>ALLP_BACSU (P94575) Probable allantoin permease (Allantoin transport protein)|
          Length = 490

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
 Frame = -3

Query: 552 PWRLLSSSES-FVFTWLLGNAALMGPIGGIVLADHYIVRRTALDVDALYSEEDDSPYYFQ 376
           PW+L+ S+ S + F  L+G   ++GP+ G+++AD++I+R+  L VD LYSE     Y+  
Sbjct: 363 PWKLMESATSVYAFLGLIGG--MLGPVAGVMMADYFIIRKRELSVDDLYSETGRYVYW-- 418

Query: 375 XXXXXXXXXXXXXXXXXXXXXFLHKVGVLPTMSKALVVAYDNAWFVSFFVAGATYCLL 202
                                 +  +G+   + K+L   YD +WFV   ++   Y +L
Sbjct: 419 ------KGYNYRAFAATMLGALISLIGMYVPVLKSL---YDISWFVGVLISFLFYIVL 467

>FUR4_SCHPO (Q10279) Uracil permease|
          Length = 581

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 24/58 (41%), Positives = 35/58 (60%)
 Frame = -3

Query: 552 PWRLLSSSESFVFTWLLGNAALMGPIGGIVLADHYIVRRTALDVDALYSEEDDSPYYF 379
           PW LLSS+ +F  T+L   +  +    G+++AD+Y VR+  + V  LYS    SPYYF
Sbjct: 397 PWNLLSSNNNFT-TYLSSYSVFLSSFAGVIIADYYFVRKGLIRVAPLYSSSSSSPYYF 453

>ALLP_ECOLI (P75712) Putative allantoin permease (Allantoin transport protein)|
          Length = 484

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
 Frame = -3

Query: 552 PWRLLSSSES-FVFTWLLGNAALMGPIGGIVLADHYIVRRTALDVDALYSEEDDSPYYFQ 376
           PW+L+ + +S ++F  ++G   ++GP+ G+++A +++V R  +++D LY+   D  YY  
Sbjct: 363 PWKLMENQDSIYLFLDIIGG--MLGPVIGVMMAHYFVVMRGQINLDELYTAPGDYKYYDN 420

Query: 375 XXXXXXXXXXXXXXXXXXXXXFLHKVGVLPTMSKALVVAYDNAWFVSFFVAGATYCLLRL 196
                                F+H +  L  +S          WFV   VA A Y LL+ 
Sbjct: 421 GFNLTAFSVTLVAVILSLGGKFIHFMEPLSRVS----------WFVGVIVAFAAYALLKK 470

Query: 195 QRGVE 181
           +   E
Sbjct: 471 RTTAE 475

>FUI1_YEAST (P38196) Uridine permease|
          Length = 639

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
 Frame = -3

Query: 552 PWRLLSSSESFVFTWLLGNAALMGPIGGIVLADHYIVRRTALDVDALYSEEDDSPY-YFQ 376
           PW LLSSS  F  T L   A  +  I G++ AD++IVR+  +++   Y+++  S Y Y +
Sbjct: 472 PWDLLSSSSKFT-TALAAYAVFLSAIAGVISADYFIVRKGYVNIFHCYTDKPGSYYMYNK 530

Query: 375 XXXXXXXXXXXXXXXXXXXXXFLHKVGVLPTMSKALVVAYDNAWFVSFFVAGATYCLL 202
                                FL  VGV   +  A+ V Y N +FV + +A  +YC+L
Sbjct: 531 YGTNWRAVVAYIFGIAPNFAGFLGSVGVSVPIG-AMKVYYLN-YFVGYLLAALSYCIL 586

>FUR4_YEAST (P05316) Uracil permease|
          Length = 633

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = -3

Query: 552 PWRLLSSSESFVFTWLLGNAALMGPIGGIVLADHYIVRRTALDVDALYSEEDDSPYYF 379
           PW L+++S  F    L   A  +  I G+V +D+++VRR  + +  +YS +  S Y +
Sbjct: 455 PWNLMATSSKFTMA-LSAYAIFLSSIAGVVCSDYFVVRRGYIKLTHIYSHQKGSFYMY 511

>DAL4_YEAST (Q04895) Allantoin permease (Allantoin transport protein)|
          Length = 635

 Score = 37.4 bits (85), Expect = 0.043
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = -3

