ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39k07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome... 143 3e-31
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 143 3e-31
3dbj|AK101913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 3e-31
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 143 3e-31
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 133 3e-28
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 133 3e-28
7emb|AL713927.3|CNS07YP4 Oryza sativa chromosome 12, . BAC OSJNBa... 133 3e-28
8gb|AY105872.1| Zea mays PCO079046 mRNA sequence 105 7e-20
9gb|BT017471.1| Zea mays clone EL01N0408D01.c mRNA sequence 98 2e-17
10ref|XM_483522.1| Oryza sativa (japonica cultivar-group), mRNA 76 6e-11
11ref|XM_507308.1| PREDICTED Oryza sativa (japonica cultivar-group... 76 6e-11
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 76 6e-11
13dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic D... 76 6e-11
14dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic D... 76 6e-11
15dbj|AK106127.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 6e-11
16dbj|AK070510.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 6e-11
17gb|BT018599.1| Zea mays clone EL01N0449A02.d mRNA sequence 68 2e-08
18gb|BT017750.1| Zea mays clone EL01N0450B09.c mRNA sequence 52 0.001
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.015
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.015
21gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.015
22dbj|AK109114.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
23ref|XM_465955.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.23
24dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.23
25dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.23
26dbj|AK103266.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.23
27gb|AY161314.1| Chaenocephalus aceratus creatine kinase muscle is... 42 0.90
28gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.90
29emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete ... 42 0.90
30emb|BX640424.1| Bordetella parapertussis strain 12822, complete ... 42 0.90
31gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar N... 42 0.90
32dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.90
33dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.90
34dbj|AK120810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.90
35gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.90
36dbj|AB028130.1| Oryza sativa mRNA for Dof zinc finger protein, c... 42 0.90
37ref|NM_124457.2| Arabidopsis thaliana unknown protein AT5G50790 ... 40 3.6
38gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome... 40 3.6
39gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, comple... 40 3.6
40gb|AY034098.1| Oreochromis mossambicus muscle-type creatine kina... 40 3.6
41dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 3.6
42gb|AY064674.1| Arabidopsis thaliana MtN3-like protein (At5g50790... 40 3.6
43gb|AY054548.1| Arabidopsis thaliana MtN3-like protein (At5g50790... 40 3.6
44dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
45dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 40 3.6
46emb|BX829624.1|CNS0A18V Arabidopsis thaliana Full-length cDNA Co... 40 3.6
47dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.6
48gb|AY084672.1| Arabidopsis thaliana clone 114681 mRNA, complete ... 40 3.6
49dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
50dbj|AP004136.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
51dbj|AB023037.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 3.6
52dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
53dbj|AP003865.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
54dbj|AK065640.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
55gb|AY900120.1| Oryza sativa (japonica cultivar-group) SNAP1 (SNA... 40 3.6 
>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0008H02, complete sequence
          Length = 143438

 Score =  143 bits (72), Expect = 3e-31
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                         
Query: 158   gttgatggtgatgaggaggccctcgccggtcttgaccagcgcgtagaagatccacagcat 217
             |||||||||||||||||||| |||| ||| ||||| |||||||||| |||||||||||||
Sbjct: 82424 gttgatggtgatgaggaggcactcgtcggacttgagcagcgcgtagtagatccacagcat 82483

                                                         
Query: 218   cgcgctgaacagggccacgacgtagggcaccgactggaacccct 261
             |||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 82484 cgcgctgaacagcgccaccacgtagggtaccgactggaacccct 82527
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  143 bits (72), Expect = 3e-31
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                            
Query: 158      gttgatggtgatgaggaggccctcgccggtcttgaccagcgcgtagaagatccacagcat 217
                |||||||||||||||||||| |||| ||| ||||| |||||||||| |||||||||||||
Sbjct: 17574613 gttgatggtgatgaggaggcactcgtcggacttgagcagcgcgtagtagatccacagcat 17574672

                                                            
Query: 218      cgcgctgaacagggccacgacgtagggcaccgactggaacccct 261
                |||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 17574673 cgcgctgaacagcgccaccacgtagggtaccgactggaacccct 17574716



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 134      catgcatgagccatgcatgg 153
                ||||||||||||||||||||
Sbjct: 16469196 catgcatgagccatgcatgg 16469177
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>dbj|AK101913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071H09, full
           insert sequence
          Length = 1494

