Clone Information

BLAST Search Result

Clone Name	rbaal8l01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_470038.1\| Oryza sativa (japonica cultivar-group), mRNA	200	3e-48
2	dbj\|AK070287.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	200	3e-48
3	dbj\|AK060962.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	200	3e-48
4	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	129	9e-27
5	gb\|AC135958.2\| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genom...	129	9e-27
6	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	129	9e-27
7	ref\|XM_478766.1\| Oryza sativa (japonica cultivar-group), mRNA	58	3e-05
8	dbj\|AK067599.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	3e-05
9	gb\|AY107170.1\| Zea mays PCO088271 mRNA sequence	54	4e-04
10	ref\|NM_121991.2\| Arabidopsis thaliana unknown protein AT5G19855 ...	52	0.002
11	gb\|BT005149.1\| Arabidopsis thaliana clone U20491 unknown protein...	52	0.002
12	gb\|BT004014.1\| Arabidopsis thaliana clone RAFL15-10-J17 (R20491)...	52	0.002
13	gb\|AY088169.1\| Arabidopsis thaliana clone 42402 mRNA, complete s...	52	0.002
14	gb\|CP000133.1\| Rhizobium etli CFN 42, complete genome	46	0.11
15	gb\|L77117.1\| Methanocaldococcus jannaschii DSM 2661, complete ge...	44	0.42
16	gb\|AY020312.1\| Oryza sativa microsatellite MRG2637 containing (G...	42	1.7
17	emb\|BX957235.12\| Zebrafish DNA sequence from clone DKEY-84K17 in...	42	1.7
18	gb\|AC165343.3\| Mus musculus BAC clone RP23-476C24 from chromosom...	42	1.7
19	emb\|AL607001.4\|OSJN00128 Oryza sativa genomic DNA, chromosome 4,...	42	1.7
20	gb\|AC164561.2\| Mus musculus BAC clone RP23-187G5 from chromosome...	42	1.7
21	dbj\|AK055547.1\| Homo sapiens cDNA FLJ30985 fis, clone HHDPC2000462	42	1.7
22	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
23	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
24	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
25	dbj\|AP005116.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
26	dbj\|AP003708.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
27	emb\|CT033780.10\| Mouse DNA sequence from clone RP24-329E14 on ch...	42	1.7
28	ref\|XM_520379.1\| PREDICTED: Pan troglodytes LOC464874 (LOC464874...	40	6.6
29	gb\|AC158556.9\| Mus musculus chromosome 15, clone RP23-140F20, co...	40	6.6
30	emb\|Z78541.1\|CEF19D8 Caenorhabditis elegans Cosmid F19D8, comple...	40	6.6
31	gb\|AC116033.3\| Zea mays genomic clone ZM15C05 sequence, complete...	40	6.6
32	gb\|BC064582.1\| Homo sapiens KIAA1984, mRNA (cDNA clone IMAGE:574...	40	6.6
33	emb\|AL355987.31\| Human DNA sequence from clone RP11-216L13 on ch...	40	6.6
34	ref\|XM_779451.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	6.6
35	emb\|AL731600.3\|OSJN00243 Oryza sativa genomic DNA, chromosome 4,...	40	6.6
36	emb\|AL606621.3\|OSJN00054 Oryza sativa genomic DNA, chromosome 4,...	40	6.6
37	emb\|AL731658.20\| Mouse DNA sequence from clone RP23-329P17 on ch...	40	6.6
38	gb\|AC023102.6\| Homo sapiens chromosome 8, clone RP11-414L17, com...	40	6.6
39	dbj\|AK094220.1\| Homo sapiens cDNA FLJ36901 fis, clone BRACE2002206	40	6.6
40	dbj\|AK092639.1\| Homo sapiens cDNA FLJ35320 fis, clone PROST2012007	40	6.6
41	dbj\|AK090683.1\| Homo sapiens cDNA FLJ33364 fis, clone BRACE2005448	40	6.6
42	gb\|AC112173.3\| Homo sapiens chromosome 5 clone CTD-2275D10, comp...	40	6.6
43	ref\|NM_001039374.3\| Homo sapiens KIAA1984 (KIAA1984), mRNA	40	6.6
44	gb\|AC113143.3\| Homo sapiens chromosome 8, clone RP11-33I11, comp...	40	6.6
45	gb\|AC093251.2\| Homo sapiens chromosome 5 clone RP11-156N15, comp...	40	6.6
46	dbj\|AK154298.1\| Mus musculus NOD-derived CD11c +ve dendritic cel...	40	6.6
47	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.6
48	dbj\|AB074447.1\| Macaca fascicularis testis cDNA clone:QtsA-19877...	40	6.6
49	dbj\|AP004730.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.6
50	dbj\|AP004328.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.6
51	emb\|BX469898.9\| Zebrafish DNA sequence from clone DKEY-180H12 in...	40	6.6
52	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.6
53	emb\|AL772426.5\|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310...	40	6.6
54	emb\|AL772358.6\| Mouse DNA sequence from clone RP23-397K2 on chro...	40	6.6
55	dbj\|AB075864.1\| Homo sapiens mRNA for KIAA1984 protein	40	6.6

