ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal39l06 |
|---|---|
| Clone Library Name | barley_pub |
>FAT2_DROME (Q9VW71) Putative fat-like cadherin-related tumor suppressor| homolog precursor Length = 4705 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%) Frame = +1 Query: 37 SSKKYLPLTPTDVN-YCPVV--VAATPRLIDRSSLGTYVQCLN 156 S+ K LP+T DVN PV+ AT RL + + +GT V CL+ Sbjct: 855 STSKMLPITILDVNDNRPVIQKTLATFRLTESARIGTVVHCLH 897
>PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) Length = 1692 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Frame = -3 Query: 341 PHTGRLSMPNPALPQPIDGLVITGSEVPR---PSCSPVLLR 228 PH+G L P+P P P L + PR P +PV +R Sbjct: 1086 PHSGALPFPSPGPPHPHPTLAYGPAPSPRPLGPQATPVSIR 1126
>FLII_BACSU (P23445) Flagellum-specific ATP synthase (EC 3.6.3.14)| Length = 440 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Frame = +1 Query: 64 PTDVNYCPVVVAATPRLIDRSSL---GTYVQCLN*LHDGLEWNDP 189 PT Y P V A PRL++R+ GT L DG + N+P Sbjct: 277 PTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVDGDDMNEP 321
>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) (Fragment) Length = 1499 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Frame = -3 Query: 341 PHTGRLSMPNPALPQPIDGLVITGSEVPR---PSCSPVLLR 228 PH+G L P+P P P L + PR P +PV +R Sbjct: 893 PHSGALPFPSPGPPHPHPTLAYGPAPSPRPLGPQATPVSIR 933
>YL688_MIMIV (Q5UNV2) Hypothetical protein L688| Length = 236 Score = 28.5 bits (62), Expect = 4.0 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Frame = -3 Query: 314 NPALPQPIDGLVITGSEVPRPSCSPVLLRCAVLLHVYI*V--PLGSFHSSPSCN*LRHCT 141 +P LP P + + + S P PS P+ + C V + YI + SSP+ L T Sbjct: 42 SPCLPYPTNCVQVCTSSQPCPSPCPIPVPCPVTIVEYITTAPTATTIESSPTGMAL---T 98 Query: 140 YVPKELRSINLGVAATTTGQ*FTSV 66 +P SI G TG T V Sbjct: 99 PIPVGSTSIPSGTVTVITGYAATPV 123
>CRX_CANFA (Q8SQ03) Cone-rod homeobox protein| Length = 299 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 94 VAATPRLIDRSSLGTYVQCLN*LHDGLEWNDPNGTYMYTWS 216 +A +P + S GTY D LE+ DP GT+ +T++ Sbjct: 246 LAQSPTSLSGQSYGTYSPV-----DSLEFKDPTGTWKFTYN 281
>NARH_SHIFL (Q83RN5) Respiratory nitrate reductase 1 beta chain (EC 1.7.99.4)| Length = 512 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +2 Query: 209 HGAAQRSAGAPVNRMAEAPRFLLSPGHRLAEVERGWAWTDGL 334 H A + S P+ R PR L++ G R+A++E+G W D L Sbjct: 112 HTAPEGSKSQPIAR----PRSLIT-GERMAKIEKGPNWEDDL 148
>NARH_ECOLI (P11349) Respiratory nitrate reductase 1 beta chain (EC 1.7.99.4)| (Nitrate reductase A beta subunit) (Quinol-nitrate oxidoreductase beta subunit) Length = 512 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +2 Query: 209 HGAAQRSAGAPVNRMAEAPRFLLSPGHRLAEVERGWAWTDGL 334 H A + S P+ R PR L++ G R+A++E+G W D L Sbjct: 112 HTAPEGSKSQPIAR----PRSLIT-GERMAKIEKGPNWEDDL 148
>RAD5_CRYNE (Q5KPG8) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1198 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/51 (37%), Positives = 27/51 (52%) Frame = +1 Query: 169 GLEWNDPNGTYMYTWSSTAQRRSTGEQDGRGTSLPVITRPSIG*GRAGLGM 321 G+ W +GT S AQR +T E+ GR T+ P+I S+ G GL + Sbjct: 1059 GIRWLRFDGTM-----SQAQRANTIEEFGRKTNEPLILLISLKAGGVGLNL 1104
