Clone Information

BLAST Search Result

Clone Name	rbaal39i08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_189451.1\| Oryza sativa (japonica cultivar-group), predic...	375	e-100
2	dbj\|AK098940.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	375	e-100
3	dbj\|AK058329.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	311	2e-81
4	gb\|BT018388.1\| Zea mays clone EL01N0314F03.d mRNA sequence	190	4e-45
5	gb\|AY108447.1\| Zea mays PCO077050 mRNA sequence	151	4e-33
6	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	121	3e-24
7	dbj\|AP003277.2\| Oryza sativa (japonica cultivar-group) genomic D...	121	3e-24
8	gb\|AC144644.3\| Medicago truncatula clone mth2-14l3, complete seq...	44	0.64
9	gb\|CP000240.1\| Synechococcus sp. JA-2-3B'a(2-13), complete genome	44	0.64
10	gb\|AC009264.6\|AC009264 Homo sapiens chromosome 7 clone RP11-271F...	44	0.64
11	gb\|AC009332.6\|AC009332 Homo sapiens chromosome 7 clone RP11-348O...	44	0.64
12	gb\|BT016048.1\| Drosophila melanogaster LP19671 full insert cDNA	42	2.5
13	ref\|XM_534935.2\| PREDICTED: Canis familiaris similar to Cat eye ...	42	2.5
14	emb\|BX957269.5\| Zebrafish DNA sequence from clone CH211-12C22 in...	42	2.5
15	gb\|AY299389.1\| Orf virus Orf-11 A29L-like protein and A28L-like ...	42	2.5
16	emb\|AL939113.1\|SCO939113 Streptomyces coelicolor A3(2) complete ...	42	2.5
17	emb\|AL590155.9\| Zebrafish DNA sequence from clone RP71-79P20 in ...	42	2.5
18	emb\|BX005430.14\| Zebrafish DNA sequence from clone DKEY-19E4 in ...	42	2.5
19	ref\|NM_143000.1\| Drosophila melanogaster CG17782-RA (CG17782), mRNA	42	2.5
20	ref\|XM_932503.1\| PREDICTED: Homo sapiens cullin-associated and n...	42	2.5
21	ref\|XM_944849.1\| PREDICTED: Homo sapiens cullin-associated and n...	42	2.5
22	gb\|AF254822.1\|AF254822 Homo sapiens SMARCA4 isoform (SMARCA4) ge...	42	2.5
23	gb\|AC008204.9\|AC008204 Drosophila melanogaster, chromosome 3R, r...	42	2.5
24	gb\|AC154226.3\| Mus musculus BAC clone RP24-353J14 from chromosom...	42	2.5
25	dbj\|AB044334.2\| Mus musculus CAST gene for calpastatin type I, I...	42	2.5
26	gb\|AC157891.3\| Medicago truncatula chromosome 7 BAC clone mte1-1...	42	2.5
27	gb\|AC154780.2\| Mus musculus BAC clone RP24-462E4 from 13, comple...	42	2.5
28	emb\|AL954725.9\| Zebrafish DNA sequence from clone DKEY-11H11 in ...	42	2.5
29	emb\|CR847530.19\| Zebrafish DNA sequence from clone DKEY-14I17 in...	42	2.5
30	gb\|AE003747.3\| Drosophila melanogaster chromosome 3R, section 85...	42	2.5
31	gb\|AC006127.1\|AC006127 Homo sapiens chromosome 19, cosmid F24827...	42	2.5
32	gb\|AC109258.12\| Mus musculus chromosome 18, clone RP23-364K17, c...	42	2.5
33	gb\|AC145568.4\| Mus musculus BAC clone RP24-473H20 from 6, comple...	42	2.5
34	gb\|AC154355.1\| Mus musculus BAC clone RP23-220N4 from 13, comple...	42	2.5
35	emb\|CT010470.9\| Mouse DNA sequence from clone RP23-313D12 on chr...	42	2.5
36	gb\|AC034198.7\| Homo sapiens chromosome 3 clone RP11-767C1 map 3p...	42	2.5
37	gb\|AC018836.5\| Homo sapiens chromosome 3 clone RP11-588P9 map 3p...	42	2.5

