ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39l19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome... 121 2e-24
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 121 2e-24
4dbj|AK072911.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
5emb|Z71265.1|CEM05B5 Caenorhabditis elegans Cosmid M05B5, comple... 46 0.084
6emb|AL353649.12| Human DNA sequence from clone RP11-30P16 on chr... 44 0.33
7gb|AC006035.2| Homo sapiens BAC clone RP11-196O16 from 7, comple... 42 1.3
8ref|XM_625855.1| Cryptosporidium parvum Iowa II hypothetical pro... 42 1.3
9gb|AC116387.7| Mus musculus chromosome 18, clone RP23-37P9, comp... 40 5.2
10emb|CT025361.2| Xenopus tropicalis finished cDNA, clone TNeu099b15 40 5.2
11gb|AC122317.4| Mus musculus BAC clone RP23-304C21 from 12, compl... 40 5.2
12gb|AC113974.9| Mus musculus chromosome 18, clone RP23-140D3, com... 40 5.2
13gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, c... 40 5.2
14gb|AC147959.18| Medicago truncatula clone mth2-11c16, complete s... 40 5.2
15gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.2
16gb|AC129933.13| Mus musculus chromosome 1, clone RP23-234P14, co... 40 5.2
17gb|AC022379.2|AC022379 Homo sapiens chromosome 3 clone 996C6 map... 40 5.2
18gb|AC023471.4|AC023471 Homo sapiens chromosome 3 clone RP11-126L... 40 5.2
19gb|AC024910.5| Homo sapiens chromosome 3 clone RP11-380A22 map 3... 40 5.2
20dbj|AP007297.1| Lotus japonicus genomic DNA, clone:LjT02G13, TM0... 40 5.2
21dbj|AP006378.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.2
22dbj|AP006074.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 5.2
23dbj|AP004958.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 5.2
24gb|AC027128.5| Homo sapiens chromosome 3 clone RP11-627C1 map 3p... 40 5.2 
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078F08, complete sequence
          Length = 165440

 Score =  121 bits (61), Expect = 2e-24
 Identities = 109/125 (87%)
 Strand = Plus / Minus

                                                                         
Query: 262   atcactggtttccgtacttgggtccatcaagacccctcttgtcatcccaccctctcaccc 321
             ||||||| ||||| ||||| ||||| ||||  || | |||||||||||||||||||||||
Sbjct: 88079 atcactgatttccatactttggtccttcaatgcctcgcttgtcatcccaccctctcaccc 88020

                                                                         
Query: 322   aaggctgaccaggcgctgaccgggtctctggggaagagtgcttgctcaggttatccgtca 381
             | ||||||||||| ||||| | |||||| || |||||||||||||||||||| ||||| |
Sbjct: 88019 atggctgaccaggtgctgatctggtctcaggagaagagtgcttgctcaggttgtccgtga 87960

                  
Query: 382   ccttc 386
             |||||
Sbjct: 87959 ccttc 87955
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  121 bits (61), Expect = 2e-24
 Identities = 109/125 (87%)
 Strand = Plus / Minus

                                                                            
Query: 262      atcactggtttccgtacttgggtccatcaagacccctcttgtcatcccaccctctcaccc 321
                ||||||| ||||| ||||| ||||| ||||  || | |||||||||||||||||||||||
Sbjct: 18508764 atcactgatttccatactttggtccttcaatgcctcgcttgtcatcccaccctctcaccc 18508705

                                                                            
Query: 322      aaggctgaccaggcgctgaccgggtctctggggaagagtgcttgctcaggttatccgtca 381
                | ||||||||||| ||||| | |||||| || |||||||||||||||||||| ||||| |
Sbjct: 18508704 atggctgaccaggtgctgatctggtctcaggagaagagtgcttgctcaggttgtccgtga 18508645

                     
Query: 382      ccttc 386
                |||||
Sbjct: 18508644 ccttc 18508640
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  121 bits (61), Expect = 2e-24
 Identities = 109/125 (87%)
 Strand = Plus / Minus

                                                                            
Query: 262      atcactggtttccgtacttgggtccatcaagacccctcttgtcatcccaccctctcaccc 321
                ||||||| ||||| ||||| ||||| ||||  || | |||||||||||||||||||||||
Sbjct: 18668165 atcactgatttccatactttggtccttcaatgcctcgcttgtcatcccaccctctcaccc 18668106

                                                                            
Query: 322      aaggctgaccaggcgctgaccgggtctctggggaagagtgcttgctcaggttatccgtca 381
                | ||||||||||| ||||| | |||||| || |||||||||||||||||||| ||||| |
Sbjct: 18668105 atggctgaccaggtgctgatctggtctcaggagaagagtgcttgctcaggttgtccgtga 18668046

                     
Query: 382      ccttc 386
                |||||
Sbjct: 18668045 ccttc 18668041
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>dbj|AK072911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150D09, full
           insert sequence
          Length = 835

 Score =  105 bits (53), Expect = 1e-19
 Identities = 107/125 (85%)
 Strand = Plus / Minus

                                                                       
Query: 262 atcactggtttccgtacttgggtccatcaagacccctcttgtcatcccaccctctcaccc 321
           ||||||| ||||| ||||| || || ||||  || | |||||||||||||||||||||||
Sbjct: 612 atcactgatttccatactttggcccttcaatgcctcgcttgtcatcccaccctctcaccc 553

                                                                       
Query: 322 aaggctgaccaggcgctgaccgggtctctggggaagagtgcttgctcaggttatccgtca 381
           | ||||||||||| ||||| | |||| | || |||||||||||||||||||| ||||| |
Sbjct: 552 atggctgaccaggtgctgatctggtcccaggagaagagtgcttgctcaggttgtccgtga 493