 Score =  143 bits (72), Expect = 3e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                       
Query: 158 gttgatggtgatgaggaggccctcgccggtcttgaccagcgcgtagaagatccacagcat 217
           |||||||||||||||||||| |||| ||| ||||| |||||||||| |||||||||||||
Sbjct: 460 gttgatggtgatgaggaggcactcgtcggacttgagcagcgcgtagtagatccacagcat 401

                                                       
Query: 218 cgcgctgaacagggccacgacgtagggcaccgactggaacccct 261
           |||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 400 cgcgctgaacagcgccaccacgtagggtaccgactggaacccct 357
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  143 bits (72), Expect = 3e-31
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                            
Query: 158      gttgatggtgatgaggaggccctcgccggtcttgaccagcgcgtagaagatccacagcat 217
                |||||||||||||||||||| |||| ||| ||||| |||||||||| |||||||||||||
Sbjct: 17668437 gttgatggtgatgaggaggcactcgtcggacttgagcagcgcgtagtagatccacagcat 17668496

                                                            
Query: 218      cgcgctgaacagggccacgacgtagggcaccgactggaacccct 261
                |||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 17668497 cgcgctgaacagcgccaccacgtagggtaccgactggaacccct 17668540



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 134      catgcatgagccatgcatgg 153
                ||||||||||||||||||||
Sbjct: 16560200 catgcatgagccatgcatgg 16560181



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 170      gaggaggccctcgccggtct 189
                ||||||||||||||||||||
Sbjct: 10762337 gaggaggccctcgccggtct 10762356
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  133 bits (67), Expect = 3e-28
 Identities = 97/107 (90%)
 Strand = Plus / Plus

                                                                            
Query: 156      gcgttgatggtgatgaggaggccctcgccggtcttgaccagcgcgtagaagatccacagc 215
                ||||||||||||||||||||| |||||  || ||||| ||||||||||||||||||||||
Sbjct: 17344722 gcgttgatggtgatgaggagggcctcgttggacttgatcagcgcgtagaagatccacagc 17344781

                                                               
Query: 216      atcgcgctgaacagggccacgacgtagggcaccgactggaacccctc 262
                || |||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct: 17344782 atggcgctgaagagcgccaccacgtacggcaccgactggaacccctc 17344828
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  133 bits (67), Expect = 3e-28
 Identities = 97/107 (90%)
 Strand = Plus / Plus

                                                                            
Query: 156      gcgttgatggtgatgaggaggccctcgccggtcttgaccagcgcgtagaagatccacagc 215
                ||||||||||||||||||||| |||||  || ||||| ||||||||||||||||||||||
Sbjct: 17299093 gcgttgatggtgatgaggagggcctcgttggacttgatcagcgcgtagaagatccacagc 17299152

                                                               
Query: 216      atcgcgctgaacagggccacgacgtagggcaccgactggaacccctc 262
                || |||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct: 17299153 atggcgctgaagagcgccaccacgtacggcaccgactggaacccctc 17299199
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>emb|AL713927.3|CNS07YP4 Oryza sativa chromosome 12, . BAC OSJNBa0021B03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 154826

 Score =  133 bits (67), Expect = 3e-28
 Identities = 97/107 (90%)
 Strand = Plus / Minus

                                                                         
Query: 156   gcgttgatggtgatgaggaggccctcgccggtcttgaccagcgcgtagaagatccacagc 215
             ||||||||||||||||||||| |||||  || ||||| ||||||||||||||||||||||
Sbjct: 58647 gcgttgatggtgatgaggagggcctcgttggacttgatcagcgcgtagaagatccacagc 58588

                                                            
Query: 216   atcgcgctgaacagggccacgacgtagggcaccgactggaacccctc 262
             || |||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct: 58587 atggcgctgaagagcgccaccacgtacggcaccgactggaacccctc 58541
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>gb|AY105872.1| Zea mays PCO079046 mRNA sequence
          Length = 1346

 Score =  105 bits (53), Expect = 7e-20
 Identities = 89/101 (88%)
 Strand = Plus / Minus

                                                                       
Query: 156 gcgttgatggtgatgaggaggccctcgccggtcttgaccagcgcgtagaagatccacagc 215
           ||||||||||||||||||| |  ||||  || ||||| ||| ||||||||||||||||||
Sbjct: 474 gcgttgatggtgatgaggaaggtctcgttggacttgatcagtgcgtagaagatccacagc 415

                                                    
Query: 216 atcgcgctgaacagggccacgacgtagggcaccgactggaa 256
           || |||||||||||||| || |||||||| |||||||||||
Sbjct: 414 atggcgctgaacagggcaaccacgtagggaaccgactggaa 374
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>gb|BT017471.1| Zea mays clone EL01N0408D01.c mRNA sequence
          Length = 1159

