ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39j07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 9e-06
2dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic D... 60 9e-06
3gb|AC097451.2| Homo sapiens BAC clone RP11-1E6 from 4, complete ... 48 0.036
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
5dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
6gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.56
7gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 44 0.56
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
9gb|AC079750.5| Homo sapiens BAC clone RP11-33L3 from 2, complete... 44 0.56
10dbj|AK119284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.56
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.56
12gb|AC159008.2| Mus musculus BAC clone RP23-14E14 from chromosome... 42 2.2
13emb|CR407551.12| Zebrafish DNA sequence from clone DKEYP-44H3 in... 42 2.2
14emb|AL832510.1|HSM803818 Homo sapiens mRNA; cDNA DKFZp667A191 (f... 42 2.2
15gb|BC024187.2| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypepti... 42 2.2
16emb|AL592222.11| Mouse DNA sequence from clone RP23-366M19 on ch... 42 2.2
17emb|CR859890.1| Pongo pygmaeus mRNA; cDNA DKFZp469B1516 (from cl... 42 2.2
18gb|AC091271.8| Homo sapiens chromosome 17, clone RP11-758H9, com... 42 2.2
19ref|XM_942276.1| PREDICTED: Homo sapiens DEAH (Asp-Glu-Ala-His) ... 42 2.2
20ref|XM_945868.1| PREDICTED: Homo sapiens DEAH (Asp-Glu-Ala-His) ... 42 2.2
21gb|DQ004278.1| Pseudomonas viridiflava strain RMX3.1b pectate ly... 42 2.2
22ref|NM_024612.3| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypep... 42 2.2
23gb|AF260270.1|AF260270 Homo sapiens PAD mRNA, complete cds 42 2.2
24gb|AC040965.8| Homo sapiens chromosome 8, clone RP11-481K20, com... 42 2.2
25gb|AF461690.1| Homo sapiens DEAD-box containing helicase-like pr... 42 2.2
26gb|AC068282.8| Homo sapiens BAC clone RP11-314L11 from 2, comple... 42 2.2
27gb|AC105038.5| Homo sapiens chromosome 8, clone CTD-2351P9, comp... 42 2.2
28dbj|AK025713.1| Homo sapiens cDNA: FLJ22060 fis, clone HEP10094 42 2.2
29emb|CT573129.9| Zebrafish DNA sequence from clone CH73-266E21 in... 42 2.2
30gb|AC006270.1|AC006270 Homo sapiens chromosome 17, clone hRPK.55... 42 2.2
31ref|XM_466747.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.8
32ref|XM_648292.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 8.8
33gb|AC122726.21| Medicago truncatula clone mth2-23o24, complete s... 40 8.8
34emb|AL590611.7| Human DNA sequence from clone RP11-138K10 on chr... 40 8.8
35emb|CR391999.9| Zebrafish DNA sequence from clone CH211-261L7 in... 40 8.8
36gb|AC010600.6| Homo sapiens chromosome 5 clone CTC-564D18, compl... 40 8.8
37gb|AC020936.5| Homo sapiens chromosome 5 clone CTD-2291O8, compl... 40 8.8
38emb|CR391943.6| Zebrafish DNA sequence from clone DKEY-15M21 in ... 40 8.8
39gb|AC016558.6| Homo sapiens chromosome 5 clone CTC-420I8, comple... 40 8.8
40gb|AF319521.1|AF319521 Homo sapiens ARG147 mRNA, complete cds 40 8.8
41gb|AC079227.12| Homo sapiens BAC clone RP11-80B23 from 4, comple... 40 8.8
42gb|AC079782.6| Homo sapiens BAC clone RP11-385J23 from 2, comple... 40 8.8
43gb|AC008430.3|AC008430 Homo sapiens chromosome 5 clone CTC-310F2... 40 8.8
44dbj|AP004857.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
45gb|AC154321.2| Mus musculus BAC clone RP23-316B9 from 13, comple... 40 8.8
46emb|BX649543.6| Zebrafish DNA sequence from clone DKEY-238K23 in... 40 8.8
47gb|AC151997.2| Mus musculus BAC clone RP23-138O21 from 8, comple... 40 8.8
48emb|AL607142.16| Mouse DNA sequence from clone RP23-98J9 on chro... 40 8.8 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 84/102 (82%)
 Strand = Plus / Plus