>ref|XM_470038.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1001

 Score =  200 bits (101), Expect = 3e-48
 Identities = 163/184 (88%)
 Strand = Plus / Minus

                                                                       
Query: 301 tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 360
           |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 609 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 550

                                                                       
Query: 361 ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtcgca 420
           ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| ||||| ||
Sbjct: 549 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtcaca 490

                                                                       
Query: 421 cttcttgatccatttcccgtacaagctaagcctggntatcatcactcgctctgcaagctc 480
            |||||||||||||| | |||||||  |||||| | ||||||||||||||||||||||||
Sbjct: 489 tttcttgatccatttgctgtacaagtgaagcctagttatcatcactcgctctgcaagctc 430

               
Query: 481 ctgc 484
           ||||
Sbjct: 429 ctgc 426

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>dbj|AK070287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049O16, full
           insert sequence
          Length = 983

 Score =  200 bits (101), Expect = 3e-48
 Identities = 163/184 (88%)
 Strand = Plus / Minus

                                                                       
Query: 301 tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 360
           |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 739 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 680

                                                                       
Query: 361 ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtcgca 420
           ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| ||||| ||
Sbjct: 679 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtcaca 620

                                                                       
Query: 421 cttcttgatccatttcccgtacaagctaagcctggntatcatcactcgctctgcaagctc 480
            |||||||||||||| | |||||||  |||||| | ||||||||||||||||||||||||
Sbjct: 619 tttcttgatccatttgctgtacaagtgaagcctagttatcatcactcgctctgcaagctc 560

               
Query: 481 ctgc 484
           ||||
Sbjct: 559 ctgc 556

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>dbj|AK060962.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-A06, full
           insert sequence
          Length = 1220

 Score =  200 bits (101), Expect = 3e-48
 Identities = 163/184 (88%)
 Strand = Plus / Minus

                                                                       
Query: 301 tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 360
           |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 841 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 782

                                                                       
Query: 361 ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtcgca 420
           ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| ||||| ||
Sbjct: 781 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtcaca 722

                                                                       
Query: 421 cttcttgatccatttcccgtacaagctaagcctggntatcatcactcgctctgcaagctc 480
            |||||||||||||| | |||||||  |||||| | ||||||||||||||||||||||||
Sbjct: 721 tttcttgatccatttgctgtacaagtgaagcctagttatcatcactcgctctgcaagctc 662

               
Query: 481 ctgc 484
           ||||
Sbjct: 661 ctgc 658

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 9e-27
 Identities = 104/117 (88%)
 Strand = Plus / Minus

                                                                            
Query: 301      tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 360
                |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 33469278 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 33469219

                                                                         
Query: 361      ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtc 417
                ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| |||||
Sbjct: 33469218 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtc 33469162



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                            
Query: 424      cttgatccatttcccgtacaagctaagcctggntatcatcactcgctctgcaagctcctg 483
                |||||||||||| | |||||||  |||||| | |||||||||||||||||||||||||||
Sbjct: 33469070 cttgatccatttgctgtacaagtgaagcctagttatcatcactcgctctgcaagctcctg 33469011

                 
Query: 484      c 484
                |
Sbjct: 33469010 c 33469010

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>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
             sequence
          Length = 154555

 Score =  129 bits (65), Expect = 9e-27
 Identities = 104/117 (88%)
 Strand = Plus / Plus

                                                                         
Query: 301   tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 360
             |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 28833 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 28892

                                                                      
Query: 361   ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtc 417
             ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| |||||
Sbjct: 28893 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtc 28949



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                         
Query: 424   cttgatccatttcccgtacaagctaagcctggntatcatcactcgctctgcaagctcctg 483
             |||||||||||| | |||||||  |||||| | |||||||||||||||||||||||||||
Sbjct: 29041 cttgatccatttgctgtacaagtgaagcctagttatcatcactcgctctgcaagctcctg 29100

