ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39m16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK070411.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 5e-17
2gb|AY106113.1| Zea mays PCO152993 mRNA sequence 70 1e-08
3gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 64 7e-07
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 64 7e-07
5gb|AC162384.6| Mus musculus 10 BAC RP24-292K6 (Roswell Park Canc... 46 0.16
6ref|NM_192420.1| Oryza sativa (japonica cultivar-group), predic... 46 0.16
7gb|BT014620.1| Lycopersicon esculentum clone 134123F, mRNA sequence 46 0.16
8gb|AC155833.10| Mus musculus 10 BAC RP24-405O10 (Roswell Park Ca... 46 0.16
9dbj|AK069482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.16
10dbj|AK062263.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.16
11gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, co... 44 0.61
12gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosom... 44 0.61
13gb|AC098839.3| Genomic sequence for Mus musculus, clone RP23-469... 44 0.61
14gb|AC093505.2| Homo sapiens chromosome 5 clone CTD-2010M15, comp... 44 0.61
15dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.61
16gb|AC008604.5|AC008604 Homo sapiens chromosome 5 clone CTB-109F8... 44 0.61
17dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.61
18gb|AC159239.3| Mus musculus BAC clone RP24-496E14 from chromosom... 44 0.61
19gb|AC119269.9| Mus musculus chromosome 5, clone RP24-324B22, com... 42 2.4
20gb|AC126021.3| Mus musculus BAC clone RP24-386D8 from chromosome... 42 2.4
21gb|AC048383.25| Homo sapiens chromosome 15, clone RP11-543G18, c... 42 2.4
22gb|AC009434.19| Homo sapiens chromosome 15, clone RP11-96C21, co... 42 2.4
23emb|AL929073.19| Mouse DNA sequence from clone RP23-125D6 on chr... 42 2.4
24emb|AJ133118.1|MET133118 Medicago truncatula MtN6 gene 42 2.4
25gb|AY112245.1| Zea mays CL28489_1 mRNA sequence 42 2.4
26gb|AC149591.5| Mus musculus BAC clone RP23-332I9 from 18, comple... 42 2.4
27gb|AC154029.4| Mus musculus 6 BAC RP23-26J14 (Roswell Park Cance... 42 2.4
28gb|AC165260.2| Mus musculus BAC clone RP23-123E17 from chromosom... 40 9.6
29gb|AC114420.11| Mus musculus chromosome 5, clone RP23-375E13, co... 40 9.6
30gb|AC093366.9| Mus musculus chromosome 8, clone RP23-60P23, comp... 40 9.6
31gb|AC148008.2| Mus musculus BAC clone RP23-253C14 from chromosom... 40 9.6
32gb|AC144794.2| Mus musculus BAC clone RP24-463B6 from chromosome... 40 9.6
33gb|AY458642.1| Uncultured bacterium 560 clone EBAC750-16D01 geno... 40 9.6
34gb|AC112150.4| Mus musculus BAC clone RP24-84I17 from chromosome... 40 9.6
35gb|AC099591.7| Mus musculus chromosome 19, clone RP23-401D18, co... 40 9.6
36gb|AC122465.4| Mus musculus BAC clone RP24-304I22 from chromosom... 40 9.6
37emb|Z49068.1|CEK01C8 Caenorhabditis elegans Cosmid K01C8, comple... 40 9.6
38gb|AC122249.4| Mus musculus BAC clone RP23-164F15 from 1, comple... 40 9.6
39gb|AC098743.3| Mus musculus BAC clone RP23-122O4 from 1, complet... 40 9.6
40gb|AC079231.6| Homo sapiens BAC clone RP11-348A21 from 7, comple... 40 9.6
41emb|AL663074.13| Human DNA sequence from clone RP5-930J4 on chro... 40 9.6
42gb|AC175816.4| Mus musculus chromosome 5, clone wi1-2209C9, comp... 40 9.6
43emb|AL929460.13| Zebrafish DNA sequence from clone CH211-148J1 i... 40 9.6
44gb|AC142249.6| Mus musculus chromosome 19, clone RP23-388O22, co... 40 9.6
45emb|AL935056.18| Mouse DNA sequence from clone RP23-185F7 on chr... 40 9.6
46dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 40 9.6
47gb|AC009222.4| Homo sapiens chromosome 17, clone RP11-429O1, com... 40 9.6
48gb|AC024918.5| Homo sapiens chromosome 17, clone RP11-254J21, co... 40 9.6
49ref|NM_063348.2| Caenorhabditis elegans mammalian NucleoSTemin (... 40 9.6
50dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
51dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
52gb|AC012669.7| Homo sapiens BAC clone RP11-512G4 from 2, complet... 40 9.6
53dbj|AP004325.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
54dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
55emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 9.6
56emb|BX248090.11| Zebrafish DNA sequence from clone DKEY-156K12 i... 40 9.6
57gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 40 9.6
58emb|AL833804.16| Mouse DNA sequence from clone RP23-20A6 on chro... 40 9.6
59gb|M96662.1|MSQHSP70A Anopheles albimanus heat shock protein 70 ... 40 9.6
60gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.6
61emb|AL732647.4|CNS08C9M Oryza sativa chromosome 12, . BAC OSJNBb... 40 9.6
62emb|CT010517.11| Mouse DNA sequence from clone RP23-357P12 on ch... 40 9.6
63gb|AC068905.37| Mus musculus strain C57BL/6J chromosome 9 clone ... 40 9.6
64emb|AL138784.30| Human DNA sequence from clone RP5-1102M4 on chr... 40 9.6 
>dbj|AK070411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023053C07, full
            insert sequence
          Length = 2466