>MBN_DROME (P52302) Protein lethal(3)malignant blood neoplasm 1 (Mbn(83))| Length = 653 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Frame = -2 Query: 396 PQDQQLAQRDVSPSM*GVTTHRPS--VHAQPRSTSANRWPGDNRKRGASAILFTGAPALR 223 P L +P + GVT + P+ V + +A + PG+ + G+ I+ GAP R Sbjct: 396 PHQTPLLSSATAPGISGVTANTPTGNVPSNGGGIAAGKAPGNPQAGGSGGIIGAGAPGGR 455
>YEJO_ECOLI (P33924) Hypothetical outer membrane protein yejO| Length = 863 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +2 Query: 296 AEVERGWAWTDGLCVVTPYI 355 A VE G+ W DGL V PY+ Sbjct: 719 AHVESGFRWVDGLWSVRPYL 738
>CERU_RAT (P13635) Ceruloplasmin precursor (EC 1.16.3.1) (Ferroxidase)| Length = 1059 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 95 TTTGQ*FTSVGVRGRYFFEEEFCKING 15 T TG+ FTS+G R FFE+ +I G Sbjct: 391 TFTGENFTSLGSDSRVFFEQGATRIGG 417
>HUTU_CAEEL (Q9NAE2) Probable urocanate hydratase (EC 4.2.1.49) (Urocanase)| (Imidazolonepropionate hydrolase) Length = 731 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Frame = +1 Query: 172 LEWNDPNGTYMYTWSSTAQ-----RRSTGEQDGRGTSLPV 276 L W+ PNG +WS A+ +R+ + DG +LPV Sbjct: 680 LNWDVPNGVTRRSWSGNAKAQEAIQRAEKQVDGLRVTLPV 719
>BCOR_HUMAN (Q6W2J9) BCoR protein (BCL-6 corepressor)| Length = 1755 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = -3 Query: 287 GLVITGSEVPRPSCSPVLLRCAV 219 GLV++GSE+P+ + SP CA+ Sbjct: 474 GLVLSGSEIPKETLSPPGNGCAI 496
>ARGJ_BARQU (Q6G0Q6) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 412 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -2 Query: 306 STSANRWPGDNRKRGASAILFTGAPALRCAAPCVHIGSIGII 181 S +AN + G K+ A AIL A AL+ + I S G+I Sbjct: 83 SGNANAFTGRKGKQTADAILHAAASALKVKENEIFIASTGVI 124
>ZN507_HUMAN (Q8TCN5) Zinc finger protein 507| Length = 849 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/29 (31%), Positives = 12/29 (41%) Frame = -1 Query: 253 HPVHRCSCAALCCSMCTYRFHWDHSIRVH 167 H +H C C C FH+ +R H Sbjct: 583 HMIHHCKTRIYQCKQCEESFHYKSQLRNH 611
>BOC_HUMAN (Q9BWV1) Brother of CDO precursor (Protein BOC)| Length = 1114 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -3 Query: 326 LSMPNPALPQPIDGLVITGSEVPRPSCSPVLLRCAVL 216 L+ P P LP+ I+ V TG+ V R S P L+ VL Sbjct: 826 LAPPQPPLPETIERPVGTGAMVARSSDLPYLIVGVVL 862
>THIC_PROMP (Q7UZP7) Thiamine biosynthesis protein thiC| Length = 456 Score = 27.3 bits (59), Expect = 8.9 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 12/83 (14%) Frame = +2 Query: 137 RTYSALISYMMDSNGMIPMEPICTHGAAQRSAGAPVNRMAEAPRFLL-------SPGH-- 289 R ++ + M++ G +PM+ I + + + +EAP ++L SPG+ Sbjct: 264 RAWTHNVQVMVEGPGHVPMDQI------EFNVRKQMEECSEAPFYVLGPLVTDISPGYDH 317 Query: 290 ---RLAEVERGWAWTDGLCVVTP 349 + GW T LC VTP Sbjct: 318 ISSAIGAAMAGWYGTAMLCYVTP 340 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,066,486 Number of Sequences: 219361 Number of extensions: 1294941 Number of successful extensions: 3372 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3257 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3372 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