>ref|NM_189451.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 984

 Score =  375 bits (189), Expect = e-100
 Identities = 392/460 (85%)
 Strand = Plus / Minus

                                                                       
Query: 263 tgtactcctggctccgcgaccactcgtccatctcccgggctcgcatcacgggcaaagggt 322
           |||||||  ||||||  ||||||||||| ||||| |||||||||||||| |||| ||| |
Sbjct: 928 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 869

                                                                       
Query: 323 gcgacagctccctcgtctgagcgttccggatgtaccacccgaccgggttcgacgatgcct 382
           |||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||  || |
Sbjct: 868 gcgacagctctctcgtctgagcgttccggatgtaccagccgacggggtttgacgcagctt 809

                                                                       
Query: 383 tgtcgtacgaccgggcttgctccaggaaggcgtccacgttcagctggtccgacagcgaag 442
           ||||||| || || |||||||||||||||||||||||||||||||||||||  ||||| |
Sbjct: 808 tgtcgtaggagcgagcttgctccaggaaggcgtccacgttcagctggtccgcaagcgacg 749

                                                                       
Query: 443 ggcatcctcccgccagcttcatcaggaccgagatgacaaccttgggatcttttactacga 502
           |||| ||||| ||||| |||||||| || || || ||||||||||| || |  ||||| |
Sbjct: 748 ggcaccctccggccagtttcatcagcacagatatcacaaccttggggtcctgcactacaa 689

                                                                       
Query: 503 gaagagccgccctgtcgcaagtcagctccgcggcgcgcagccacctgaacagctgttctt 562
           |||||||||| |  || ||||||||||| || || || ||||||||| | ||||| ||||
Sbjct: 688 gaagagccgctcgatcacaagtcagctctgcagcccggagccacctgtagagctgctctt 629

                                                                       
Query: 563 caaggaacccagcaaccataccgaaaccagggacagtatatgcccccattgttagtatgt 622
           | || |||||||||||||| || || ||||||||||  ||||| |||||||| |||||||
Sbjct: 628 ccagaaacccagcaaccatgccaaatccagggacagagtatgctcccattgtcagtatgt 569

                                                                       
Query: 623 tggcaaaggtgagccagacgccatgatcgcacttgaggtgacccagctcatgtgccaaaa 682
           ||||||| || ||||| |||||||| || ||||||||||| ||||| ||||| ||||| |
Sbjct: 568 tggcaaatgtaagccacacgccatggtcacacttgaggtgtcccagttcatgagccaaca 509

                                                   
Query: 683 cagcctgcaattcctttctggtgagcagctncacgaggct 722
           ||||||||| ||| ||||| |||||||||| ||| |||||
Sbjct: 508 cagcctgcagttcttttctagtgagcagctccacaaggct 469

to top

>dbj|AK098940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D06, full
           insert sequence
          Length = 1250

 Score =  375 bits (189), Expect = e-100
 Identities = 392/460 (85%)
 Strand = Plus / Minus

                                                                       
Query: 263 tgtactcctggctccgcgaccactcgtccatctcccgggctcgcatcacgggcaaagggt 322
           |||||||  ||||||  ||||||||||| ||||| |||||||||||||| |||| ||| |
Sbjct: 982 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 923

                                                                       
Query: 323 gcgacagctccctcgtctgagcgttccggatgtaccacccgaccgggttcgacgatgcct 382
           |||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||  || |
Sbjct: 922 gcgacagctctctcgtctgagcgttccggatgtaccagccgacggggtttgacgcagctt 863

                                                                       
Query: 383 tgtcgtacgaccgggcttgctccaggaaggcgtccacgttcagctggtccgacagcgaag 442
           ||||||| || || |||||||||||||||||||||||||||||||||||||  ||||| |
Sbjct: 862 tgtcgtaggagcgagcttgctccaggaaggcgtccacgttcagctggtccgcaagcgacg 803