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 97/113 (85%)
 Strand = Plus / Minus

                                                                        
Query: 588  gaaaagtggtgatggctttccaggcctagagttaaattcaggatgaaattgcgtacccac 647
            ||||||||| |||||||||||||| || || || ||||||||||||||||| |  || ||
Sbjct: 1817 gaaaagtggggatggctttccaggtcttgacttgaattcaggatgaaattgtgcgccaac 1758

                                                                 
Query: 648  gaagaacttatgagctggcagctcaataatctccatgcgtctcccgctttcat 700
             || ||| |||||| ||| |||||||| |||||||||||| ||||||||||||
Sbjct: 1757 aaaaaacctatgagttggtagctcaattatctccatgcgtgtcccgctttcat 1705



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 272  cggaaacggctcgtcatgtcgctggagct 300
            |||||| ||||| ||||||||||||||||
Sbjct: 2194 cggaaatggctcttcatgtcgctggagct 2166
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>gb|AY106113.1| Zea mays PCO152993 mRNA sequence
          Length = 410

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 101/123 (82%)
 Strand = Plus / Minus

                                                                       
Query: 539 gctgaagcaagggctctagctgtccagacgacgccgcgatcagtcctaagaaaagtggtg 598
           |||||||||| || |||||||| ||||||| ||| || ||||| ||||||||||| || |
Sbjct: 148 gctgaagcaatggttctagctgcccagacgccgcggctatcagccctaagaaaagcggag 89

                                                                       
Query: 599 atggctttccaggcctagagttaaattcaggatgaaattgcgtacccacgaagaacttat 658
           ||||||| || || || || || ||||||||||| || || | ||| | ||||||||| |
Sbjct: 88  atggcttccctggtctcgacttgaattcaggatggaactgtgcaccgatgaagaacttgt 29

              
Query: 659 gag 661
           |||
Sbjct: 28  gag 26
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>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
              complete sequence
          Length = 187034

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                          
Query: 588    gaaaagtggtgatggctttccaggcctagagttaaattcaggatgaaattgcgtacccac 647
              ||||||||| |||||||||||||| || || || ||||||||||||||||| |  || ||
Sbjct: 116087 gaaaagtggggatggctttccaggtcttgacttgaattcaggatgaaattgtgcgccaac 116146