              
Query: 484   c 484
             |
Sbjct: 29101 c 29101

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 9e-27
 Identities = 104/117 (88%)
 Strand = Plus / Minus

                                                                            
Query: 301      tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 360
                |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 33559788 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 33559729

                                                                         
Query: 361      ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtc 417
                ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| |||||
Sbjct: 33559728 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtc 33559672



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                            
Query: 424      cttgatccatttcccgtacaagctaagcctggntatcatcactcgctctgcaagctcctg 483
                |||||||||||| | |||||||  |||||| | |||||||||||||||||||||||||||
Sbjct: 33559580 cttgatccatttgctgtacaagtgaagcctagttatcatcactcgctctgcaagctcctg 33559521

                 
Query: 484      c 484
                |
Sbjct: 33559520 c 33559520

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>ref|XM_478766.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 821

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                       
Query: 373 ctccaggttctcctccgagatcttctcgtacatcttcgcgtggtcgcacttcttgatcca 432
           |||||| ||||| | ||| |||||||||||||| || || ||||| || |||||||||||
Sbjct: 571 ctccagattctcattcgaaatcttctcgtacatttttgcatggtcacatttcttgatcca 512

                        
Query: 433 tttcccgtacaag 445
           ||| | |||||||
Sbjct: 511 tttgctgtacaag 499

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>dbj|AK067599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109B01, full
           insert sequence
          Length = 820

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                       
Query: 373 ctccaggttctcctccgagatcttctcgtacatcttcgcgtggtcgcacttcttgatcca 432
           |||||| ||||| | ||| |||||||||||||| || || ||||| || |||||||||||
Sbjct: 570 ctccagattctcattcgaaatcttctcgtacatttttgcatggtcacatttcttgatcca 511

                        
Query: 433 tttcccgtacaag 445
           ||| | |||||||
Sbjct: 510 tttgctgtacaag 498

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>gb|AY107170.1| Zea mays PCO088271 mRNA sequence
          Length = 637

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 422 ttcttgatccatttcccgtacaagctaagcctggntatcatcactcgctctgcaagctcc 481
           ||||| |||||||||||||||| |  ||||||||  | ||||||   |||||| ||||||
Sbjct: 636 ttctttatccatttcccgtacaggtgaagcctggtgaccatcacnnnctctgcgagctcc 577

                  
Query: 482 tgcctct 488
           |||||||
Sbjct: 576 tgcctct 570

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>ref|NM_121991.2| Arabidopsis thaliana unknown protein AT5G19855 mRNA, complete cds
          Length = 941

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                       
Query: 404 atcttcgcgtggtcgcacttcttgatccatttcccgtacaagctaagcctggntatcatc 463
           |||||| | |||||||| |||||||||||||| || ||||||  ||| |  |  ||||||
Sbjct: 653 atcttcccatggtcgcatttcttgatccatttgccatacaagtgaagacgcgtgatcatc 594

                                    
Query: 464 actcgctctgcaagctcctgcctct 488
           ||||  |||||||||||||| ||||
Sbjct: 593 actctttctgcaagctcctgactct 569

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>gb|BT005149.1| Arabidopsis thaliana clone U20491 unknown protein (At5g19855) mRNA,
           complete cds
          Length = 643

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                       
Query: 404 atcttcgcgtggtcgcacttcttgatccatttcccgtacaagctaagcctggntatcatc 463
           |||||| | |||||||| |||||||||||||| || ||||||  ||| |  |  ||||||
Sbjct: 518 atcttcccatggtcgcatttcttgatccatttgccatacaagtgaagacgcgtgatcatc 459

                                    
Query: 464 actcgctctgcaagctcctgcctct 488
           ||||  |||||||||||||| ||||
Sbjct: 458 actctttctgcaagctcctgactct 434

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>gb|BT004014.1| Arabidopsis thaliana clone RAFL15-10-J17 (R20491) unknown protein
           (At5g19855) mRNA, complete cds
          Length = 926

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                       
Query: 404 atcttcgcgtggtcgcacttcttgatccatttcccgtacaagctaagcctggntatcatc 463
           |||||| | |||||||| |||||||||||||| || ||||||  ||| |  |  ||||||
Sbjct: 620 atcttcccatggtcgcatttcttgatccatttgccatacaagtgaagacgcgtgatcatc 561

