ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal39n24 |
|---|---|
| Clone Library Name | barley_pub |
>NFYA5_ARATH (Q9SYH4) Nuclear transcription factor Y subunit A-5 (AtNF-YA-5)| Length = 308 Score = 53.1 bits (126), Expect = 6e-07 Identities = 22/28 (78%), Positives = 26/28 (92%) Frame = -2 Query: 499 QPYLHESRHQHAMKRARGTGGRFLNAKE 416 +PYLHESRH HA+KRARG+GGRFLN K+ Sbjct: 211 KPYLHESRHLHALKRARGSGGRFLNTKK 238
>NFYA6_ARATH (Q9LVJ7) Nuclear transcription factor Y subunit A-6 (AtNF-YA-6)| Length = 308 Score = 51.6 bits (122), Expect = 2e-06 Identities = 21/28 (75%), Positives = 25/28 (89%) Frame = -2 Query: 499 QPYLHESRHQHAMKRARGTGGRFLNAKE 416 +PYLHESRH HA+KR RG+GGRFLN K+ Sbjct: 204 KPYLHESRHLHALKRVRGSGGRFLNTKK 231
>NFYA7_ARATH (Q84JP1) Nuclear transcription factor Y subunit A-7 (AtNF-YA-7)| Length = 190 Score = 51.2 bits (121), Expect = 2e-06 Identities = 22/31 (70%), Positives = 27/31 (87%) Frame = -2 Query: 505 SVQPYLHESRHQHAMKRARGTGGRFLNAKEK 413 S +PYLHESRH HA++R RG GGRFLNAK++ Sbjct: 131 SRKPYLHESRHLHAIRRPRGCGGRFLNAKKE 161
>NFYA8_ARATH (Q9LNP6) Nuclear transcription factor Y subunit A-8 (AtNF-YA-8)| Length = 328 Score = 51.2 bits (121), Expect = 2e-06 Identities = 21/28 (75%), Positives = 25/28 (89%) Frame = -2 Query: 499 QPYLHESRHQHAMKRARGTGGRFLNAKE 416 +PYLHESRH HA+KR RG+GGRFLN K+ Sbjct: 205 KPYLHESRHVHALKRPRGSGGRFLNTKK 232
>NFYA3_ARATH (Q93ZH2) Nuclear transcription factor Y subunit A-3 (AtNF-YA-3)| (Transcriptional activator HAP2C) Length = 340 Score = 51.2 bits (121), Expect = 2e-06 Identities = 21/28 (75%), Positives = 25/28 (89%) Frame = -2 Query: 499 QPYLHESRHQHAMKRARGTGGRFLNAKE 416 +PYLHESRH HA+KR RG+GGRFLN K+ Sbjct: 212 KPYLHESRHVHALKRPRGSGGRFLNTKK 239
>HAP2_KLULA (P53768) Transcriptional activator HAP2| Length = 300 Score = 50.1 bits (118), Expect = 5e-06 Identities = 21/28 (75%), Positives = 24/28 (85%) Frame = -2 Query: 499 QPYLHESRHQHAMKRARGTGGRFLNAKE 416 +PYLHESRH+HAM+R RG GGRFL A E Sbjct: 218 RPYLHESRHKHAMRRPRGQGGRFLTAAE 245
>HAP2_YEAST (P06774) Transcriptional activator HAP2| Length = 265 Score = 50.1 bits (118), Expect = 5e-06 Identities = 21/28 (75%), Positives = 24/28 (85%) Frame = -2 Query: 499 QPYLHESRHQHAMKRARGTGGRFLNAKE 416 +PYLHESRH+HAM+R RG GGRFL A E Sbjct: 192 KPYLHESRHKHAMRRPRGEGGRFLTAAE 219
>NFYA9_ARATH (Q945M9) Nuclear transcription factor Y subunit A-9 (AtNF-YA-9)| Length = 303 Score = 50.1 bits (118), Expect = 5e-06 Identities = 29/71 (40%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = -2 Query: 505 SVQPYLHESRHQHAMKRARGTGGRF---LNAKEKXXXXXXXXXXXXXXXXXSVPADGGMF 335 S +PYLHESRHQHAM+R RGTGGRF N + S +D G Sbjct: 197 SRKPYLHESRHQHAMRRPRGTGGRFAKKTNTEASKRKAEEKSNGHVTQSPSSSNSDQGEA 256 Query: 334 SKHDHTLPSGD 302 D+ P GD Sbjct: 257 WNGDYRTPQGD 267
