ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8k16 |
|---|---|
| Clone Library Name | barley_pub |
>SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase receptor| precursor (EC 2.7.11.1) (S-receptor kinase) (SRK) Length = 849 Score = 65.1 bits (157), Expect(2) = 2e-13 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 7/76 (9%) Frame = -1 Query: 474 WNLWADGKVKDFVDAAVMESYSLD-------EVSKCIHVGLLCVQDSSSARPHMSSVVSM 316 W+ W +G+ + VD +++S S EV KCI +GLLCVQ+ + RP MSSVV M Sbjct: 746 WSRWKEGRALEIVDPVIVDSLSSQPSIFQPQEVLKCIQIGLLCVQELAEHRPAMSSVVWM 805 Query: 315 LDSEATPRAAPKQPMY 268 SEAT PK P Y Sbjct: 806 FGSEATEIPQPKPPGY 821 Score = 30.0 bits (66), Expect(2) = 2e-13 Identities = 15/31 (48%), Positives = 22/31 (70%) Frame = -3 Query: 673 SDTYSFGILLLEIVSGLKISSPHHLVMDFSN 581 SD +SFG+++LEIVSG K ++L D+ N Sbjct: 711 SDVFSFGVIVLEIVSGKKNRGFYNL--DYEN 739
>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor| (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS MICROSPOROCYTES1 protein) Length = 1192 Score = 31.2 bits (69), Expect(2) = 0.009 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = -3 Query: 670 DTYSFGILLLEIVSGLKISSPHHLVMDFSNLI 575 D YSFG++LLE+V+G + + P + NL+ Sbjct: 1101 DVYSFGVILLELVTGKEPTGPDFKESEGGNLV 1132 Score = 27.3 bits (59), Expect(2) = 0.009 Identities = 11/48 (22%), Positives = 25/48 (52%) Frame = -1 Query: 456 GKVKDFVDAAVMESYSLDEVSKCIHVGLLCVQDSSSARPHMSSVVSML 313 GK D +D ++ + + + + +LC+ ++ + RP+M V+ L Sbjct: 1142 GKAVDVIDPLLVSVALKNSQLRLLQIAMLCLAETPAKRPNMLDVLKAL 1189
>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)| Length = 999 Score = 37.0 bits (84), Expect = 0.055 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = -1 Query: 405 DEVSKCIHVGLLCVQDSSSARPHMSSVVSMLD--SEATPRAAP 283 +E+SK IH+GLLC RP M VV ML S A P ++P Sbjct: 934 EEISKVIHIGLLCTSPLPLNRPSMRKVVIMLQEVSGAVPCSSP 976
>APK1A_ARATH (Q06548) Protein kinase APK1A, chloroplast precursor (EC 2.7.11.1)| Length = 410 Score = 34.7 bits (78), Expect = 0.27 Identities = 18/56 (32%), Positives = 29/56 (51%) Frame = -1 Query: 453 KVKDFVDAAVMESYSLDEVSKCIHVGLLCVQDSSSARPHMSSVVSMLDSEATPRAA 286 K+ +D + + YS++E K + L C+ RP+MS VVS L+ + AA Sbjct: 304 KIFRVIDNRLQDQYSMEEACKVATLSLRCLTTEIKLRPNMSEVVSHLEHIQSLNAA 359
>CX32_ARATH (P27450) Probable serine/threonine-protein kinase Cx32, chloroplast| precursor (EC 2.7.11.1) Length = 419 Score = 33.1 bits (74), Expect = 0.79 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = -1 Query: 453 KVKDFVDAAVMESYSLDEVSKCIHVGLLCVQDSSSARPHMSSVVSMLD 310 +VK +D + Y+ ++ + L C++ RPHM VV +L+ Sbjct: 319 RVKQIMDKGIKGQYTTKVATEMARITLSCIEPDPKNRPHMKEVVEVLE 366
>BRL3_ARATH (Q9LJF3) Serine/threonine-protein kinase BRI1-like 3 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 3) Length = 1164 Score = 32.3 bits (72), Expect = 1.3 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -3 Query: 670 DTYSFGILLLEIVSGLKISSPHHLVMDFSNLISCVSVTYR 551 D YS+G++LLE++SG K P D +NL+ YR Sbjct: 1044 DVYSYGVILLELLSGKKPIDPEEFGED-NNLVGWAKQLYR 1082
>APK1B_ARATH (P46573) Protein kinase APK1B, chloroplast precursor (EC 2.7.11.1)| Length = 412 Score = 31.6 bits (70), Expect = 2.3 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -1 Query: 438 VDAAVMESYSLDEVSKCIHVGLLCVQDSSSARPHMSSVVSMLD 310 +D + + YS++E K + L C+ RP+M+ VVS L+ Sbjct: 310 IDNRLQDQYSMEEACKVATLALRCLTFEIKLRPNMNEVVSHLE 352
>IRAK4_HUMAN (Q9NWZ3) Interleukin-1 receptor-associated kinase 4 (EC 2.7.11.1)| (IRAK-4) (NY-REN-64 antigen) Length = 460 Score = 31.6 bits (70), Expect = 2.3 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = -3 Query: 673 SDTYSFGILLLEIVSGLKISSPH 605 SD YSFG++LLEI++GL H Sbjct: 368 SDIYSFGVVLLEIITGLPAVDEH 390