                                    
Query: 464 actcgctctgcaagctcctgcctct 488
           ||||  |||||||||||||| ||||
Sbjct: 560 actctttctgcaagctcctgactct 536

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>gb|AY088169.1| Arabidopsis thaliana clone 42402 mRNA, complete sequence
          Length = 939

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                       
Query: 404 atcttcgcgtggtcgcacttcttgatccatttcccgtacaagctaagcctggntatcatc 463
           |||||| | |||||||| |||||||||||||| || ||||||  ||| |  |  ||||||
Sbjct: 653 atcttcccatggtcgcatttcttgatccatttgccatacaagtgaagacgcgtgatcatc 594

                                    
Query: 464 actcgctctgcaagctcctgcctct 488
           ||||  |||||||||||||| ||||
Sbjct: 593 actctttctgcaagctcctgactct 569

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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 367     catcagctccaggttctcctccg 389
               |||||||||||||||||||||||
Sbjct: 2436924 catcagctccaggttctcctccg 2436946

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>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 367    catcagctccaggttctcctcc 388
              ||||||||||||||||||||||
Sbjct: 315014 catcagctccaggttctcctcc 314993

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>gb|AY020312.1| Oryza sativa microsatellite MRG2637 containing (GA)X13, genomic
           sequence
          Length = 226

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 358 cctctcccgcatcagctccag 378
           |||||||||||||||||||||
Sbjct: 24  cctctcccgcatcagctccag 44

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>emb|BX957235.12| Zebrafish DNA sequence from clone DKEY-84K17 in linkage group 17,
            complete sequence
          Length = 171764

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 169  acattatatacacatgtttga 189
            |||||||||||||||||||||
Sbjct: 9661 acattatatacacatgtttga 9681

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>gb|AC165343.3| Mus musculus BAC clone RP23-476C24 from chromosome 17, complete
             sequence
          Length = 190724

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 197   gtgcgtgcatgcatgcatagt 217
             |||||||||||||||||||||
Sbjct: 91781 gtgcgtgcatgcatgcatagt 91801

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>emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22,
             complete sequence
          Length = 164572

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 358   cctctcccgcatcagctccag 378
             |||||||||||||||||||||
Sbjct: 33138 cctctcccgcatcagctccag 33118

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>gb|AC164561.2| Mus musculus BAC clone RP23-187G5 from chromosome 12, complete sequence
          Length = 210186

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 195   tcgtgcgtgcatgcatgcata 215
             |||||||||||||||||||||
Sbjct: 20422 tcgtgcgtgcatgcatgcata 20402

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>dbj|AK055547.1| Homo sapiens cDNA FLJ30985 fis, clone HHDPC2000462
          Length = 2386

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 369 tcagctccaggttctcctccg 389
           |||||||||||||||||||||
Sbjct: 646 tcagctccaggttctcctccg 666

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 358      cctctcccgcatcagctccag 378
                |||||||||||||||||||||
Sbjct: 28757820 cctctcccgcatcagctccag 28757840



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 196      cgtgcgtgcatgcatgcata 215
                ||||||||||||||||||||
Sbjct: 19360696 cgtgcgtgcatgcatgcata 19360677

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 358     cctctcccgcatcagctccag 378
               |||||||||||||||||||||
Sbjct: 2075073 cctctcccgcatcagctccag 2075093



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 171      attatatacacatgtttgactcaa 194
                |||||||||||||||||| |||||
Sbjct: 19030412 attatatacacatgtttgtctcaa 19030435

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 196      cgtgcgtgcatgcatgcatag 216
                |||||||||||||||||||||
Sbjct: 22090139 cgtgcgtgcatgcatgcatag 22090159

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>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0703B01
          Length = 137445

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 196   cgtgcgtgcatgcatgcatag 216
             |||||||||||||||||||||
Sbjct: 64038 cgtgcgtgcatgcatgcatag 64058

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>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0041F13
          Length = 163230

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 358   cctctcccgcatcagctccag 378
             |||||||||||||||||||||
Sbjct: 95935 cctctcccgcatcagctccag 95955

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>emb|CT033780.10| Mouse DNA sequence from clone RP24-329E14 on chromosome 12, complete
              sequence
          Length = 205515

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 195    tcgtgcgtgcatgcatgcata 215
              |||||||||||||||||||||
Sbjct: 102681 tcgtgcgtgcatgcatgcata 102661

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>ref|XM_520379.1| PREDICTED: Pan troglodytes LOC464874 (LOC464874), mRNA
          Length = 2279