>NFYA4_ARATH (Q8VY64) Nuclear transcription factor Y subunit A-4 (AtNF-YA-4)| Length = 198 Score = 50.1 bits (118), Expect = 5e-06 Identities = 20/29 (68%), Positives = 26/29 (89%) Frame = -2 Query: 499 QPYLHESRHQHAMKRARGTGGRFLNAKEK 413 +PY+HESRH HA++R RG GGRFLNAK++ Sbjct: 131 KPYMHESRHLHAIRRPRGCGGRFLNAKKE 159
>HAP2_SCHPO (P24488) Transcriptional activator hap2| Length = 334 Score = 49.3 bits (116), Expect = 9e-06 Identities = 20/31 (64%), Positives = 25/31 (80%) Frame = -2 Query: 514 IHASVQPYLHESRHQHAMKRARGTGGRFLNA 422 + + +PYLHESRH+HAM+R RG GGRFL A Sbjct: 37 VQTTKKPYLHESRHKHAMRRPRGPGGRFLTA 67
>NFYAA_ARATH (Q8LFU0) Nuclear transcription factor Y subunit A-10 (AtNF-YA-10)| Length = 269 Score = 48.1 bits (113), Expect = 2e-05 Identities = 19/27 (70%), Positives = 23/27 (85%) Frame = -2 Query: 499 QPYLHESRHQHAMKRARGTGGRFLNAK 419 +PY+H SRH HAM+R RG+GGRFLN K Sbjct: 164 KPYMHHSRHLHAMRRPRGSGGRFLNTK 190
>NFYA2_ARATH (Q9M9X4) Nuclear transcription factor Y subunit A-2 (AtNF-YA-2)| (Transcriptional activator HAP2B) Length = 295 Score = 47.4 bits (111), Expect = 3e-05 Identities = 18/29 (62%), Positives = 24/29 (82%) Frame = -2 Query: 499 QPYLHESRHQHAMKRARGTGGRFLNAKEK 413 +PY+H SRH HA++R RG+GGRFLN K + Sbjct: 173 KPYMHHSRHLHALRRPRGSGGRFLNTKSQ 201
>NFYA_HUMAN (P23511) Nuclear transcription factor Y subunit alpha (Nuclear| transcription factor Y subunit A) (NF-YA) (CAAT-box DNA-binding protein subunit A) Length = 347 Score = 47.0 bits (110), Expect = 5e-05 Identities = 20/27 (74%), Positives = 22/27 (81%) Frame = -2 Query: 493 YLHESRHQHAMKRARGTGGRFLNAKEK 413 YLHESRH+HAM R RG GGRF + KEK Sbjct: 298 YLHESRHRHAMARKRGEGGRFFSPKEK 324
>NFYA_MOUSE (P23708) Nuclear transcription factor Y subunit alpha (Nuclear| transcription factor Y subunit A) (NF-YA) (CAAT-box DNA-binding protein subunit A) Length = 346 Score = 47.0 bits (110), Expect = 5e-05 Identities = 20/27 (74%), Positives = 22/27 (81%) Frame = -2 Query: 493 YLHESRHQHAMKRARGTGGRFLNAKEK 413 YLHESRH+HAM R RG GGRF + KEK Sbjct: 297 YLHESRHRHAMARKRGEGGRFFSPKEK 323
>NFYA1_ARATH (Q9LXV5) Nuclear transcription factor Y subunit A-1 (AtNF-YA-1)| (Transcriptional activator HAP2A) Length = 272 Score = 47.0 bits (110), Expect = 5e-05 Identities = 19/28 (67%), Positives = 23/28 (82%) Frame = -2 Query: 499 QPYLHESRHQHAMKRARGTGGRFLNAKE 416 +PYLHESRH+HAM+RAR +GGRF E Sbjct: 205 KPYLHESRHKHAMRRARASGGRFAKKSE 232
>NFYA_RAT (P18576) Nuclear transcription factor Y subunit alpha (Nuclear| transcription factor Y subunit A) (NF-YA) (CAAT-box DNA-binding protein subunit A) (CCAAT-binding transcription factor subunit B) (CBF-B) Length = 341 Score = 47.0 bits (110), Expect = 5e-05 Identities = 20/27 (74%), Positives = 22/27 (81%) Frame = -2 Query: 493 YLHESRHQHAMKRARGTGGRFLNAKEK 413 YLHESRH+HAM R RG GGRF + KEK Sbjct: 292 YLHESRHRHAMARKRGEGGRFFSPKEK 318