Query: 552 PWRLLSSSESFVFTWLLGNAAL-MGPIGGIVLADHYIVRRTALDVDALYSEEDDSPYYF 379
           PW L++SS  F  T  LG  A+ +  I G++ AD+++VRR  + +  L+  +  S Y F
Sbjct: 457 PWNLMASSSKF--TSALGAYAIFLSSIAGVICADYFVVRRGYVKLTHLFLAQKGSFYMF 513

>UBP20_HUMAN (Q9Y2K6) Ubiquitin carboxyl-terminal hydrolase 20 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 20)
           (Ubiquitin-specific-processing protease 20)
           (Deubiquitinating enzyme 20)
          Length = 913

 Score = 33.5 bits (75), Expect = 0.62
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 457 REHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQRRGERTLGERECL 612
           R+ D+SD   +R     P EDE L+      R +GD + R G  +  E E L
Sbjct: 261 RDSDSSDTDEKREGDRSPSEDEFLSCDSSSDRGEGDGQGRGGGSSQAETELL 312

>SP96_DICDI (P14328) Spore coat protein SP96|
          Length = 600

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 19/76 (25%), Positives = 36/76 (47%)
 Frame = +2

Query: 455 SASTMPPIGPMSAAFPSSQVKTKLSLELSSRHGCKAMPSSAVASAPLANVNVCGASATXV 634
           SA++  P    +++ PSS   +  S   S+        S++ +SAP ++ +   AS++  
Sbjct: 472 SAASSSPSSSAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSSASSSSASSSSA 531

Query: 635 FAGATTLAAMLVVMMA 682
            + ATT A  +    A
Sbjct: 532 SSAATTAATTIATTAA 547

>Y2357_CORGL (P0C1E6) Probable GTP-binding protein Cgl2357/cg2589|
          Length = 501

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 163 TVLSFHFNPSLETEQAVGGAGDEETDEPG 249
           T+L FHF+P ++ E+   GAGD      G
Sbjct: 56  TLLDFHFHPHVKAERGANGAGDHRNGARG 84

>IF2_PSEU2 (Q4ZNR2) Translation initiation factor IF-2|
          Length = 841

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 403 LRVKRVDVQRSTPHYIVIREHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQ 573
           +R K+V VQRS       R+ +  +R      + Q  E+EA   AE+  R Q  A Q
Sbjct: 86  VRKKKVFVQRSPEEIEAERKREMDERRAVENAARQKAEEEAKRRAEEDARSQPAASQ 142

>DPO3A_STRCO (Q9Z618) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1179

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 4/23 (17%)
 Frame = +1

Query: 214  GGAGDEETDEPG----VVIGHDE 270
            GG GDE++DEPG    VV G DE
Sbjct: 946  GGMGDEQSDEPGFGLDVVFGEDE 968

>ASPX_PAPHA (Q06990) Acrosomal protein SP-10 precursor (Acrosomal vesicle|
           protein 1)
          Length = 285

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +1

Query: 460 EHDASDRPHERRVS------EQPGEDEALAGAEQPPRLQGDAEQRRGERTLGE 600
           EH + ++P + ++S      EQP  + A    EQP   Q   E   GE++LGE
Sbjct: 132 EHASGEQPSDEQLSGEHASGEQPSGEHA--SGEQPSGEQPSGEHASGEQSLGE 182

>PRM2_MACNE (P35298) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 103

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = +1

Query: 457 REHDASDRPHERRVSEQPGEDEALAGAEQ----PPRLQGDAEQRRGERTLGERECLRRER 624
           R    S+RPHE    +  G+D+   G E+    P  ++      RG      R C RR  
Sbjct: 5   RMRSLSERPHEVHGQQVHGQDQGHNGQEEQGLNPEHVEVYERTHRGHSHHRRRRCSRRRL 64

Query: 625 H 627
           H
Sbjct: 65  H 65

>PRM2_MACFU (P61253) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 103

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = +1

Query: 457 REHDASDRPHERRVSEQPGEDEALAGAEQ----PPRLQGDAEQRRGERTLGERECLRRER 624
           R    S+RPHE    +  G+D+   G E+    P  ++      RG      R C RR  
Sbjct: 5   RMRSLSERPHEVHGQQVHGQDQGHNGQEEQGLNPEHVEVYERTHRGHSHHRRRRCSRRRL 64

Query: 625 H 627
           H
Sbjct: 65  H 65


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,373,311
Number of Sequences: 219361
Number of extensions: 1168010
Number of successful extensions: 4309
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4292
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)