 Score = 73.8 bits (37), Expect = 7e-10 Identities = 106/129 (82%) Strand = Plus / Minus Query: 590 tacatcatgacggtgtataggactattattgccgaagagatgctcgacagatccacaata 649 |||||||||| |||||||||||||| ||||| ||||||| | | |||||||| || | Sbjct: 14633 tacatcatgatggtgtataggactaggattgctgaagagaggtttgacagatctgtaaca 14574 Query: 650 gattcaccagcatgcctcgcattggttgattgaaaaagagcacctactatcttttggtag 709 |||||||| |||||||| |||||| || ||||| ||||| |||||||||||| ||| Sbjct: 14573 gattcacctgcatgcctagcattgaccgactgaaatagagcggatactatcttttgatag 14514 Query: 710 ctgctcatt 718 |||||||| Sbjct: 14513 ttgctcatt 14505
>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0073A21 Length = 170051 Score = 131 bits (66), Expect = 4e-27 Identities = 141/166 (84%) Strand = Plus / Minus Query: 379 acttcgaacagtatgctcaaaacattgaaattaagtggatctgtggtcagtgcttctcgc 438 ||||| |||| |||||| |||||||||||||||||||||||||| | || | || || Sbjct: 151993 acttcaaacaatatgctgaaaacattgaaattaagtggatctgtagccatcgagtcccgt 151934 Query: 439 tcagtgatgcaaattagcatgacaaagatagccaaataagacaactgggacaagatccag 498 || ||||||||||||||||| |||||||||||||||||||||| || || ||||||||| Sbjct: 151933 tctgtgatgcaaattagcattacaaagatagccaaataagacatatgtgagaagatccag 151874 Query: 499 tcctccaacaacccttttctgttgtatctcttctcgtccttagaat 544 | |||||| | ||||||||| |||| | |||||||| |||||||| Sbjct: 151873 ttctccaatagcccttttcttttgtttatcttctcggtcttagaat 151828 Score = 105 bits (53), Expect = 2e-19 Identities = 167/205 (81%) Strand = Plus / Minus Query: 170 gatgctatctaagcttccatgcttttcctcccttcaaattggacgccttaagcctcccga 229 |||| |||||||||||||| ||| |||| ||||||| || ||| ||||||||||||| Sbjct: 152296 gatgttatctaagcttccaggctcttccacccttcatgttaaacgttttaagcctcccga 152237 Query: 230 agaccatgacaatgatcagaatcattttcccctcgttgctccatcttccagcaaacccat 289 | | |||||| |||||||| ||| |||||| | || ||||||| | || |||||||| | Sbjct: 152236 aaagcatgacgatgatcaggatcgctttcccattgtcgctccatttccccgcaaacccgt 152177 Query: 290 atgaagcatccttgcagcgtaggtcttgtttgagtagcctcttgcagctgtaacccattg 349 | || ||||||||||||||| || || || |||||||||||||||||||| || | | Sbjct: 152176 acgaggcatccttgcagcgtgcatcatggttcagtagcctcttgcagctgtagccaaccg 152117 Query: 350 acaagcccacgtttccatatgcact 374 | || ||||| |||||||||||||| Sbjct: 152116 agaaccccacatttccatatgcact 152092 Score = 73.8 bits (37), Expect = 7e-10 Identities = 106/129 (82%) Strand = Plus / Minus Query: 590 tacatcatgacggtgtataggactattattgccgaagagatgctcgacagatccacaata 649 |||||||||| |||||||||||||| ||||| ||||||| | | |||||||| || | Sbjct: 151285 tacatcatgatggtgtataggactaggattgctgaagagaggtttgacagatctgtaaca 151226 Query: 650 gattcaccagcatgcctcgcattggttgattgaaaaagagcacctactatcttttggtag 709 |||||||| |||||||| |||||| || ||||| ||||| |||||||||||| ||| Sbjct: 151225 gattcacctgcatgcctagcattgaccgactgaaatagagcggatactatcttttgatag 151166 Query: 710 ctgctcatt 718 |||||||| Sbjct: 151165 ttgctcatt 151157
>emb|AJ491817.1|OSA491817 Oryza sativa (japonica cultivar-group) partial hkt6 gene for putative sodium transporter, exons 1-3 Length = 3157 Score = 131 bits (66), Expect = 4e-27 Identities = 141/166 (84%) Strand = Plus / Minus Query: 379 acttcgaacagtatgctcaaaacattgaaattaagtggatctgtggtcagtgcttctcgc 438 ||||| |||| |||||| |||||||||||||||||||||||||| | || | || || Sbjct: 2365 acttcaaacaatatgctgaaaacattgaaattaagtggatctgtagccatcgagtcccgt 2306 Query: 439 tcagtgatgcaaattagcatgacaaagatagccaaataagacaactgggacaagatccag 498 || ||||||||||||||||| |||||||||||||||||||||| || || ||||||||| Sbjct: 2305 tctgtgatgcaaattagcattacaaagatagccaaataagacatatgtgagaagatccag 2246 Query: 499 tcctccaacaacccttttctgttgtatctcttctcgtccttagaat 544 | |||||| | ||||||||| |||| | |||||||| |||||||| Sbjct: 2245 ttctccaatagcccttttcttttgtttatcttctcggtcttagaat 2200 Score = 105 bits (53), Expect = 2e-19 Identities = 167/205 (81%) Strand = Plus / Minus Query: 