                                                                            
Query: 538      acctcaaactccaacacagccaacacggcttttgggatagcaaccattcttagatcgacg 597
                ||||||||||||||   | |||| || ||| | ||||||||||||||||||||||| |  
Sbjct: 24482026 acctcaaactccaaacgaaccaataccgctctggggatagcaaccattcttagatcaaga 24482085

                                                          
Query: 598      ctgccgtggtggccagtgttaatgtgccaatggagcctttca 639
                 ||| |  ||| |||||||  |||||||||||||||||||||
Sbjct: 24482086 gtgctgaagtgaccagtgtcgatgtgccaatggagcctttca 24482127



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 415      gtgaccggtggtagcctgcaaacacgcaacttgccattgaag 456
                |||| |||||||||| ||| ||||| ||||||||||||||||
Sbjct: 24481903 gtgaacggtggtagcttgccaacactcaacttgccattgaag 24481944



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 153      gacatggttcacacaggctagaccatgt 180
                ||||||||||||||| | ||||||||||
Sbjct: 24400289 gacatggttcacacatgatagaccatgt 24400316



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 8       caaacgttggacatataaat 27
               ||||||||||||||||||||
Sbjct: 7367897 caaacgttggacatataaat 7367878
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>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1792_D02
          Length = 141649

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 84/102 (82%)
 Strand = Plus / Plus

                                                                          
Query: 538    acctcaaactccaacacagccaacacggcttttgggatagcaaccattcttagatcgacg 597
              ||||||||||||||   | |||| || ||| | ||||||||||||||||||||||| |  
Sbjct: 110232 acctcaaactccaaacgaaccaataccgctctggggatagcaaccattcttagatcaaga 110291

                                                        
Query: 598    ctgccgtggtggccagtgttaatgtgccaatggagcctttca 639
               ||| |  ||| |||||||  |||||||||||||||||||||
Sbjct: 110292 gtgctgaagtgaccagtgtcgatgtgccaatggagcctttca 110333



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 415    gtgaccggtggtagcctgcaaacacgcaacttgccattgaag 456
              |||| |||||||||| ||| ||||| ||||||||||||||||
Sbjct: 110109 gtgaacggtggtagcttgccaacactcaacttgccattgaag 110150



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 153   gacatggttcacacaggctagaccatgt 180
             ||||||||||||||| | ||||||||||
Sbjct: 28495 gacatggttcacacatgatagaccatgt 28522
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>gb|AC097451.2| Homo sapiens BAC clone RP11-1E6 from 4, complete sequence
          Length = 146808

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 93    ctaagaaaacacttttatataaaa 116
             ||||||||||||||||||||||||
Sbjct: 32844 ctaagaaaacacttttatataaaa 32867
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 8       caaacgttggacatataaatcta 30
               |||||||||||||||||||||||
Sbjct: 5172765 caaacgttggacatataaatcta 5172787
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>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1715_A07
          Length = 130907

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 8     caaacgttggacatataaatcta 30
             |||||||||||||||||||||||
Sbjct: 39479 caaacgttggacatataaatcta 39501
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>gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0086N07 map S790A, complete sequence
          Length = 178523

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 9     aaacgttggacatataaatcta 30
             ||||||||||||||||||||||
Sbjct: 54319 aaacgttggacatataaatcta 54340
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 290     taatgaaaatatccgggaattt 311
               ||||||||||||||||||||||
Sbjct: 1008449 taatgaaaatatccgggaattt 1008428
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 9        aaacgttggacatataaatcta 30
                ||||||||||||||||||||||
Sbjct: 13129761 aaacgttggacatataaatcta 13129740
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>gb|AC079750.5| Homo sapiens BAC clone RP11-33L3 from 2, complete sequence
          Length = 103089