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                       
Query: 158 gttgatggtgatgaggaggccctcgccggtcttgaccagcgcgtagaagatccacagcat 217
           ||||||||||||||| ||   ||||  || ||||| |||||||||| |||||||||||||
Sbjct: 112 gttgatggtgatgagcagcaactcgttggacttgagcagcgcgtagtagatccacagcat 53

                                                        
Query: 218 cgcgctgaacagggccacgacgtagggcaccgactggaacccctc 262
            |||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct: 52  ggcgctgaagagcgccaccacgtacggcaccgactggaacccctc 8
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>ref|XM_483522.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1500

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                       
Query: 185 ggtcttgaccagcgcgtagaagatccacagcatcgcgctgaacagggccacgacgtaggg 244
           |||||| ||||||||||||||||||||||||| || |||||| || ||||| ||||| ||
Sbjct: 381 ggtcttcaccagcgcgtagaagatccacagcaccgagctgaagagcgccaccacgtacgg 322

                 
Query: 245 caccga 250
           ||||||
Sbjct: 321 caccga 316
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>ref|XM_507308.1| PREDICTED Oryza sativa (japonica cultivar-group), P0702C09.33 mRNA
          Length = 1517

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                       
Query: 185 ggtcttgaccagcgcgtagaagatccacagcatcgcgctgaacagggccacgacgtaggg 244
           |||||| ||||||||||||||||||||||||| || |||||| || ||||| ||||| ||
Sbjct: 382 ggtcttcaccagcgcgtagaagatccacagcaccgagctgaagagcgccaccacgtacgg 323

                 
Query: 245 caccga 250
           ||||||
Sbjct: 322 caccga 317
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                            
Query: 185      ggtcttgaccagcgcgtagaagatccacagcatcgcgctgaacagggccacgacgtaggg 244
                |||||| ||||||||||||||||||||||||| || |||||| || ||||| ||||| ||
Sbjct: 26720031 ggtcttcaccagcgcgtagaagatccacagcaccgagctgaagagcgccaccacgtacgg 26720090

                      
Query: 245      caccga 250
                ||||||
Sbjct: 26720091 caccga 26720096



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 138      catgagccatgcatggctgc 157
                ||||||||||||||||||||
Sbjct: 26003275 catgagccatgcatggctgc 26003256
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>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0702C09
          Length = 138203

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                          
Query: 185    ggtcttgaccagcgcgtagaagatccacagcatcgcgctgaacagggccacgacgtaggg 244
              |||||| ||||||||||||||||||||||||| || |||||| || ||||| ||||| ||
Sbjct: 131558 ggtcttcaccagcgcgtagaagatccacagcaccgagctgaagagcgccaccacgtacgg 131617

                    
Query: 245    caccga 250
              ||||||
Sbjct: 131618 caccga 131623
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>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0033D24
          Length = 186132

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                         
Query: 185   ggtcttgaccagcgcgtagaagatccacagcatcgcgctgaacagggccacgacgtaggg 244
             |||||| ||||||||||||||||||||||||| || |||||| || ||||| ||||| ||
Sbjct: 63373 ggtcttcaccagcgcgtagaagatccacagcaccgagctgaagagcgccaccacgtacgg 63432

                   
Query: 245   caccga 250
             ||||||
Sbjct: 63433 caccga 63438
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>dbj|AK106127.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F06, full
           insert sequence
          Length = 1500

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                       
Query: 185 ggtcttgaccagcgcgtagaagatccacagcatcgcgctgaacagggccacgacgtaggg 244
           |||||| ||||||||||||||||||||||||| || |||||| || ||||| ||||| ||
Sbjct: 381 ggtcttcaccagcgcgtagaagatccacagcaccgagctgaagagcgccaccacgtacgg 322

                 
Query: 245 caccga 250
           ||||||
Sbjct: 321 caccga 316
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>dbj|AK070510.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056B21, full
           insert sequence
          Length = 1517

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                       
Query: 185 ggtcttgaccagcgcgtagaagatccacagcatcgcgctgaacagggccacgacgtaggg 244
           |||||| ||||||||||||||||||||||||| || |||||| || ||||| ||||| ||
Sbjct: 382 ggtcttcaccagcgcgtagaagatccacagcaccgagctgaagagcgccaccacgtacgg 323

