ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39o22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FTRC_MAIZE (P41347) Ferredoxin-thioredoxin reductase catalytic c... 80 2e-15
2FTRC_SOYBN (O49856) Ferredoxin-thioredoxin reductase catalytic c... 72 5e-13
3FTRC1_SPIOL (P41348) Ferredoxin-thioredoxin reductase catalytic ... 72 5e-13
4FTRC2_SPIOL (P41349) Ferredoxin-thioredoxin reductase catalytic ... 71 1e-12
5FTRC_CYACA (Q9TM25) Ferredoxin-thioredoxin reductase, catalytic ... 57 2e-08
6FTRC_GUITH (O78461) Ferredoxin-thioredoxin reductase, catalytic ... 54 2e-07
7FTRC_PORPU (P51386) Ferredoxin-thioredoxin reductase, catalytic ... 53 4e-07
8PRL_ICTPU (P51904) Prolactin precursor (PRL) 30 2.7
9PRL_DICLA (P48249) Prolactin precursor (PRL) 30 3.5
10PRL2_OREMO (P09318) Prolactin-2 precursor (Prolactin II) (PRL-177) 30 3.5
11PRL1_OREMO (P09319) Prolactin-1 precursor (Prolactin I) (PRL-188) 29 5.9
12LPS1B_LYTPI (Q03975) Calcium-binding protein LPS1-beta (Fragment) 28 7.7

>FTRC_MAIZE (P41347) Ferredoxin-thioredoxin reductase catalytic chain,|
           chloroplast precursor (EC 1.18.-.-) (FTR-C)
           (Ferredoxin-thioredoxin reductase subunit B) (FTR-B)
          Length = 152

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 36/40 (90%), Positives = 38/40 (95%)
 Frame = -1

Query: 437 VPMRERKECHCMLFLTPDNDFAGEDQAISLEEIKEATSKY 318
           VPMRERKECHCMLFLTPDNDFAG+DQ IS EEIKEATSK+
Sbjct: 113 VPMRERKECHCMLFLTPDNDFAGKDQVISFEEIKEATSKF 152



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>FTRC_SOYBN (O49856) Ferredoxin-thioredoxin reductase catalytic chain,|
           chloroplast precursor (EC 1.18.-.-) (FTR-C)
          Length = 144

 Score = 72.4 bits (176), Expect = 5e-13
 Identities = 31/38 (81%), Positives = 36/38 (94%)
 Frame = -1

Query: 437 VPMRERKECHCMLFLTPDNDFAGEDQAISLEEIKEATS 324
           VPMRERKECHCMLFLTPDNDFAG +Q I+L+EIKE+T+
Sbjct: 105 VPMRERKECHCMLFLTPDNDFAGNEQTITLDEIKESTA 142



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>FTRC1_SPIOL (P41348) Ferredoxin-thioredoxin reductase catalytic chain,|
           chloroplast precursor (EC 1.18.-.-) (FTR-C)
           (Ferredoxin-thioredoxin reductase subunit B) (FTR-B)
           (B2)
          Length = 144

 Score = 72.4 bits (176), Expect = 5e-13
 Identities = 31/38 (81%), Positives = 36/38 (94%)
 Frame = -1

Query: 437 VPMRERKECHCMLFLTPDNDFAGEDQAISLEEIKEATS 324
           VPMRERKECHCMLFLTPDNDFAG++Q I+L+EI+E TS
Sbjct: 105 VPMRERKECHCMLFLTPDNDFAGKEQTITLDEIREVTS 142



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>FTRC2_SPIOL (P41349) Ferredoxin-thioredoxin reductase catalytic chain,|
           chloroplast precursor (EC 1.18.-.-) (FTR-C)
           (Ferredoxin-thioredoxin reductase subunit B) (FTR-B)
           (B1)
          Length = 148

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 30/38 (78%), Positives = 35/38 (92%)
 Frame = -1

Query: 437 VPMRERKECHCMLFLTPDNDFAGEDQAISLEEIKEATS 324
           VPMRERKECHCMLFLTP+NDFAG+DQ I L+EI+E T+
Sbjct: 109 VPMRERKECHCMLFLTPENDFAGKDQTIGLDEIREVTA 146