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 94    taagaaaacacttttatataaaagta 119
             ||||||||||||||||| ||||||||
Sbjct: 57177 taagaaaacacttttatttaaaagta 57152
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>dbj|AK119284.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-C09, full
            insert sequence
          Length = 2705

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 9    aaacgttggacatataaatcta 30
            ||||||||||||||||||||||
Sbjct: 1291 aaacgttggacatataaatcta 1312
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 9        aaacgttggacatataaatcta 30
                ||||||||||||||||||||||
Sbjct: 13209940 aaacgttggacatataaatcta 13209919
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>gb|AC159008.2| Mus musculus BAC clone RP23-14E14 from chromosome 7, complete sequence
          Length = 239149

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 103    acttttatataaaagtatatt 123
              |||||||||||||||||||||
Sbjct: 113654 acttttatataaaagtatatt 113674
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>emb|CR407551.12| Zebrafish DNA sequence from clone DKEYP-44H3 in linkage group 6,
             complete sequence
          Length = 95004

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 216   ttgaaatttttgtagagcttc 236
             |||||||||||||||||||||
Sbjct: 23358 ttgaaatttttgtagagcttc 23378
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>emb|AL832510.1|HSM803818 Homo sapiens mRNA; cDNA DKFZp667A191 (from clone DKFZp667A191)
          Length = 2914

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 105  ttttatataaaagtatattgt 125
            |||||||||||||||||||||
Sbjct: 2351 ttttatataaaagtatattgt 2371
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>gb|BC024187.2| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40, mRNA (cDNA
            clone MGC:26626 IMAGE:4822080), complete cds
          Length = 3587

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 105  ttttatataaaagtatattgt 125
            |||||||||||||||||||||
Sbjct: 3048 ttttatataaaagtatattgt 3068
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>emb|AL592222.11| Mouse DNA sequence from clone RP23-366M19 on chromosome 11 Contains a
              ribosomal protein L13a (Rpl13a) pseudogene, the 5' end of a
              novel gene, the gene for peptidyl-tRNA hydrolase 2,
              mitochondrial precursor (PTH2), the Cltc gene for clathrin
              heavy polypeptide (Hc) and the 3' end of the Dhx40 gene for
              DEAH (Asp-Glu-Ala-His) box polypeptide 40, complete
              sequence
          Length = 160796

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 105    ttttatataaaagtatattgt 125
              |||||||||||||||||||||
Sbjct: 144311 ttttatataaaagtatattgt 144291
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>emb|CR859890.1| Pongo pygmaeus mRNA; cDNA DKFZp469B1516 (from clone DKFZp469B1516)
          Length = 3598

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 105  ttttatataaaagtatattgt 125
            |||||||||||||||||||||
Sbjct: 3066 ttttatataaaagtatattgt 3086
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>gb|AC091271.8| Homo sapiens chromosome 17, clone RP11-758H9, complete sequence
          Length = 135784

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 105    ttttatataaaagtatattgt 125
              |||||||||||||||||||||
Sbjct: 108669 ttttatataaaagtatattgt 108649
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>ref|XM_942276.1| PREDICTED: Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40,
            transcript variant 2 (DHX40), mRNA
          Length = 3816

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 105  ttttatataaaagtatattgt 125
            |||||||||||||||||||||
Sbjct: 3067 ttttatataaaagtatattgt 3087
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>ref|XM_945868.1| PREDICTED: Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40,
            transcript variant 3 (DHX40), mRNA
          Length = 3871

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 105  ttttatataaaagtatattgt 125
            |||||||||||||||||||||
Sbjct: 3122 ttttatataaaagtatattgt 3142
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>gb|DQ004278.1| Pseudomonas viridiflava strain RMX3.1b pectate lyase gene, complete
           cds
          Length = 1140