>NFYA_BOVIN (Q5E9S2) Nuclear transcription factor Y subunit alpha (Nuclear| transcription factor Y subunit A) (NF-YA) (CAAT-box DNA-binding protein subunit A) Length = 341 Score = 47.0 bits (110), Expect = 5e-05 Identities = 20/27 (74%), Positives = 22/27 (81%) Frame = -2 Query: 493 YLHESRHQHAMKRARGTGGRFLNAKEK 413 YLHESRH+HAM R RG GGRF + KEK Sbjct: 292 YLHESRHRHAMARKRGEGGRFFSPKEK 318
>NEO1_MOUSE (P97798) Neogenin precursor| Length = 1493 Score = 32.7 bits (73), Expect = 0.88 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%) Frame = +3 Query: 57 SSLAAPAVRRIYHQQRDWP-------ASSPNGTDCLPNTPSNSFNP 173 SSLA+PA +YH WP + N T+ + NTPS P Sbjct: 1299 SSLASPARSHLYHPSSPWPIGTSMSLSDRANSTESVRNTPSTDTMP 1344
>NEO1_HUMAN (Q92859) Neogenin precursor| Length = 1461 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%) Frame = +3 Query: 57 SSLAAPAVRRIYHQQRDWP-------ASSPNGTDCLPNTPSNSFNP 173 SSLA+PA +YH WP + N T+ + NTPS P Sbjct: 1268 SSLASPARSHLYHPGSPWPIGTSMSLSDRANSTESVRNTPSTDTMP 1313
>AMPT_THEAQ (P23341) Aminopeptidase T (EC 3.4.11.-) (AP-T) (Heat stable| aminopeptidase) Length = 408 Score = 32.0 bits (71), Expect = 1.5 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +1 Query: 442 LSPEPASSRADAWTHGGTAEQRHECCVMLSVSGLN-SFLQGKEIKRCSRGQR 594 L PE RA AW + G A+ HE L+VSG + L+G +R R Q+ Sbjct: 71 LVPEAHLDRAPAWLYEGMAKAFHEGAARLAVSGNDPKALEGLPPERVGRAQQ 122
>NR4A1_HUMAN (P22736) Orphan nuclear receptor NR4A1 (Orphan nuclear receptor| HMR) (Early response protein NAK1) (TR3 orphan receptor) (ST-59) Length = 598 Score = 30.8 bits (68), Expect = 3.4 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 8/68 (11%) Frame = -3 Query: 399 PAAAMHRRGLGMPAFLRTAACSRSTTTPY--------RPVTSITAREGAPRAAPLPPGKS 244 P+ A H+ G G + TA + T+P+ PVTS AR GA P G Sbjct: 211 PSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGA------PGGSE 264 Query: 243 SLAYVCGD 220 VCGD Sbjct: 265 GRCAVCGD 272
>NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch| 1) (Motch A) (mT14) (p300) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2531 Score = 30.8 bits (68), Expect = 3.4 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -1 Query: 587 PLEHLLISFPCRNEFSPDTLNITQHSCLCS 498 PL+ ++ PCRN + D L +T++ C CS Sbjct: 101 PLDKPCLANPCRNGGTCDLLTLTEYKCRCS 130
>NOTC1_HUMAN (P46531) Neurogenic locus notch homolog protein 1 precursor (Notch| 1) (hN1) (Translocation-associated notch protein TAN-1) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2556 Score = 30.8 bits (68), Expect = 3.4 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -1 Query: 587 PLEHLLISFPCRNEFSPDTLNITQHSCLC 501 PL++ ++ PCRN + D L +T++ C C Sbjct: 101 PLDNACLTNPCRNGGTCDLLTLTEYKCRC 129