                                              
Query: 648    gaagaacttatgagctggcagctcaataatct 679
               || ||| |||||| ||| |||||||| ||||
Sbjct: 116147 aaaaaacctatgagttggtagctcaattatct 116178



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 272    cggaaacggctcgtcatgtcgctggagct 300
              |||||| ||||| ||||||||||||||||
Sbjct: 115511 cggaaatggctcttcatgtcgctggagct 115539
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                            
Query: 588      gaaaagtggtgatggctttccaggcctagagttaaattcaggatgaaattgcgtacccac 647
                ||||||||| |||||||||||||| || || || ||||||||||||||||| |  || ||
Sbjct: 28331845 gaaaagtggggatggctttccaggtcttgacttgaattcaggatgaaattgtgcgccaac 28331904

                                                
Query: 648      gaagaacttatgagctggcagctcaataatct 679
                 || ||| |||||| ||| |||||||| ||||
Sbjct: 28331905 aaaaaacctatgagttggtagctcaattatct 28331936



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 272      cggaaacggctcgtcatgtcgctggagct 300
                |||||| ||||| ||||||||||||||||
Sbjct: 28331269 cggaaatggctcttcatgtcgctggagct 28331297
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>gb|AC162384.6| Mus musculus 10 BAC RP24-292K6 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 172853

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 169   aatgaaacaaacgaacaagcaagcaag 195
             |||||||||||| ||||||||||||||
Sbjct: 18621 aatgaaacaaacaaacaagcaagcaag 18595
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>ref|NM_192420.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1770

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 582  tcctaagaaaagtggtgatggctttccaggcctagagttaaattcaggatg 632
            ||||||||||||||| |||||||| || || || || || |||||||||||
Sbjct: 1593 tcctaagaaaagtggagatggcttccctggtcttgacttgaattcaggatg 1543



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 670  tcaataatctccatgcgtct 689
            ||||||||||||||||||||
Sbjct: 1505 tcaataatctccatgcgtct 1486
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>gb|BT014620.1| Lycopersicon esculentum clone 134123F, mRNA sequence
          Length = 1912

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 604  tttccaggcctagagttaaattcaggatgaaattg 638
            ||||| ||||| || ||||||||||||||||||||
Sbjct: 1771 tttcctggccttgatttaaattcaggatgaaattg 1737
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>gb|AC155833.10| Mus musculus 10 BAC RP24-405O10 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 176338

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 169   aatgaaacaaacgaacaagcaagcaag 195
             |||||||||||| ||||||||||||||
Sbjct: 65173 aatgaaacaaacaaacaagcaagcaag 65199
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>dbj|AK069482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020O19, full
            insert sequence
          Length = 2451

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 582  tcctaagaaaagtggtgatggctttccaggcctagagttaaattcaggatg 632
            ||||||||||||||| |||||||| || || || || || |||||||||||
Sbjct: 1820 tcctaagaaaagtggagatggcttccctggtcttgacttgaattcaggatg 1770



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 670  tcaataatctccatgcgtct 689
            ||||||||||||||||||||
Sbjct: 1732 tcaataatctccatgcgtct 1713
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>dbj|AK062263.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-H06, full
           insert sequence
          Length = 1288

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 582 tcctaagaaaagtggtgatggctttccaggcctagagttaaattcaggatg 632
           ||||||||||||||| |||||||| || || || || || |||||||||||
Sbjct: 725 tcctaagaaaagtggagatggcttccctggtcttgacttgaattcaggatg 675



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 670 tcaataatctccatgcgtct 689
           ||||||||||||||||||||
Sbjct: 637 tcaataatctccatgcgtct 618
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>gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, complete sequence
          Length = 188921

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 174   aacaaacgaacaagcaagcaag 195
             ||||||||||||||||||||||
Sbjct: 14382 aacaaacgaacaagcaagcaag 14403
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>gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosome 10, complete sequence
          Length = 198030