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 173 gaccatgtgaccttcactgac 193
           |||||||||||||||||||||
Sbjct: 544 gaccatgtgaccttcactgac 564
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>ref|NM_024612.3| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40 (DHX40), mRNA
          Length = 3656

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 105  ttttatataaaagtatattgt 125
            |||||||||||||||||||||
Sbjct: 3133 ttttatataaaagtatattgt 3153
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>gb|AF260270.1|AF260270 Homo sapiens PAD mRNA, complete cds
          Length = 3742

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 105  ttttatataaaagtatattgt 125
            |||||||||||||||||||||
Sbjct: 3201 ttttatataaaagtatattgt 3221
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>gb|AC040965.8| Homo sapiens chromosome 8, clone RP11-481K20, complete sequence
          Length = 189188

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 282  caatgtcgtaatgaaaatatc 302
            |||||||||||||||||||||
Sbjct: 7177 caatgtcgtaatgaaaatatc 7157
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>gb|AF461690.1| Homo sapiens DEAD-box containing helicase-like protein mRNA, complete
            cds
          Length = 3656

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 105  ttttatataaaagtatattgt 125
            |||||||||||||||||||||
Sbjct: 3133 ttttatataaaagtatattgt 3153
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>gb|AC068282.8| Homo sapiens BAC clone RP11-314L11 from 2, complete sequence
          Length = 205342

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 535   tgaacctcaaactccaacaca 555
             |||||||||||||||||||||
Sbjct: 44651 tgaacctcaaactccaacaca 44671
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>gb|AC105038.5| Homo sapiens chromosome 8, clone CTD-2351P9, complete sequence
          Length = 98334

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 282   caatgtcgtaatgaaaatatc 302
             |||||||||||||||||||||
Sbjct: 20660 caatgtcgtaatgaaaatatc 20680
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>dbj|AK025713.1| Homo sapiens cDNA: FLJ22060 fis, clone HEP10094
          Length = 2150

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 105  ttttatataaaagtatattgt 125
            |||||||||||||||||||||
Sbjct: 1605 ttttatataaaagtatattgt 1625
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>emb|CT573129.9| Zebrafish DNA sequence from clone CH73-266E21 in linkage group 13,
            complete sequence
          Length = 47008

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 113  aaaagtatattgtacaaacct 133
            |||||||||||||||||||||
Sbjct: 9189 aaaagtatattgtacaaacct 9169



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 113  aaaagtatattgtacaaacct 133
            |||||||||||||||||||||
Sbjct: 8888 aaaagtatattgtacaaacct 8868
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>gb|AC006270.1|AC006270 Homo sapiens chromosome 17, clone hRPK.556_O_9, complete sequence
          Length = 179929

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   cttttatataaaagtatattg 124
             |||||||||||||||||||||
Sbjct: 49248 cttttatataaaagtatattg 49268
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>ref|XM_466747.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1248

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 153  gacatggttcacacaggctagaccatgt 180
            ||||||||||||||| | ||||||||||
Sbjct: 1243 gacatggttcacacatgatagaccatgt 1216
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>ref|XM_648292.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (84.t00015)
            partial mRNA
          Length = 2979

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   gaaaacacttttatataaaa 116
            ||||||||||||||||||||
Sbjct: 1031 gaaaacacttttatataaaa 1012
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>gb|AC122726.21| Medicago truncatula clone mth2-23o24, complete sequence
          Length = 130999

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 537   aacctcaaactccaacacagccaa 560
             ||||||||| ||||||||||||||
Sbjct: 86574 aacctcaaaatccaacacagccaa 86597
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>emb|AL590611.7| Human DNA sequence from clone RP11-138K10 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 77888

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    aaaacacttttatataaaag 117
             ||||||||||||||||||||
Sbjct: 47074 aaaacacttttatataaaag 47093
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>emb|CR391999.9| Zebrafish DNA sequence from clone CH211-261L7 in linkage group 5,
              complete sequence
          Length = 176753