170 gatgctatctaagcttccatgcttttcctcccttcaaattggacgccttaagcctcccga 229 |||| |||||||||||||| ||| |||| ||||||| || ||| ||||||||||||| Sbjct: 2668 gatgttatctaagcttccaggctcttccacccttcatgttaaacgttttaagcctcccga 2609 Query: 230 agaccatgacaatgatcagaatcattttcccctcgttgctccatcttccagcaaacccat 289 | | |||||| |||||||| ||| |||||| | || ||||||| | || |||||||| | Sbjct: 2608 aaagcatgacgatgatcaggatcgctttcccattgtcgctccatttccccgcaaacccgt 2549 Query: 290 atgaagcatccttgcagcgtaggtcttgtttgagtagcctcttgcagctgtaacccattg 349 | || ||||||||||||||| || || || |||||||||||||||||||| || | | Sbjct: 2548 acgaggcatccttgcagcgtgcatcatggttcagtagcctcttgcagctgtagccaaccg 2489 Query: 350 acaagcccacgtttccatatgcact 374 | || ||||| |||||||||||||| Sbjct: 2488 agaaccccacatttccatatgcact 2464 Score = 73.8 bits (37), Expect = 7e-10 Identities = 106/129 (82%) Strand = Plus / Minus Query: 590 tacatcatgacggtgtataggactattattgccgaagagatgctcgacagatccacaata 649 |||||||||| |||||||||||||| ||||| ||||||| | | |||||||| || | Sbjct: 1657 tacatcatgatggtgtataggactaggattgctgaagagaggtttgacagatctgtaaca 1598 Query: 650 gattcaccagcatgcctcgcattggttgattgaaaaagagcacctactatcttttggtag 709 |||||||| |||||||| |||||| || ||||| ||||| |||||||||||| ||| Sbjct: 1597 gattcacctgcatgcctagcattgaccgactgaaatagagcggatactatcttttgatag 1538 Query: 710 ctgctcatt 718 |||||||| Sbjct: 1537 ttgctcatt 1529
>dbj|AK120889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029F13, full insert sequence Length = 2267 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 332 tgcagctgtaacccattgacaagcccacgtttccatatgcacttacaacttcga 385 |||| ||||| |||||||| || ||||| |||||||||||||| |||||||||| Sbjct: 1427 tgcaactgtagcccattgagaaccccacatttccatatgcactgacaacttcga 1374
>dbj|AK109852.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F09, full insert sequence Length = 1723 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 332 tgcagctgtaacccattgacaagcccacgtttccatatgcacttacaacttcga 385 |||| ||||| |||||||| || ||||| |||||||||||||| |||||||||| Sbjct: 1429 tgcaactgtagcccattgagaaccccacatttccatatgcactgacaacttcga 1376
>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03, complete sequence Length = 179798 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Plus Query: 332 tgcagctgtaacccattgacaagcccacgtttccatatgcact 374 |||| ||||| |||||||| || ||||| |||||||||||||| Sbjct: 36451 tgcaactgtagcccattgagaaccccacatttccatatgcact 36493
>dbj|AB234305.1| Phragmites australis e-PhaHKT1 mRNA for high-affinity potassium transporter, complete cds Length = 1906 Score = 46.1 bits (23), Expect = 0.16 Identities = 50/59 (84%) Strand = Plus / Minus Query: 214 gccttaagcctcccgaagaccatgacaatgatcagaatcattttcccctcgttgctcca 272 ||||| |||||||| ||| |||||||| |||||| |||| ||||| ||||||||||| Sbjct: 1644 gccttgagcctcccatagagcatgacaaagatcagcatcaacttcccttcgttgctcca 1586
>dbj|AB234304.1| Phragmites australis n-PhaHKT1 mRNA for high-affinity potassium transporter, complete cds Length = 1828 Score = 46.1 bits (23), Expect = 0.16 Identities = 50/59 (84%) Strand = Plus / Minus Query: 214 gccttaagcctcccgaagaccatgacaatgatcagaatcattttcccctcgttgctcca 272 ||||| |||||||| ||| |||||||| |||||| |||| ||||| ||||||||||| Sbjct: 1566 gccttgagcctcccatagagcatgacaaagatcagcatcaacttcccttcgttgctcca 1508
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Plus Query: 332 tgcagctgtaacccattgacaagcccacgtttccatatgcact 374 |||| ||||| |||||||| || ||||| |||||||||||||| Sbjct: 30769029 tgcaactgtagcccattgagaaccccacatttccatatgcact 30769071
>gb|AF237672.1|AF237672 Arabidopsis thaliana sodium transporter (HKT1) mRNA, complete cds Length = 1521 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 355 cccacgtttccatatgcacttacaacttcga 385 |||||||||||||||||||| | |||||||| Sbjct: 1325 cccacgtttccatatgcactgataacttcga 1295