>PBPB_VIBCH (Q9KUC0) Penicillin-binding protein 1B (PBP-1b) (PBP1b) (Murein| polymerase) [Includes: Penicillin-insensitive transglycosylase (EC 2.4.1.129) (Peptidoglycan glycosyltransferase) (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (EC 3. Length = 777 Score = 31.6 bits (70), Expect = 2.3 Identities = 16/58 (27%), Positives = 29/58 (50%) Frame = -1 Query: 375 LLCVQDSSSARPHMSSVVSMLDSEATPRAAPKQPMYFAQINYETSDATEDLENSANGV 202 L+ D +A + +V LD + T + A +QP YF Q++ E + D + +G+ Sbjct: 346 LMMEHDILTAPEYQQAVTRPLDVQKTAQIASRQPAYFQQVSIELKEKLGDKFKADSGL 403
>L_SENDZ (P06447) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2228 Score = 31.6 bits (70), Expect = 2.3 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = -2 Query: 155 HSLLIIKIYLYSTQCTLLKICVLLFLVGYGIEPTYVGLYCDTV 27 H+LL K Y T L+ I L L GY + P V +YCD V Sbjct: 201 HNLLECKSYTLVTYGDLVMILNKLTLTGYILTPELVLMYCDVV 243
>L_SENDF (Q06996) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2228 Score = 31.6 bits (70), Expect = 2.3 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = -2 Query: 155 HSLLIIKIYLYSTQCTLLKICVLLFLVGYGIEPTYVGLYCDTV 27 H+LL K Y T L+ I L L GY + P V +YCD V Sbjct: 201 HNLLECKSYTLVTYGDLVMILNKLTLTGYILTPELVLMYCDVV 243
>L_SENDE (P06829) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2228 Score = 31.6 bits (70), Expect = 2.3 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = -2 Query: 155 HSLLIIKIYLYSTQCTLLKICVLLFLVGYGIEPTYVGLYCDTV 27 H+LL K Y T L+ I L L GY + P V +YCD V Sbjct: 201 HNLLECKSYTLVTYGDLVMILNKLTLTGYILTPELVLMYCDVV 243
>L_SENDA (Q9DUD8) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2228 Score = 31.6 bits (70), Expect = 2.3 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = -2 Query: 155 HSLLIIKIYLYSTQCTLLKICVLLFLVGYGIEPTYVGLYCDTV 27 H+LL K Y T L+ I L L GY + P V +YCD V Sbjct: 201 HNLLECKSYTLVTYGDLVMILNKLTLTGYILTPELVLMYCDVV 243
>BRL1_ARATH (Q9ZWC8) Serine/threonine-protein kinase BRI1-like 1 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1) Length = 1166 Score = 31.6 bits (70), Expect = 2.3 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -3 Query: 670 DTYSFGILLLEIVSGLKISSPHHLVMDFSNLISCVSVTYR 551 D YS+G++LLE++SG K P D +NL+ YR Sbjct: 1046 DVYSYGVILLELLSGKKPIDPGEFGED-NNLVGWAKQLYR 1084
>CLV1_ARATH (Q9SYQ8) Receptor protein kinase CLAVATA1 precursor (EC 2.7.11.1)| Length = 980 Score = 31.2 bits (69), Expect = 3.0 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -1 Query: 423 MESYSLDEVSKCIHVGLLCVQDSSSARPHMSSVVSML 313 + Y L V + ++CV++ ++ARP M VV ML Sbjct: 931 LTGYPLTSVIHVFKIAMMCVEEEAAARPTMREVVHML 967 Score = 29.6 bits (65), Expect = 8.7 Identities = 11/18 (61%), Positives = 16/18 (88%) Frame = -3 Query: 673 SDTYSFGILLLEIVSGLK 620 SD YSFG++LLE+++G K Sbjct: 875 SDVYSFGVVLLELIAGKK 892
>IRAK3_MOUSE (Q8K4B2) Interleukin-1 receptor-associated kinase 3 (EC 2.7.11.1)| (IRAK-3) (IL-1 receptor-associated kinase M) (IRAK-M) Length = 609 Score = 30.8 bits (68), Expect = 3.9 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 10/47 (21%) Frame = -3 Query: 673 SDTYSFGILLLEIVSGLKI--SSPHHL--------VMDFSNLISCVS 563 +D YSFGI+++E+++G K+ P H+ +M+ L SC+S Sbjct: 368 TDVYSFGIVIMEVLTGCKVVLDDPKHVQLRDLLMELMEKRGLDSCLS 414
>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC| 2.7.11.1) Length = 901 Score = 30.8 bits (68), Expect = 3.9 Identities = 13/18 (72%), Positives = 16/18 (88%) Frame = -3 Query: 673 SDTYSFGILLLEIVSGLK 620 SD YSFG++LLEI+SG K Sbjct: 692 SDVYSFGVVLLEILSGRK 709