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 370  cagctccaggttctcctccg 389
            ||||||||||||||||||||
Sbjct: 1349 cagctccaggttctcctccg 1330

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>gb|AC158556.9| Mus musculus chromosome 15, clone RP23-140F20, complete sequence
          Length = 203053

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 159   tcacatacgtacattatatacaca 182
             |||||||| |||||||||||||||
Sbjct: 79981 tcacatacatacattatatacaca 80004

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>emb|Z78541.1|CEF19D8 Caenorhabditis elegans Cosmid F19D8, complete sequence
          Length = 29400

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 239  gatgagctaattaattgatgaagt 262
            ||||| ||||||||||||||||||
Sbjct: 1145 gatgatctaattaattgatgaagt 1168

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>gb|AC116033.3| Zea mays genomic clone ZM15C05 sequence, complete sequence
          Length = 99606

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 89    gcgaatggcacgaagcagtttgca 112
             ||||||||||||||||||| ||||
Sbjct: 78893 gcgaatggcacgaagcagtatgca 78870

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>gb|BC064582.1| Homo sapiens KIAA1984, mRNA (cDNA clone IMAGE:5742861), complete cds
          Length = 1822

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 370  cagctccaggttctcctccg 389
            ||||||||||||||||||||
Sbjct: 1048 cagctccaggttctcctccg 1029

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>emb|AL355987.31| Human DNA sequence from clone RP11-216L13 on chromosome 9 Contains the
             3' end of the gene for a novel protein similar to mouse
             pancreatitis-induced protein 49  (PIP49), the 5' end of a
             novel gene (FLJ30346), five novel genes  (containing
             LOC158062, KIAA1984, FLJ35320, FLJ36901, FLJ30985,
             FLJ10101, FLJ37063 FLJ13045, FLJ40767), a nucleolin (NCL)
             pseudogene, the gene for a novel protein similar to mouse
             lipocalin 8 (EP17, Lcn5), a 13kD lysosomal H+ transporting
             ATPase V1 subunit G isoform 1 (ATP6V1G1) pseudogene, the
             gene for phosphohistidine phosphatase (PHP14), the gene
             for a novel protein similar to rat apical early endosomal
             glycoprotein (LOC252882), the EDF1 gene for endothelial
             differentiation-related factor 1 (MBF1, EDF-1), the 5' end
             of the TRAF2 gene for TNF receptor-associated factor 2
             (TRAP, TRAP3) and ten CpG islands, complete sequence
          Length = 182003

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   cagctccaggttctcctccg 389
             ||||||||||||||||||||
Sbjct: 84616 cagctccaggttctcctccg 84597

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>ref|XM_779451.1| PREDICTED: Strongylocentrotus purpuratus similar to potassium
            voltage-gated channel, subfamily H, member 8 (LOC579331),
            mRNA
          Length = 3177

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  gatcttctccgtgttggtgt 326
            ||||||||||||||||||||
Sbjct: 1326 gatcttctccgtgttggtgt 1307

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>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08,
              complete sequence
          Length = 145670

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    cgtgcgtgcatgcatgcata 215
              ||||||||||||||||||||
Sbjct: 142528 cgtgcgtgcatgcatgcata 142509

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>emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072K14,
             complete sequence
          Length = 139855

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   cgtgcgtgcatgcatgcata 215
             ||||||||||||||||||||
Sbjct: 11948 cgtgcgtgcatgcatgcata 11929

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>emb|AL731658.20| Mouse DNA sequence from clone RP23-329P17 on chromosome 11 Contains the
              Lif gene for leukemia inhibitory factor, two novel genes,
              the 3' end of a novel gene and a CpG island, complete
              sequence
          Length = 137519

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 39     cagaacacaggcacattatacact 62
              |||||||||| |||||||||||||
Sbjct: 130951 cagaacacagccacattatacact 130974

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>gb|AC023102.6| Homo sapiens chromosome 8, clone RP11-414L17, complete sequence
          Length = 175263

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    cgtgcgtgcatgcatgcata 215
              ||||||||||||||||||||
Sbjct: 164505 cgtgcgtgcatgcatgcata 164486

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>dbj|AK094220.1| Homo sapiens cDNA FLJ36901 fis, clone BRACE2002206
          Length = 2124

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 cagctccaggttctcctccg 389
           ||||||||||||||||||||
Sbjct: 483 cagctccaggttctcctccg 464