                                                                       
Query: 443 ggcatcctcccgccagcttcatcaggaccgagatgacaaccttgggatcttttactacga 502
           |||| ||||| ||||| |||||||| || || || ||||||||||| || |  ||||| |
Sbjct: 802 ggcaccctccggccagtttcatcagcacagatatcacaaccttggggtcctgcactacaa 743

                                                                       
Query: 503 gaagagccgccctgtcgcaagtcagctccgcggcgcgcagccacctgaacagctgttctt 562
           |||||||||| |  || ||||||||||| || || || ||||||||| | ||||| ||||
Sbjct: 742 gaagagccgctcgatcacaagtcagctctgcagcccggagccacctgtagagctgctctt 683

                                                                       
Query: 563 caaggaacccagcaaccataccgaaaccagggacagtatatgcccccattgttagtatgt 622
           | || |||||||||||||| || || ||||||||||  ||||| |||||||| |||||||
Sbjct: 682 ccagaaacccagcaaccatgccaaatccagggacagagtatgctcccattgtcagtatgt 623

                                                                       
Query: 623 tggcaaaggtgagccagacgccatgatcgcacttgaggtgacccagctcatgtgccaaaa 682
           ||||||| || ||||| |||||||| || ||||||||||| ||||| ||||| ||||| |
Sbjct: 622 tggcaaatgtaagccacacgccatggtcacacttgaggtgtcccagttcatgagccaaca 563

                                                   
Query: 683 cagcctgcaattcctttctggtgagcagctncacgaggct 722
           ||||||||| ||| ||||| |||||||||| ||| |||||
Sbjct: 562 cagcctgcagttcttttctagtgagcagctccacaaggct 523

to top

>dbj|AK058329.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-C02, full
           insert sequence
          Length = 1127

 Score =  311 bits (157), Expect = 2e-81
 Identities = 383/460 (83%), Gaps = 9/460 (1%)
 Strand = Plus / Minus

                                                                       
Query: 263 tgtactcctggctccgcgaccactcgtccatctcccgggctcgcatcacgggcaaagggt 322
           |||||||  ||||||  ||||||||||| ||||| |||||||||||||| |||| ||| |
Sbjct: 953 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 894

                                                                       
Query: 323 gcgacagctccctcgtctgagcgttccggatgtaccacccgaccgggttcgacgatgcct 382
           |||||||||| |||||||||||||||| |         ||||| ||||| ||||  || |
Sbjct: 893 gcgacagctctctcgtctgagcgttccag---------ccgacggggtttgacgcagctt 843

                                                                       
Query: 383 tgtcgtacgaccgggcttgctccaggaaggcgtccacgttcagctggtccgacagcgaag 442
           ||||||| || || |||||||||||||||||||||||||||||||||||||  ||||| |
Sbjct: 842 tgtcgtaggagcgagcttgctccaggaaggcgtccacgttcagctggtccgcaagcgacg 783

                                                                       
Query: 443 ggcatcctcccgccagcttcatcaggaccgagatgacaaccttgggatcttttactacga 502
           |||| ||||| ||||| |||||||| || || || ||||||||||| || |  ||||| |
Sbjct: 782 ggcaccctccggccagtttcatcagcacagatatcacaaccttggggtcctgcactacaa 723

                                                                       
Query: 503 gaagagccgccctgtcgcaagtcagctccgcggcgcgcagccacctgaacagctgttctt 562
           |||||||||| |  || ||||||||||| || || || ||||||||| | ||||| ||||
Sbjct: 722 gaagagccgctcgatcacaagtcagctctgcagcccggagccacctgtagagctgctctt 663

                                                                       
Query: 563 caaggaacccagcaaccataccgaaaccagggacagtatatgcccccattgttagtatgt 622
           | || |||||||||||||| || || ||||||||||  ||||| |||||||| |||||||
Sbjct: 662 ccagaaacccagcaaccatgccaaatccagggacagagtatgctcccattgtcagtatgt 603