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 174    aacaaacgaacaagcaagcaag 195
              ||||||||||||||||||||||
Sbjct: 127203 aacaaacgaacaagcaagcaag 127224
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>gb|AC098839.3| Genomic sequence for Mus musculus, clone RP23-469C2, complete
            sequence
          Length = 192470

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 169  aatgaaacaaacgaacaagcaagcaa 194
            |||||||||||| |||||||||||||
Sbjct: 7778 aatgaaacaaacaaacaagcaagcaa 7753
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>gb|AC093505.2| Homo sapiens chromosome 5 clone CTD-2010M15, complete sequence
          Length = 131489

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 173    aaacaaacgaacaagcaagcaa 194
              ||||||||||||||||||||||
Sbjct: 110540 aaacaaacgaacaagcaagcaa 110561
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                  
Query: 583      cctaagaaaagtggtgatggctttccaggcctagagttaaattcaggatg 632
                |||||||||||||| |||||||| || || || || || |||||||||||
Sbjct: 26513953 cctaagaaaagtggagatggcttccctggtcttgacttgaattcaggatg 26513904
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>gb|AC008604.5|AC008604 Homo sapiens chromosome 5 clone CTB-109F8, complete sequence
          Length = 108976

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 173   aaacaaacgaacaagcaagcaa 194
             ||||||||||||||||||||||
Sbjct: 39444 aaacaaacgaacaagcaagcaa 39423
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>dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0006H05
          Length = 154821

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                
Query: 583    cctaagaaaagtggtgatggctttccaggcctagagttaaattcaggatg 632
              |||||||||||||| |||||||| || || || || || |||||||||||
Sbjct: 122572 cctaagaaaagtggagatggcttccctggtcttgacttgaattcaggatg 122523
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>gb|AC159239.3| Mus musculus BAC clone RP24-496E14 from chromosome 13, complete
             sequence
          Length = 206286

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 169   aatgaaacaaacgaacaagcaagcaa 194
             |||||||||||| |||||||||||||
Sbjct: 60085 aatgaaacaaacaaacaagcaagcaa 60110
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>gb|AC119269.9| Mus musculus chromosome 5, clone RP24-324B22, complete sequence
          Length = 172282

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 173    aaacaaacgaacaagcaagcaagac 197
              |||||||| ||||||||||||||||
Sbjct: 104636 aaacaaacaaacaagcaagcaagac 104612
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>gb|AC126021.3| Mus musculus BAC clone RP24-386D8 from chromosome 18, complete sequence
          Length = 137484

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 144   ttacaaccttgataataaaatcctt 168
             |||||||||||| ||||||||||||
Sbjct: 32801 ttacaaccttgaaaataaaatcctt 32825
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>gb|AC048383.25| Homo sapiens chromosome 15, clone RP11-543G18, complete sequence
          Length = 192235

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 606   tccaggcctagagttaaattc 626
             |||||||||||||||||||||
Sbjct: 49553 tccaggcctagagttaaattc 49533
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>gb|AC009434.19| Homo sapiens chromosome 15, clone RP11-96C21, complete sequence
          Length = 177207

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 606  tccaggcctagagttaaattc 626
            |||||||||||||||||||||
Sbjct: 6632 tccaggcctagagttaaattc 6652
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>emb|AL929073.19| Mouse DNA sequence from clone RP23-125D6 on chromosome 4, complete
             sequence
          Length = 129246

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 171   tgaaacaaacgaacaagcaagcaag 195
             |||||||||| ||||||||||||||
Sbjct: 76608 tgaaacaaacaaacaagcaagcaag 76632
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>emb|AJ133118.1|MET133118 Medicago truncatula MtN6 gene
          Length = 4162