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    tataaaagtatattgtacaa 129
              ||||||||||||||||||||
Sbjct: 168324 tataaaagtatattgtacaa 168305
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>gb|AC010600.6| Homo sapiens chromosome 5 clone CTC-564D18, complete sequence
          Length = 173349

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    ataaaagtatattgtacaaa 130
              ||||||||||||||||||||
Sbjct: 139046 ataaaagtatattgtacaaa 139027
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>gb|AC020936.5| Homo sapiens chromosome 5 clone CTD-2291O8, complete sequence
          Length = 162884

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    ataaaagtatattgtacaaa 130
              ||||||||||||||||||||
Sbjct: 137578 ataaaagtatattgtacaaa 137597
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>emb|CR391943.6| Zebrafish DNA sequence from clone DKEY-15M21 in linkage group 9, complete
              sequence
          Length = 212667

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    tataaaagtatattgtacaa 129
              ||||||||||||||||||||
Sbjct: 200995 tataaaagtatattgtacaa 200976
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>gb|AC016558.6| Homo sapiens chromosome 5 clone CTC-420I8, complete sequence
          Length = 162884

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    ataaaagtatattgtacaaa 130
              ||||||||||||||||||||
Sbjct: 137578 ataaaagtatattgtacaaa 137597
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>gb|AF319521.1|AF319521 Homo sapiens ARG147 mRNA, complete cds
          Length = 2804

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 106  tttatataaaagtatattgt 125
            ||||||||||||||||||||
Sbjct: 2256 tttatataaaagtatattgt 2275
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>gb|AC079227.12| Homo sapiens BAC clone RP11-80B23 from 4, complete sequence
          Length = 181942

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     taagaaaacacttttatata 113
              ||||||||||||||||||||
Sbjct: 107771 taagaaaacacttttatata 107752
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>gb|AC079782.6| Homo sapiens BAC clone RP11-385J23 from 2, complete sequence
          Length = 85411

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    taagaaaacacttttatata 113
             ||||||||||||||||||||
Sbjct: 58995 taagaaaacacttttatata 59014
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>gb|AC008430.3|AC008430 Homo sapiens chromosome 5 clone CTC-310F2, complete sequence
          Length = 199912

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    ataaaagtatattgtacaaa 130
              ||||||||||||||||||||
Sbjct: 188406 ataaaagtatattgtacaaa 188387
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>dbj|AP004857.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1711_D06
          Length = 87613

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     caaacgttggacatataaat 27
             ||||||||||||||||||||
Sbjct: 10938 caaacgttggacatataaat 10919
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>gb|AC154321.2| Mus musculus BAC clone RP23-316B9 from 13, complete sequence
          Length = 177816

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   agtgacatggttcacacagg 169
             ||||||||||||||||||||
Sbjct: 58675 agtgacatggttcacacagg 58656
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>emb|BX649543.6| Zebrafish DNA sequence from clone DKEY-238K23 in linkage group 20,
            complete sequence
          Length = 42367

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 110  tataaaagtatattgtacaa 129
            ||||||||||||||||||||
Sbjct: 9020 tataaaagtatattgtacaa 9001
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>gb|AC151997.2| Mus musculus BAC clone RP23-138O21 from 8, complete sequence
          Length = 201556

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 609    gccagtgttaatgtgccaat 628
              ||||||||||||||||||||
Sbjct: 151349 gccagtgttaatgtgccaat 151330
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>emb|AL607142.16| Mouse DNA sequence from clone RP23-98J9 on chromosome 4, complete
              sequence
          Length = 188716

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 524    ccccaagatgatgaacctcaaactccaa 551
              ||||||||||  ||||||||||||||||
Sbjct: 166365 ccccaagatgcagaacctcaaactccaa 166338


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,116,383
Number of Sequences: 3902068
Number of extensions: 6116383
Number of successful extensions: 166404
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 166006
Number of HSP's gapped (non-prelim): 396
length of query: 642
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 619
effective length of database: 17,143,297,704
effective search space: 10611701278776
effective search space used: 10611701278776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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