>RL23A_TRYBB (P41165) 60S ribosomal protein L23a (L25)| Length = 164 Score = 30.4 bits (67), Expect = 4.4 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -3 Query: 366 MPAFLRTAACSRSTTTPYRPVTSITAREGAPRAAPLP 256 MPA +AA S+ + P V+ A++GAP AA P Sbjct: 1 MPAKAASAAASKKNSAPKSAVSKKVAKKGAPAAAAKP 37
>FAS_HUMAN (P49327) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2511 Score = 30.0 bits (66), Expect = 5.7 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%) Frame = -3 Query: 384 HRRGLGMPAFLRTAACSRSTTTPYRPVTSITAREGAPRAAPLPPGKSSLAYVC---GDRQ 214 H + L + L A +T P+R + G P +P G+ L ++C G + Sbjct: 444 HSQDLAFLSMLNDIAAVPATAMPFRGYAVLGGERGGPEVQQVPAGERPLWFICSGMGTQW 503 Query: 213 LGRMIIL**TERFVD 169 G + L +RF D Sbjct: 504 RGMGLSLMRLDRFRD 518
>NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 precursor (Notch| 1) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2531 Score = 29.6 bits (65), Expect = 7.5 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -1 Query: 587 PLEHLLISFPCRNEFSPDTLNITQHSCLC 501 PL + ++ PCRN + D L +T++ C C Sbjct: 101 PLANACLANPCRNGGTCDLLTLTEYKCRC 129
>EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (mDomino) Length = 3072 Score = 29.6 bits (65), Expect = 7.5 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = -3 Query: 399 PAAAMH--RRGLGMPAFLRTAACSRSTTTPYRPVTSITA 289 PA +H +R +G PA T S +TT R VTS+TA Sbjct: 2601 PAQVVHTQQRAVGSPATATTDLVSMTTTQGVRAVTSVTA 2639
>PHYK2_ORYSA (Q5N9J9) Probable phytol kinase 2, chloroplast precursor (EC| 2.7.-.-) (Fragment) Length = 296 Score = 29.3 bits (64), Expect = 9.8 Identities = 20/53 (37%), Positives = 25/53 (47%) Frame = -3 Query: 381 RRGLGMPAFLRTAACSRSTTTPYRPVTSITAREGAPRAAPLPPGKSSLAYVCG 223 R L PA A+CS P R V + R+G AA +PP S LA+ G Sbjct: 16 RPPLSPPAAAAAASCSFDLPRPRRLVADGSRRKGT-MAAAIPPEASGLAHDLG 67
>VL2_HPV32 (P36757) Minor capsid protein L2| Length = 476 Score = 29.3 bits (64), Expect = 9.8 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +2 Query: 20 PHKSDRKNSSSRLQLSSTCRATNLPPTERLARI 118 PH+S R+ +S QL TC+A+ P + + +I Sbjct: 3 PHRSRRRKRASATQLYQTCKASGTCPPDVIPKI 35
>NEO1_CHICK (Q90610) Neogenin (Fragment)| Length = 1443 Score = 29.3 bits (64), Expect = 9.8 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 7/45 (15%) Frame = +3 Query: 60 SLAAPAVRRIYHQQRDWPASS-------PNGTDCLPNTPSNSFNP 173 SLA+P ++HQ WP + N T+ + NTPS+ P Sbjct: 1254 SLASPTRSYLHHQVSPWPVGTSMSHSDRANSTESVRNTPSSDTMP 1298 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,237,388 Number of Sequences: 219361 Number of extensions: 1722489 Number of successful extensions: 4746 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4594 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4743 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