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 620 taaattcaggatgaaattgcg 640
           |||||||||||||||||||||
Sbjct: 131 taaattcaggatgaaattgcg 151
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>gb|AY112245.1| Zea mays CL28489_1 mRNA sequence
          Length = 610

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/40 (90%), Gaps = 2/40 (5%)
 Strand = Plus / Plus

                                                   
Query: 96  ggcgagacggcaggcttgaaactgaagctagctgcacatc 135
           ||||||||||||||||  | |||| |||||||||||||||
Sbjct: 110 ggcgagacggcaggct--acactggagctagctgcacatc 147
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>gb|AC149591.5| Mus musculus BAC clone RP23-332I9 from 18, complete sequence
          Length = 231381

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 144   ttacaaccttgataataaaatcctt 168
             |||||||||||| ||||||||||||
Sbjct: 95774 ttacaaccttgaaaataaaatcctt 95750
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>gb|AC154029.4| Mus musculus 6 BAC RP23-26J14 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 188537

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 143   tttacaaccttgataataaaa 163
             |||||||||||||||||||||
Sbjct: 96011 tttacaaccttgataataaaa 95991
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>gb|AC165260.2| Mus musculus BAC clone RP23-123E17 from chromosome 13, complete
             sequence
          Length = 209914

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   tgacatctcttcttccttga 319
             ||||||||||||||||||||
Sbjct: 54324 tgacatctcttcttccttga 54343
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>gb|AC114420.11| Mus musculus chromosome 5, clone RP23-375E13, complete sequence
          Length = 155958

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     cccaatactactacagcagc 40
              ||||||||||||||||||||
Sbjct: 151031 cccaatactactacagcagc 151012
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>gb|AC093366.9| Mus musculus chromosome 8, clone RP23-60P23, complete sequence
          Length = 230236

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 173    aaacaaacgaacaagcaagcaaga 196
              |||||||| |||||||||||||||
Sbjct: 159417 aaacaaacaaacaagcaagcaaga 159394
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>gb|AC148008.2| Mus musculus BAC clone RP23-253C14 from chromosome 18, complete
             sequence
          Length = 161965

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   aaacaaacgaacaagcaagcaaga 196
             |||||||| |||||||||||||||
Sbjct: 40075 aaacaaacaaacaagcaagcaaga 40098
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>gb|AC144794.2| Mus musculus BAC clone RP24-463B6 from chromosome 18, complete sequence
          Length = 152588

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 173    aaacaaacgaacaagcaagcaaga 196
              |||||||| |||||||||||||||
Sbjct: 117812 aaacaaacaaacaagcaagcaaga 117835
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>gb|AY458642.1| Uncultured bacterium 560 clone EBAC750-16D01 genomic sequence
          Length = 73480

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   ttgataataaaatccttaat 171
             ||||||||||||||||||||
Sbjct: 23104 ttgataataaaatccttaat 23085
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>gb|AC112150.4| Mus musculus BAC clone RP24-84I17 from chromosome 16, complete sequence
          Length = 211640

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   acatctcttcttccttgatc 321
             ||||||||||||||||||||
Sbjct: 44396 acatctcttcttccttgatc 44415
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>gb|AC099591.7| Mus musculus chromosome 19, clone RP23-401D18, complete sequence
          Length = 191578

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 172    gaaacaaacgaacaagcaagcaag 195
              ||||||||| ||||||||||||||
Sbjct: 186286 gaaacaaacaaacaagcaagcaag 186309
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>gb|AC122465.4| Mus musculus BAC clone RP24-304I22 from chromosome 13, complete
             sequence
          Length = 142340

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 171   tgaaacaaacgaacaagcaagcaa 194
             |||||||||| |||||||||||||
Sbjct: 46003 tgaaacaaacaaacaagcaagcaa 46026
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>emb|Z49068.1|CEK01C8 Caenorhabditis elegans Cosmid K01C8, complete sequence
          Length = 24725