>emb|AJ491853.1|OSA491853 Oryza sativa (japonica cultivar-group) partial hkt7 gene for putative sodium transporter, exons 1-3 Length = 5400 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 332 tgcagctgtaacccattgacaagcccacgtttccatatgcact 374 |||| ||||| |||||||| || ||||| |||||||||||||| Sbjct: 4783 tgcaactgtagcccattgagaaccccacatttccatatgcact 4741
>gb|AF176035.1|AF176035 Eucalyptus camaldulensis potassium-sodium symporter HKT1 mRNA, complete cds Length = 1992 Score = 44.1 bits (22), Expect = 0.64 Identities = 55/66 (83%) Strand = Plus / Minus Query: 355 cccacgtttccatatgcacttacaacttcgaacagtatgctcaaaacattgaaattaagt 414 ||||| ||||||||||| ||||| ||||||| || ||| |||| || |||||||| || Sbjct: 1517 cccacatttccatatgcgcttaccacttcgaccacgatgttcaacacgttgaaattgagg 1458 Query: 415 ggatct 420 |||||| Sbjct: 1457 ggatct 1452
>dbj|AK121973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108I05, full insert sequence Length = 1381 Score = 44.1 bits (22), Expect = 0.64 Identities = 58/70 (82%) Strand = Plus / Plus Query: 649 agattcaccagcatgcctcgcattggttgattgaaaaagagcacctactatcttttggta 708 ||||||||| |||||||| |||||| || ||||| ||||| |||||||||||| || Sbjct: 151 agattcacctgcatgcctagcattgaccgactgaaatagagcggatactatcttttgata 210 Query: 709 gctgctcatt 718 | |||||||| Sbjct: 211 gttgctcatt 220
>emb|Z81084.1|CEF46A9 Caenorhabditis elegans Cosmid F46A9, complete sequence Length = 29867 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 cttccatgcttttcctccctt 203 ||||||||||||||||||||| Sbjct: 14297 cttccatgcttttcctccctt 14277
>gb|AF367366.1|AF367366 Mesembryanthemum crystallinum putative potassium-sodium transporter mRNA, complete cds Length = 1904 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 439 tcagtgatgcaaattagcatgacaaagatagccaaataaga 479 ||||||||||||| | ||| |||||||||||||| ||||| Sbjct: 1398 tcagtgatgcaaacaatcataacaaagatagccaagtaaga 1358
>gb|AC115877.13| Mus musculus chromosome 15, clone RP24-358H21, complete sequence Length = 169136 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 cagtcctccaacaacccttt 515 |||||||||||||||||||| Sbjct: 69111 cagtcctccaacaacccttt 69092
>ref|NM_117099.3| Arabidopsis thaliana HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1); sodium ion transporter AT4G10310 (HKT1) mRNA, complete cds Length = 1685 Score = 40.1 bits (20), Expect = 10.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 358 acgtttccatatgcacttacaacttcga 385 ||||||||||||||||| | |||||||| Sbjct: 1346 acgtttccatatgcactgataacttcga 1319
>gb|AC166800.5| Mus musculus chromosome 1, clone RP24-260I21, complete sequence Length = 162752 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gctatctaagcttccatgct 192 |||||||||||||||||||| Sbjct: 78416 gctatctaagcttccatgct 78397
>emb|AL032618.1|CEY42A5A Caenorhabditis elegans YAC Y42A5A, complete sequence Length = 22557 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 cagcaaacccatatgaagca 297 |||||||||||||||||||| Sbjct: 4802 cagcaaacccatatgaagca 4821
>ref|XM_546397.2| PREDICTED: Canis familiaris similar to PR domain containing 10 isoform 2, transcript variant 1 (LOC489279), mRNA Length = 3997 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 650 gattcaccagcatgcctcgc 669 |||||||||||||||||||| Sbjct: 2233 gattcaccagcatgcctcgc 2214
>ref|XM_851849.1| PREDICTED: Canis familiaris similar to PR domain containing 10 isoform 2, transcript variant 2 (LOC489279), mRNA Length = 3985 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 650 gattcaccagcatgcctcgc 669 |||||||||||||||||||| Sbjct: 2221 gattcaccagcatgcctcgc 2202
>gb|AC118728.12| Mus musculus chromosome 1, clone RP24-168F13, complete sequence Length = 176970 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gctatctaagcttccatgct 192 |||||||||||||||||||| Sbjct: 9390 gctatctaagcttccatgct 9371