                 
Query: 245 caccga 250
           ||||||
Sbjct: 322 caccga 317
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>gb|BT018599.1| Zea mays clone EL01N0449A02.d mRNA sequence
          Length = 1762

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                       
Query: 181 cgccggtcttgaccagcgcgtagaagatccacagcatcgcgctgaacagggccacgacgt 240
           |||||| ||||| ||||||||||||||||||||||||   ||||||||| | ||| ||||
Sbjct: 454 cgccggacttgagcagcgcgtagaagatccacagcatgcagctgaacagcgtcaccacgt 395

                                 
Query: 241 agggcaccgactggaacccctc 262
           | ||   |||||||||||||||
Sbjct: 394 acggggtcgactggaacccctc 373
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>gb|BT017750.1| Zea mays clone EL01N0450B09.c mRNA sequence
          Length = 1251

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 185 ggtcttgaccagcgcgtagaagatccacagcatcgcgctgaacagggccacgacgtaggg 244
           |||||| ||||||||||| | |||||||||| |   ||||||||| ||||| ||||| ||
Sbjct: 338 ggtcttcaccagcgcgtacaggatccacagcgtgcagctgaacagagccaccacgtacgg 279

                 
Query: 245 caccga 250
           ||||||
Sbjct: 278 caccga 273
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                            
Query: 198      gcgtagaagatccacagcatcgcgctgaacagggccacgacgtagggcaccgactggaac 257
                |||||| ||| ||||||||| ||||| | ||| |||||  |||| |||||||||||||||
Sbjct: 12981910 gcgtagtagagccacagcattgcgctcagcagcgccaccgcgtacggcaccgactggaac 12981969
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                            
Query: 198      gcgtagaagatccacagcatcgcgctgaacagggccacgacgtagggcaccgactggaac 257
                |||||| ||| ||||||||| ||||| | ||| |||||  |||| |||||||||||||||
Sbjct: 12978685 gcgtagtagagccacagcattgcgctcagcagcgccaccgcgtacggcaccgactggaac 12978744
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>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0006D11, complete sequence
          Length = 176637

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                         
Query: 198   gcgtagaagatccacagcatcgcgctgaacagggccacgacgtagggcaccgactggaac 257
             |||||| ||| ||||||||| ||||| | ||| |||||  |||| |||||||||||||||
Sbjct: 59608 gcgtagtagagccacagcattgcgctcagcagcgccaccgcgtacggcaccgactggaac 59667
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>dbj|AK109114.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-C05, full
           insert sequence
          Length = 1492

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 198 gcgtagaagatccacagcatcgcgctgaacagggccacgacgtagggcaccgactggaac 257
           |||||| ||| ||||||||| ||||| | ||| |||||  |||| |||||||||||||||
Sbjct: 334 gcgtagtagagccacagcattgcgctcagcagcgccaccgcgtacggcaccgactggaac 275
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>ref|XM_465955.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1562

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 67/82 (81%)
 Strand = Plus / Minus

                                                                       
Query: 181 cgccggtcttgaccagcgcgtagaagatccacagcatcgcgctgaacagggccacgacgt 240
           |||||| |||||| | ||||||| | |||||||||||   |||||| || | ||| ||||
Sbjct: 408 cgccggacttgacgaacgcgtagtacatccacagcatgcagctgaagagcgtcaccacgt 349

                                 
Query: 241 agggcaccgactggaacccctc 262
           | |||  |||||||||||||||
Sbjct: 348 acggcgtcgactggaacccctc 327
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 67/82 (81%)
 Strand = Plus / Plus

                                                                            
Query: 181      cgccggtcttgaccagcgcgtagaagatccacagcatcgcgctgaacagggccacgacgt 240
                |||||| |||||| | ||||||| | |||||||||||   |||||| || | ||| ||||
Sbjct: 18555448 cgccggacttgacgaacgcgtagtacatccacagcatgcagctgaagagcgtcaccacgt 18555507

                                      
Query: 241      agggcaccgactggaacccctc 262
                | |||  |||||||||||||||
Sbjct: 18555508 acggcgtcgactggaacccctc 18555529



 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 134      catgcatgagccatgcatggc 154
                |||||||||||||||||||||
Sbjct: 27454660 catgcatgagccatgcatggc 27454680



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 170      gaggaggccctcgccggtct 189
                ||||||||||||||||||||
Sbjct: 14051068 gaggaggccctcgccggtct 14051087
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>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1789_D08
          Length = 128673

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 67/82 (81%)
 Strand = Plus / Plus