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 416   agatgtgaatgctgctgcca 435
             ||||||||||||||||||||
Sbjct: 20626 agatgtgaatgctgctgcca 20607
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>gb|AC122249.4| Mus musculus BAC clone RP23-164F15 from 1, complete sequence
          Length = 207471

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   gcttgaaactgaagctagct 128
             ||||||||||||||||||||
Sbjct: 49453 gcttgaaactgaagctagct 49472
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>gb|AC098743.3| Mus musculus BAC clone RP23-122O4 from 1, complete sequence
          Length = 225868

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    gcttgaaactgaagctagct 128
              ||||||||||||||||||||
Sbjct: 168503 gcttgaaactgaagctagct 168522
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>gb|AC079231.6| Homo sapiens BAC clone RP11-348A21 from 7, complete sequence
          Length = 87047

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   taataaaatccttaatgaaa 175
             ||||||||||||||||||||
Sbjct: 29167 taataaaatccttaatgaaa 29186
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>emb|AL663074.13| Human DNA sequence from clone RP5-930J4 on chromosome 1 Contains the 5'
             end of the KIF17 gene for kinesin family member 17, three
             novel genes, the 3' end of gene HP1-BP74 and two CpG
             islands, complete sequence
          Length = 85781

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 536   taggctgaagcaagggctct 555
             ||||||||||||||||||||
Sbjct: 62500 taggctgaagcaagggctct 62519
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>gb|AC175816.4| Mus musculus chromosome 5, clone wi1-2209C9, complete sequence
          Length = 38620

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    cccaatactactacagcagc 40
             ||||||||||||||||||||
Sbjct: 29636 cccaatactactacagcagc 29655
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>emb|AL929460.13| Zebrafish DNA sequence from clone CH211-148J1 in linkage group 9,
              complete sequence
          Length = 161013

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 171    tgaaacaaacgaacaagcaagcaa 194
              ||||| ||||||||||||||||||
Sbjct: 133402 tgaaaaaaacgaacaagcaagcaa 133425
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>gb|AC142249.6| Mus musculus chromosome 19, clone RP23-388O22, complete sequence
          Length = 201321

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 172    gaaacaaacgaacaagcaagcaag 195
              ||||||||| ||||||||||||||
Sbjct: 189688 gaaacaaacaaacaagcaagcaag 189665
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>emb|AL935056.18| Mouse DNA sequence from clone RP23-185F7 on chromosome 2, complete
             sequence
          Length = 146086

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 160   aaaatccttaatgaaacaaacgaa 183
             ||||||||| ||||||||||||||
Sbjct: 52590 aaaatcctttatgaaacaaacgaa 52567
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>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    aaccggaaacggctcgtcat 288
              ||||||||||||||||||||
Sbjct: 719636 aaccggaaacggctcgtcat 719617
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>gb|AC009222.4| Homo sapiens chromosome 17, clone RP11-429O1, complete sequence
          Length = 184304

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   atgtgaatgctgctgccatt 437
             ||||||||||||||||||||
Sbjct: 83544 atgtgaatgctgctgccatt 83525
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>gb|AC024918.5| Homo sapiens chromosome 17, clone RP11-254J21, complete sequence
          Length = 172784

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 418    atgtgaatgctgctgccatt 437
              ||||||||||||||||||||
Sbjct: 160507 atgtgaatgctgctgccatt 160488
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>ref|NM_063348.2| Caenorhabditis elegans mammalian NucleoSTemin (stem cell marker)
            related family member (nst-1) (nst-1) mRNA, complete cds
          Length = 2118

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 416  agatgtgaatgctgctgcca 435
            ||||||||||||||||||||
Sbjct: 1187 agatgtgaatgctgctgcca 1206
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 406      ccgtgctgctagatgtgaat 425
                ||||||||||||||||||||
Sbjct: 21867175 ccgtgctgctagatgtgaat 21867194
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 406      ccgtgctgctagatgtgaat 425
                ||||||||||||||||||||
Sbjct: 12829308 ccgtgctgctagatgtgaat 12829289
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>gb|AC012669.7| Homo sapiens BAC clone RP11-512G4 from 2, complete sequence
          Length = 140602