>emb|AL445569.1| Human DNA sequence from clone RP11-135M8 on chromosome 6 Contains the 5' end of the KCNQ5 gene for potassium voltage-gated channel, KQT-like subfamily member 5, the 5' parts of two novel genes and a CpG island, complete sequence Length = 47057 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 aacagtatgctcaaaacatt 404 |||||||||||||||||||| Sbjct: 6493 aacagtatgctcaaaacatt 6512
>gb|AC009509.7| Homo sapiens 12p11-37.2-54.4 BAC RP11-1060J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 192690 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 ttttctgttgtatctcttct 532 |||||||||||||||||||| Sbjct: 130946 ttttctgttgtatctcttct 130965
>gb|AC100843.2| Homo sapiens chromosome 18, clone RP11-640A1, complete sequence Length = 180160 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 gacaaagatagccaaataag 478 |||||||||||||||||||| Sbjct: 65246 gacaaagatagccaaataag 65265
>emb|BX323050.6| Zebrafish DNA sequence from clone DKEYP-1G12 in linkage group 23, complete sequence Length = 56129 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 acagtatgctcaaaacattg 405 |||||||||||||||||||| Sbjct: 33661 acagtatgctcaaaacattg 33642
>gb|AF298900.1|AF298900 Homo sapiens clone 390j15 chromosome 18 map 18q21, complete sequence Length = 180000 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 gacaaagatagccaaataag 478 |||||||||||||||||||| Sbjct: 136312 gacaaagatagccaaataag 136293
>ref|NM_073420.1| Caenorhabditis elegans Y42A5A.2 (Y42A5A.2) mRNA, complete cds Length = 1923 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cagcaaacccatatgaagca 297 |||||||||||||||||||| Sbjct: 1054 cagcaaacccatatgaagca 1035
>emb|BX827043.1|CNS0A3C1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB8ZD07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1660 Score = 40.1 bits (20), Expect = 10.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 358 acgtttccatatgcacttacaacttcga 385 ||||||||||||||||| | |||||||| Sbjct: 1336 acgtttccatatgcactgataacttcga 1309
>emb|BX826395.1|CNS0A3DM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZB03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1663 Score = 40.1 bits (20), Expect = 10.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 358 acgtttccatatgcacttacaacttcga 385 ||||||||||||||||| | |||||||| Sbjct: 1333 acgtttccatatgcactgataacttcga 1306
>gb|BT005751.1| Arabidopsis thaliana clone RAFL15-31-F16 (R50120) putative potassium uptake transporter (At4g10310) mRNA, complete cds Length = 1705 Score = 40.1 bits (20), Expect = 10.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 358 acgtttccatatgcacttacaacttcga 385 ||||||||||||||||| | |||||||| Sbjct: 1346 acgtttccatatgcactgataacttcga 1319
>ref|XM_576373.1| PREDICTED: Rattus norvegicus similar to PR domain containing 10 isoform 2 (LOC500964), mRNA Length = 3723 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 650 gattcaccagcatgcctcgc 669 |||||||||||||||||||| Sbjct: 2272 gattcaccagcatgcctcgc 2253
>gb|AC161879.5| Mus musculus BAC clone RP23-264A15 from chromosome 1, complete sequence Length = 206995 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 aagtggatctgtggtcagtgcttc 434 |||||||||| ||||||||||||| Sbjct: 99408 aagtggatctttggtcagtgcttc 99431 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,105,482 Number of Sequences: 3902068 Number of extensions: 6105482 Number of successful extensions: 116550 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 116383 Number of HSP's gapped (non-prelim): 149 length of query: 728 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 705 effective length of database: 17,143,297,704 effective search space: 12086024881320 effective search space used: 12086024881320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)