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>dbj|AK092639.1| Homo sapiens cDNA FLJ35320 fis, clone PROST2012007
          Length = 2323

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 370  cagctccaggttctcctccg 389
            ||||||||||||||||||||
Sbjct: 1320 cagctccaggttctcctccg 1301

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>dbj|AK090683.1| Homo sapiens cDNA FLJ33364 fis, clone BRACE2005448
          Length = 1555

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 cagctccaggttctcctccg 389
           ||||||||||||||||||||
Sbjct: 638 cagctccaggttctcctccg 619

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>gb|AC112173.3| Homo sapiens chromosome 5 clone CTD-2275D10, complete sequence
          Length = 125551

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 191   tcaatcgtgcgtgcatgcatgcat 214
             |||||| |||||||||||||||||
Sbjct: 19274 tcaatcctgcgtgcatgcatgcat 19251

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>ref|NM_001039374.3| Homo sapiens KIAA1984 (KIAA1984), mRNA
          Length = 1740

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 370  cagctccaggttctcctccg 389
            ||||||||||||||||||||
Sbjct: 1050 cagctccaggttctcctccg 1031

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>gb|AC113143.3| Homo sapiens chromosome 8, clone RP11-33I11, complete sequence
          Length = 157672

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   cgtgcgtgcatgcatgcata 215
             ||||||||||||||||||||
Sbjct: 10847 cgtgcgtgcatgcatgcata 10828

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>gb|AC093251.2| Homo sapiens chromosome 5 clone RP11-156N15, complete sequence
          Length = 62147

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 191  tcaatcgtgcgtgcatgcatgcat 214
            |||||| |||||||||||||||||
Sbjct: 3550 tcaatcctgcgtgcatgcatgcat 3573

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>dbj|AK154298.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630016D06
            product:unclassifiable, full insert sequence
          Length = 4040

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  tcgtgcgtgcatgcatgcat 214
            ||||||||||||||||||||
Sbjct: 2727 tcgtgcgtgcatgcatgcat 2708

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 196      cgtgcgtgcatgcatgcata 215
                ||||||||||||||||||||
Sbjct: 24130000 cgtgcgtgcatgcatgcata 24130019

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>dbj|AB074447.1| Macaca fascicularis testis cDNA clone:QtsA-19877, similar to human
            KIAA1984 protein (KIAA1984), mRNA, NM_032874
          Length = 2296

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 370  cagctccaggttctcctccg 389
            ||||||||||||||||||||
Sbjct: 1040 cagctccaggttctcctccg 1021

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>dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0009J19
          Length = 156988

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 171    attatatacacatgtttgactcaa 194
              |||||||||||||||||| |||||
Sbjct: 123082 attatatacacatgtttgtctcaa 123105

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>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1616_B03
          Length = 96081

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 171   attatatacacatgtttgactcaa 194
             |||||||||||||||||| |||||
Sbjct: 27896 attatatacacatgtttgtctcaa 27919

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>emb|BX469898.9| Zebrafish DNA sequence from clone DKEY-180H12 in linkage group 18,
             complete sequence
          Length = 185729

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   tcgtgcgtgcatgcatgcat 214
             ||||||||||||||||||||
Sbjct: 56092 tcgtgcgtgcatgcatgcat 56073

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 196      cgtgcgtgcatgcatgcata 215
                ||||||||||||||||||||
Sbjct: 24058206 cgtgcgtgcatgcatgcata 24058225

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>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132733

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   cgtgcgtgcatgcatgcata 215
             ||||||||||||||||||||
Sbjct: 14691 cgtgcgtgcatgcatgcata 14710

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>emb|AL772358.6| Mouse DNA sequence from clone RP23-397K2 on chromosome 4, complete
             sequence
          Length = 173518

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   tcgtgcgtgcatgcatgcat 214
             ||||||||||||||||||||
Sbjct: 87658 tcgtgcgtgcatgcatgcat 87677

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>dbj|AB075864.1| Homo sapiens mRNA for KIAA1984 protein
          Length = 4207

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 370  cagctccaggttctcctccg 389
            ||||||||||||||||||||
Sbjct: 1163 cagctccaggttctcctccg 1144


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,374,421
Number of Sequences: 3902068
Number of extensions: 3374421
Number of successful extensions: 66121
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65686
Number of HSP's gapped (non-prelim): 427
length of query: 488
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 466
effective length of database: 17,147,199,772
effective search space: 7990595093752
effective search space used: 7990595093752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result