>GLND_THIDA (Q3SKP1) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 850 Score = 30.0 bits (66), Expect = 6.7 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = -1 Query: 270 YFAQINYETSDATEDLENSANGVSLTALEGR*LAHLTVPFPINY*DLLIFYAMHFIKDLR 91 +FA+I Y +A + + NG +L + + LAH I+Y D L F +DL Sbjct: 692 FFARIQYTVLEAK--IHTTRNGYALDSFQVMDLAHRN----IHYRDFLAFVEYELARDLD 745 Query: 90 PSFP 79 P+ P Sbjct: 746 PARP 749
>IRAK3_HUMAN (Q9Y616) Interleukin-1 receptor-associated kinase 3 (EC 2.7.11.1)| (IRAK-3) (IL-1 receptor-associated kinase M) (IRAK-M) Length = 596 Score = 30.0 bits (66), Expect = 6.7 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 10/47 (21%) Frame = -3 Query: 673 SDTYSFGILLLEIVSGLKI--SSPHHL--------VMDFSNLISCVS 563 +D YSFGI+++E+++G ++ P H+ +M+ L SC+S Sbjct: 355 TDVYSFGIVIMEVLTGCRVVLDDPKHIQLRDLLRELMEKRGLDSCLS 401
>MYC_MOUSE (P01108) Myc proto-oncogene protein (c-Myc) (Transcription factor| p64) Length = 439 Score = 30.0 bits (66), Expect = 6.7 Identities = 22/87 (25%), Positives = 42/87 (48%) Frame = -1 Query: 438 VDAAVMESYSLDEVSKCIHVGLLCVQDSSSARPHMSSVVSMLDSEATPRAAPKQPMYFAQ 259 +D +V+ Y L++ S C S+A S S+L SE++PRA+P+ + + Sbjct: 190 IDPSVVFPYPLNDSSS----PKSCTSSDSTAFSPSSD--SLLSSESSPRASPEPLVLHEE 243 Query: 258 INYETSDATEDLENSANGVSLTALEGR 178 TS +E+ + + + ++E R Sbjct: 244 TPPTTSSDSEEEQEDEEEIDVVSVEKR 270
>TMKL1_ARATH (P33543) Putative kinase-like protein TMKL1 precursor| Length = 674 Score = 29.6 bits (65), Expect = 8.7 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = -3 Query: 673 SDTYSFGILLLEIVSGLKISSPHHLVMDFSNLISCV 566 SD Y+FGILLLEI+ G K +F +L S V Sbjct: 557 SDVYAFGILLLEILMGKKPGKSGRNGNEFVDLPSLV 592
>LYN_MOUSE (P25911) Tyrosine-protein kinase Lyn (EC 2.7.10.2)| Length = 511 Score = 29.6 bits (65), Expect = 8.7 Identities = 19/44 (43%), Positives = 26/44 (59%) Frame = -3 Query: 673 SDTYSFGILLLEIVSGLKISSPHHLVMDFSNLISCVSVTYRVTK 542 SD +SFGILL EIV+ KI P D ++S +S YR+ + Sbjct: 423 SDVWSFGILLYEIVTYGKIPYPGRTNAD---VMSALSQGYRMPR 463
>BBS1_HUMAN (Q8NFJ9) Bardet-Biedl syndrome 1 protein (BBS2-like protein 2)| Length = 593 Score = 29.6 bits (65), Expect = 8.7 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Frame = -1 Query: 372 LCVQDSSSARPHMSSVVSMLDSEAT---PRAAPKQPMYFAQINYETSDATEDLEN 217 L +Q++S+ RP + +V L +EA PRA K P+ +NY E L N Sbjct: 503 LHLQNTSTTRPVLGLLVCFLYNEALYSLPRAFFKVPLLVPGLNYPLETFVESLSN 557
>IRAK4_MOUSE (Q8R4K2) Interleukin-1 receptor-associated kinase 4 (EC 2.7.11.1)| (IRAK-4) Length = 459 Score = 29.6 bits (65), Expect = 8.7 Identities = 11/17 (64%), Positives = 16/17 (94%) Frame = -3 Query: 673 SDTYSFGILLLEIVSGL 623 SD YSFG++LLE+++GL Sbjct: 368 SDIYSFGVVLLELITGL 384
>ALG2_KLULA (Q6CWQ0) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1.-)| (GDP-Man:Man(1)GlcNAc(2)-PP-dolichol mannosyltransferase) (Asparagine-linked glycosylation protein 2) Length = 503 Score = 29.6 bits (65), Expect = 8.7 Identities = 14/48 (29%), Positives = 27/48 (56%) Frame = -1 Query: 498 NLTTMFQAWNLWADGKVKDFVDAAVMESYSLDEVSKCIHVGLLCVQDS 355 NL ++ WNL + GK++++ + Y +D++S C+ + L DS Sbjct: 85 NLRQLYLTWNLISTGKIEEY------DVYIVDQLSSCVPLLHLNAPDS 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,966,622 Number of Sequences: 219361 Number of extensions: 1952241 Number of successful extensions: 5180 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4973 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5178 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