                                                                         
Query: 181   cgccggtcttgaccagcgcgtagaagatccacagcatcgcgctgaacagggccacgacgt 240
             |||||| |||||| | ||||||| | |||||||||||   |||||| || | ||| ||||
Sbjct: 96587 cgccggacttgacgaacgcgtagtacatccacagcatgcagctgaagagcgtcaccacgt 96646

                                   
Query: 241   agggcaccgactggaacccctc 262
             | |||  |||||||||||||||
Sbjct: 96647 acggcgtcgactggaacccctc 96668
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>dbj|AK103266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124G19, full
           insert sequence
          Length = 1562

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 67/82 (81%)
 Strand = Plus / Minus

                                                                       
Query: 181 cgccggtcttgaccagcgcgtagaagatccacagcatcgcgctgaacagggccacgacgt 240
           |||||| |||||| | ||||||| | |||||||||||   |||||| || | ||| ||||
Sbjct: 408 cgccggacttgacgaacgcgtagtacatccacagcatgcagctgaagagcgtcaccacgt 349

                                 
Query: 241 agggcaccgactggaacccctc 262
           | |||  |||||||||||||||
Sbjct: 348 acggcgtcgactggaacccctc 327
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>gb|AY161314.1| Chaenocephalus aceratus creatine kinase muscle isoform 2 mRNA,
           complete cds
          Length = 1523

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 151 tggctgcgttgatggtgatgaggag 175
           ||||||||||| |||||||||||||
Sbjct: 295 tggctgcgttgctggtgatgaggag 319
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>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02,
             complete sequence
          Length = 131922

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 134   catgcatgagccatgcatggc 154
             |||||||||||||||||||||
Sbjct: 34865 catgcatgagccatgcatggc 34885
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>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16
          Length = 347786

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 176    gccctcgccggtcttgaccagcgcg 200
              ||||| |||||||||||||||||||
Sbjct: 124282 gccctggccggtcttgaccagcgcg 124258



 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 176    gccctcgccggtcttgaccagcgcg 200
              ||||| |||||||||||||||||||
Sbjct: 123478 gccctggccggtcttgaccagcgcg 123454



 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 176    gccctcgccggtcttgaccagcgcg 200
              ||||| |||||||||||||||||||
Sbjct: 122134 gccctggccggtcttgaccagcgcg 122110



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    cgccggtcttgaccagcgcg 200
              ||||||||||||||||||||
Sbjct: 121868 cgccggtcttgaccagcgcg 121849
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>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14
          Length = 349146

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 176    gccctcgccggtcttgaccagcgcg 200
              ||||| |||||||||||||||||||
Sbjct: 126095 gccctggccggtcttgaccagcgcg 126071



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    cgccggtcttgaccagcgcg 200
              ||||||||||||||||||||
Sbjct: 125829 cgccggtcttgaccagcgcg 125810
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>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
             OJ1208D02 from chromosome 10, complete sequence
          Length = 120132

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 134   catgcatgagccatgcatggc 154
             |||||||||||||||||||||
Sbjct: 94997 catgcatgagccatgcatggc 95017
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 134      catgcatgagccatgcatggc 154
                |||||||||||||||||||||
Sbjct: 11226877 catgcatgagccatgcatggc 11226897
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>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0657H12
          Length = 142688

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 134   catgcatgagccatgcatggc 154
             |||||||||||||||||||||
Sbjct: 46382 catgcatgagccatgcatggc 46402
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>dbj|AK120810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014F11, full
            insert sequence
          Length = 1744

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 134  catgcatgagccatgcatggc 154
            |||||||||||||||||||||
Sbjct: 1296 catgcatgagccatgcatggc 1276
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 134      catgcatgagccatgcatggc 154
                |||||||||||||||||||||
Sbjct: 11233317 catgcatgagccatgcatggc 11233337
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>dbj|AB028130.1| Oryza sativa mRNA for Dof zinc finger protein, complete cds
          Length = 1550

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 134  catgcatgagccatgcatggc 154
            |||||||||||||||||||||
Sbjct: 1424 catgcatgagccatgcatggc 1404
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>ref|NM_124457.2| Arabidopsis thaliana unknown protein AT5G50790 mRNA, complete cds
          Length = 1250

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 198 gcgtagaagatccacagcatcgcgctgaacag 229
           |||||| | ||||| |||||||||||||||||
Sbjct: 357 gcgtagtacatccatagcatcgcgctgaacag 326
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>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057E15,
              complete sequence
          Length = 149035