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>FTRC_CYACA (Q9TM25) Ferredoxin-thioredoxin reductase, catalytic chain (EC|
           1.18.-.-) (FTR-C) (Ferredoxin-thioredoxin reductase
           subunit B) (FTR-B)
          Length = 111

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = -1

Query: 437 VPMRERKECHCMLFLTPDNDFAGEDQAISLEEIKEATS 324
           VPMRERKECHCMLFL P N+F+GE Q IS +++++  S
Sbjct: 74  VPMRERKECHCMLFLQPSNEFSGESQLISKDDLQKHLS 111



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>FTRC_GUITH (O78461) Ferredoxin-thioredoxin reductase, catalytic chain (EC|
           1.18.-.-) (FTR-C) (Ferredoxin-thioredoxin reductase
           subunit B) (FTR-B)
          Length = 102

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = -1

Query: 437 VPMRERKECHCMLFLTPDNDFAGEDQAI 354
           VPMRERKECHCMLFLT DN+FAG  Q +
Sbjct: 75  VPMRERKECHCMLFLTKDNEFAGSSQTL 102



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>FTRC_PORPU (P51386) Ferredoxin-thioredoxin reductase, catalytic chain (EC|
           1.18.-.-) (FTR-C) (Ferredoxin-thioredoxin reductase
           subunit B) (FTR-B)
          Length = 118

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 23/35 (65%), Positives = 26/35 (74%)
 Frame = -1

Query: 437 VPMRERKECHCMLFLTPDNDFAGEDQAISLEEIKE 333
           VPMRERKECHCMLFLTPDN+F  + Q I    + E
Sbjct: 79  VPMRERKECHCMLFLTPDNEFTSDLQEIDKTTLLE 113



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>PRL_ICTPU (P51904) Prolactin precursor (PRL)|
          Length = 212

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +1

Query: 268 TDRL*PPLEQKQALSG*YLDVASLISSKLMAWSSPAKSLSGVRKSM 405
           T  L  P ++ QALS    ++ SL+ S LMAWS P   LS    S+
Sbjct: 73  TSSLQIPNDKDQALSVPEGELLSLVRSLLMAWSDPLALLSSEATSL 118



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>PRL_DICLA (P48249) Prolactin precursor (PRL)|
          Length = 212

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 268 TDRL*PPLEQKQALSG*YLDVASLISSKLMAWSSPAKSLS 387
           T  L  P++++QAL     D+ SL+ S L AW  P   LS
Sbjct: 72  TSSLHTPIDKEQALQVSEADLLSLVRSLLQAWRDPLVILS 111



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>PRL2_OREMO (P09318) Prolactin-2 precursor (Prolactin II) (PRL-177)|
          Length = 200

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 268 TDRL*PPLEQKQALSG*YLDVASLISSKLMAWSSPAKSLS 387
           T  L  P +++QAL     D+ SL  S L AWS P + LS
Sbjct: 66  TSSLQTPTDKEQALQVSESDLLSLARSLLQAWSDPLEVLS 105



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>PRL1_OREMO (P09319) Prolactin-1 precursor (Prolactin I) (PRL-188)|
          Length = 212

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 268 TDRL*PPLEQKQALSG*YLDVASLISSKLMAWSSPAKSLS 387
           T  L  P+++ QAL     D+ SL  S L AWS P   LS
Sbjct: 72  TSSLQTPIDKDQALQVSESDLMSLARSLLQAWSDPLVVLS 111



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>LPS1B_LYTPI (Q03975) Calcium-binding protein LPS1-beta (Fragment)|
          Length = 243

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 21  GRRRFTRHPSFLASFLSQWSRVYASPKTRNKFGNIDKPGNATIRP 155
           GR +F     ++  +  +  R+Y+S + +  F ++DK GN  I P
Sbjct: 65  GRMQFDEFLLYMEGYTKE--RLYSSDEIKQMFDDLDKDGNGRISP 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,428,174
Number of Sequences: 219361
Number of extensions: 1109147
Number of successful extensions: 2574
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2573
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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