                
Query: 382 ccttc 386
           |||||
Sbjct: 492 ccttc 488
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>emb|Z71265.1|CEM05B5 Caenorhabditis elegans Cosmid M05B5, complete sequence
          Length = 19144

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 94  catttccctcaacgggaacaagtgaaacctt 124
           ||||||||| ||| |||||||||||||||||
Sbjct: 419 catttcccttaactggaacaagtgaaacctt 389
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>emb|AL353649.12| Human DNA sequence from clone RP11-30P16 on chromosome 9, complete
             sequence
          Length = 64791

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 225   ttatttttaagactgcaataatggtt 250
             |||||| |||||||||||||||||||
Sbjct: 24043 ttatttctaagactgcaataatggtt 24018
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>gb|AC006035.2| Homo sapiens BAC clone RP11-196O16 from 7, complete sequence
          Length = 182372

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 183    gctttatttacacaagcatta 203
              |||||||||||||||||||||
Sbjct: 151673 gctttatttacacaagcatta 151693
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>ref|XM_625855.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd4_2690),
            partial mRNA
          Length = 5403

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 34   acataaactcagatctagaaa 54
            |||||||||||||||||||||
Sbjct: 3916 acataaactcagatctagaaa 3896
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>gb|AC116387.7| Mus musculus chromosome 18, clone RP23-37P9, complete sequence
          Length = 217116

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    aagactgcaataatggtttc 252
              ||||||||||||||||||||
Sbjct: 112143 aagactgcaataatggtttc 112124
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>emb|CT025361.2| Xenopus tropicalis finished cDNA, clone TNeu099b15
          Length = 3245

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  catggagcatcactaaccat 177
            ||||||||||||||||||||
Sbjct: 2758 catggagcatcactaaccat 2777
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>gb|AC122317.4| Mus musculus BAC clone RP23-304C21 from 12, complete sequence
          Length = 173567

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   tctggggaagagtgcttgct 367
             ||||||||||||||||||||
Sbjct: 61386 tctggggaagagtgcttgct 61405
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>gb|AC113974.9| Mus musculus chromosome 18, clone RP23-140D3, complete sequence
          Length = 270111

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   aagactgcaataatggtttc 252
             ||||||||||||||||||||
Sbjct: 51531 aagactgcaataatggtttc 51550
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>gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, complete sequence
          Length = 194334

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   catcccaccctctcacccaa 323
             ||||||||||||||||||||
Sbjct: 75733 catcccaccctctcacccaa 75714
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>gb|AC147959.18| Medicago truncatula clone mth2-11c16, complete sequence
          Length = 132878

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ttgtacatacataaactcag 45
             ||||||||||||||||||||
Sbjct: 50793 ttgtacatacataaactcag 50812
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 324     ggctgaccaggcgctgaccg 343
               ||||||||||||||||||||
Sbjct: 3200420 ggctgaccaggcgctgaccg 3200401
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>gb|AC129933.13| Mus musculus chromosome 1, clone RP23-234P14, complete sequence
          Length = 247595

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 225    ttatttttaagactgcaataatgg 248
              |||||||||||| |||||||||||
Sbjct: 106765 ttatttttaagaatgcaataatgg 106788
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>gb|AC022379.2|AC022379 Homo sapiens chromosome 3 clone 996C6 map 3p, complete sequence
          Length = 222542

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 310    accctctcacccaaggctgaccag 333
              |||||||| |||||||||||||||
Sbjct: 184899 accctctctcccaaggctgaccag 184922
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>gb|AC023471.4|AC023471 Homo sapiens chromosome 3 clone RP11-126L9 map 3p, complete sequence
          Length = 192973

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 310   accctctcacccaaggctgaccag 333
             |||||||| |||||||||||||||
Sbjct: 50437 accctctctcccaaggctgaccag 50460
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>gb|AC024910.5| Homo sapiens chromosome 3 clone RP11-380A22 map 3p, complete sequence
          Length = 207606

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 310    accctctcacccaaggctgaccag 333
              |||||||| |||||||||||||||
Sbjct: 206884 accctctctcccaaggctgaccag 206907
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>dbj|AP007297.1| Lotus japonicus genomic DNA, clone:LjT02G13, TM0489a, complete sequence
          Length = 72531

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 295   ccctcttgtcatcccaccctctca 318
             |||||| |||||||||||||||||
Sbjct: 30140 ccctctcgtcatcccaccctctca 30163
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>dbj|AP006378.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT44A10, TM0223,
             complete sequence
          Length = 101752

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 295   ccctcttgtcatcccaccctctca 318
             |||||| |||||||||||||||||
Sbjct: 99410 ccctctcgtcatcccaccctctca 99387
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>dbj|AP006074.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT40O02, TM0111b,
           complete sequence
          Length = 92724

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 295 ccctcttgtcatcccaccctctca 318
           |||||| |||||||||||||||||
Sbjct: 42  ccctctcgtcatcccaccctctca 65
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>dbj|AP004958.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT20B10, TM0135,
            complete sequence
          Length = 96988

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 295  ccctcttgtcatcccaccctctca 318
            |||||| |||||||||||||||||
Sbjct: 3472 ccctctcgtcatcccaccctctca 3449
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>gb|AC027128.5| Homo sapiens chromosome 3 clone RP11-627C1 map 3p, complete sequence
          Length = 175773

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 310    accctctcacccaaggctgaccag 333
              |||||||| |||||||||||||||
Sbjct: 103139 accctctctcccaaggctgaccag 103116


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,673,968
Number of Sequences: 3902068
Number of extensions: 3673968
Number of successful extensions: 68325
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68229
Number of HSP's gapped (non-prelim): 96
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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