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    catgcatgagccatgcatgg 153
              ||||||||||||||||||||
Sbjct: 109795 catgcatgagccatgcatgg 109776
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>gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, complete sequence
          Length = 141509

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   ctcatgcatgagccatgcat 151
             ||||||||||||||||||||
Sbjct: 65253 ctcatgcatgagccatgcat 65234
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>gb|AY034098.1| Oreochromis mossambicus muscle-type creatine kinase CKM2 mRNA,
           complete cds
          Length = 1642

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 152 ggctgcgttgatggtgatgaggag 175
           |||||||||| |||||||||||||
Sbjct: 302 ggctgcgttgctggtgatgaggag 325
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 35      gatataacagaacaaaggca 54
               ||||||||||||||||||||
Sbjct: 5016933 gatataacagaacaaaggca 5016914
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>gb|AY064674.1| Arabidopsis thaliana MtN3-like protein (At5g50790; MFB16.19) mRNA,
           complete cds
          Length = 934

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 198 gcgtagaagatccacagcatcgcgctgaacag 229
           |||||| | ||||| |||||||||||||||||
Sbjct: 185 gcgtagtacatccatagcatcgcgctgaacag 154
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>gb|AY054548.1| Arabidopsis thaliana MtN3-like protein (At5g50790; MFB16.19) mRNA,
           complete cds
          Length = 1250

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 198 gcgtagaagatccacagcatcgcgctgaacag 229
           |||||| | ||||| |||||||||||||||||
Sbjct: 357 gcgtagtacatccatagcatcgcgctgaacag 326
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 134     catgcatgagccatgcatgg 153
               ||||||||||||||||||||
Sbjct: 2370834 catgcatgagccatgcatgg 2370853
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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 170     gaggaggccctcgccggtct 189
               ||||||||||||||||||||
Sbjct: 1241569 gaggaggccctcgccggtct 1241550
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>emb|BX829624.1|CNS0A18V Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB25ZF08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1177

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 198 gcgtagaagatccacagcatcgcgctgaacag 229
           |||||| | ||||| |||||||||||||||||
Sbjct: 321 gcgtagtacatccatagcatcgcgctgaacag 290
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 195     agcgcgtagaagatccacagcatc 218
               |||||| |||||||||||||||||
Sbjct: 2798984 agcgcgcagaagatccacagcatc 2799007
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>gb|AY084672.1| Arabidopsis thaliana clone 114681 mRNA, complete sequence
          Length = 1221

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 198 gcgtagaagatccacagcatcgcgctgaacag 229
           |||||| | ||||| |||||||||||||||||
Sbjct: 355 gcgtagtacatccatagcatcgcgctgaacag 324
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>dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0077B15
          Length = 139345

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   catgcatgagccatgcatgg 153
             ||||||||||||||||||||
Sbjct: 73842 catgcatgagccatgcatgg 73861
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>dbj|AP004136.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1287_H05
          Length = 97812

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   gaggaggccctcgccggtct 189
             ||||||||||||||||||||
Sbjct: 32578 gaggaggccctcgccggtct 32597
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>dbj|AB023037.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFB16
          Length = 66087

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 198   gcgtagaagatccacagcatcgcgctgaacag 229
             |||||| | ||||| |||||||||||||||||
Sbjct: 61573 gcgtagtacatccatagcatcgcgctgaacag 61604
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>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1186_G01
          Length = 112077

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   catgagccatgcatggctgc 157
             ||||||||||||||||||||
Sbjct: 38836 catgagccatgcatggctgc 38817
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>dbj|AP003865.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1081_B12
          Length = 124741

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   catgagccatgcatggctgc 157
             ||||||||||||||||||||
Sbjct: 88152 catgagccatgcatggctgc 88133
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>dbj|AK065640.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038P06, full
           insert sequence
          Length = 2191

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 gaggaggccctcgccggtct 189
           ||||||||||||||||||||
Sbjct: 336 gaggaggccctcgccggtct 317
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>gb|AY900120.1| Oryza sativa (japonica cultivar-group) SNAP1 (SNAP1) mRNA, complete
           cds
          Length = 1014

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 gaggaggccctcgccggtct 189
           ||||||||||||||||||||
Sbjct: 115 gaggaggccctcgccggtct 96


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,971,191
Number of Sequences: 3902068
Number of extensions: 1971191
Number of successful extensions: 32898
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32581
Number of HSP's gapped (non-prelim): 316
length of query: 273
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 251
effective length of database: 17,147,199,772
effective search space: 4303947142772
effective search space used: 4303947142772
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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