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   gcaagcaagactagagcagc 206
             ||||||||||||||||||||
Sbjct: 85333 gcaagcaagactagagcagc 85314
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>dbj|AP004325.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OJ1230_H04
          Length = 123818

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 406  ccgtgctgctagatgtgaat 425
            ||||||||||||||||||||
Sbjct: 1795 ccgtgctgctagatgtgaat 1776
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>dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0019A05
          Length = 144255

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 406    ccgtgctgctagatgtgaat 425
              ||||||||||||||||||||
Sbjct: 130085 ccgtgctgctagatgtgaat 130066
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 305    tctcttcttccttgatcaga 324
              ||||||||||||||||||||
Sbjct: 812848 tctcttcttccttgatcaga 812829
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>emb|BX248090.11| Zebrafish DNA sequence from clone DKEY-156K12 in linkage group 20,
             complete sequence
          Length = 212314

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 402   gctgccgtgctgctagatgtgaat 425
             |||||||||||||||||| |||||
Sbjct: 61249 gctgccgtgctgctagatatgaat 61226
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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 419     tgtgaatgctgctgccattc 438
               ||||||||||||||||||||
Sbjct: 2867113 tgtgaatgctgctgccattc 2867094
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>emb|AL833804.16| Mouse DNA sequence from clone RP23-20A6 on chromosome 2, complete
              sequence
          Length = 200521

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 173    aaacaaacgaacaagcaagcaaga 196
              |||||||| |||||||||||||||
Sbjct: 197296 aaacaaacaaacaagcaagcaaga 197273
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>gb|M96662.1|MSQHSP70A Anopheles albimanus heat shock protein 70 (hsp70) gene (clone p70a),
            complete cds
          Length = 5017

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 173  aaacaaacgaacaagcaagcaaga 196
            |||||| |||||||||||||||||
Sbjct: 2816 aaacaagcgaacaagcaagcaaga 2839



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 173  aaacaaacgaacaagcaagcaaga 196
            |||||| |||||||||||||||||
Sbjct: 2279 aaacaagcgaacaagcaagcaaga 2256
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 406      ccgtgctgctagatgtgaat 425
                ||||||||||||||||||||
Sbjct: 21795520 ccgtgctgctagatgtgaat 21795539
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>emb|AL732647.4|CNS08C9M Oryza sativa chromosome 12, . BAC OSJNBb0087J18 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 121592

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   ccgtgctgctagatgtgaat 425
             ||||||||||||||||||||
Sbjct: 56157 ccgtgctgctagatgtgaat 56138
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>emb|CT010517.11| Mouse DNA sequence from clone RP23-357P12 on chromosome 16, complete
              sequence
          Length = 188228

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    acatctcttcttccttgatc 321
              ||||||||||||||||||||
Sbjct: 113839 acatctcttcttccttgatc 113820
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>gb|AC068905.37| Mus musculus strain C57BL/6J chromosome 9 clone rp23-222i2, complete
             sequence
          Length = 185413

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 172   gaaacaaacgaacaagcaagcaag 195
             ||||||||| ||||||||||||||
Sbjct: 45052 gaaacaaacaaacaagcaagcaag 45029
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>emb|AL138784.30| Human DNA sequence from clone RP5-1102M4 on chromosome 1, complete
             sequence
          Length = 150434

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 536   taggctgaagcaagggctct 555
             ||||||||||||||||||||
Sbjct: 85572 taggctgaagcaagggctct 85591


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,153,645
Number of Sequences: 3902068
Number of extensions: 5153645
Number of successful extensions: 97083
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 96726
Number of HSP's gapped (non-prelim): 357
length of query: 700
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 677
effective length of database: 17,143,297,704
effective search space: 11606012545608
effective search space used: 11606012545608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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