                                                                       
Query: 623 tggcaaaggtgagccagacgccatgatcgcacttgaggtgacccagctcatgtgccaaaa 682
           ||||||| || ||||| |||||||| || ||||||||||| ||||| ||||| ||||| |
Sbjct: 602 tggcaaatgtaagccacacgccatggtcacacttgaggtgtcccagttcatgagccaaca 543

                                                   
Query: 683 cagcctgcaattcctttctggtgagcagctncacgaggct 722
           ||||||||| ||| ||||| |||||||||| ||| |||||
Sbjct: 542 cagcctgcagttcttttctagtgagcagctccacaaggct 503

to top

>gb|BT018388.1| Zea mays clone EL01N0314F03.d mRNA sequence
          Length = 1468

 Score =  190 bits (96), Expect = 4e-45
 Identities = 194/227 (85%)
 Strand = Plus / Minus

                                                                       
Query: 502 agaagagccgccctgtcgcaagtcagctccgcggcgcgcagccacctgaacagctgttct 561
           |||||||| |||||||| ||||||||||| || |   | ||||| ||  | ||||| |||
Sbjct: 817 agaagagctgccctgtcacaagtcagctctgcagatggtagccatctatatagctgctct 758

                                                                       
Query: 562 tcaaggaacccagcaaccataccgaaaccagggacagtatatgcccccattgttagtatg 621
           || || || ||||||||||| ||||||||||||||||| ||||| |||||||| ||||| 
Sbjct: 757 tccagaaagccagcaaccatgccgaaaccagggacagtgtatgctcccattgtgagtata 698

                                                                       
Query: 622 ttggcaaaggtgagccagacgccatgatcgcacttgaggtgacccagctcatgtgccaaa 681
           |||||||| |||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 697 ttggcaaaagtgagccaaacaccatgatcgcacttgaggtgacccagctcatgagccaaa 638

                                                          
Query: 682 acagcctgcaattcctttctggtgagcagctncacgaggctcgtgtg 728
           ||||||||||||||| ||   || ||||||| ||| ||||| |||||
Sbjct: 637 acagcctgcaattcccttggagtaagcagctccacaaggcttgtgtg 591

to top

>gb|AY108447.1| Zea mays PCO077050 mRNA sequence
          Length = 636

 Score =  151 bits (76), Expect = 4e-33
 Identities = 205/248 (82%)
 Strand = Plus / Minus

                                                                       
Query: 237 ctgaaacatcttgtgcaacagggtcctgtactcctggctccgcgaccactcgtccatctc 296
           ||||||||| || ||||  | |||| ||||||||||||| |  |||||||| || |||||
Sbjct: 281 ctgaaacattttttgcattacggtcttgtactcctggcttcttgaccactcatcgatctc 222

                                                                       
Query: 297 ccgggctcgcatcacgggcaaagggtgcgacagctccctcgtctgagcgttccggatgta 356
            | |||||||||||| ||||||||||| || ||||| || || || || |||||||||||
Sbjct: 221 tctggctcgcatcacaggcaaagggtgtgaaagctctctggtttgtgcattccggatgta 162

                                                                       
Query: 357 ccacccgaccgggttcgacgatgccttgtcgtacgaccgggcttgctccaggaaggcgtc 416
           |||||| || |||||||| |  |||||||||||||| || ||||||||||||||||| ||
Sbjct: 161 ccacccaactgggttcgatgcagccttgtcgtacgaacgagcttgctccaggaaggcatc 102

                                                                       
Query: 417 cacgttcagctggtccgacagcgaagggcatcctcccgccagcttcatcaggaccgagat 476
           ||| || |||| ||| |  || || ||||||||||| ||||  |||||||| || |||||
Sbjct: 101 cacatttagcttgtcggcaagagatgggcatcctccggccaatttcatcagaacagagat 42

                   
Query: 477 gacaacct 484
           ||| ||||
Sbjct: 41  gactacct 34

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  121 bits (61), Expect = 3e-24
 Identities = 118/137 (86%)
 Strand = Plus / Plus

                                                                            
Query: 348      ccggatgtaccacccgaccgggttcgacgatgccttgtcgtacgaccgggcttgctccag 407
                |||||||||||| ||||| ||||| ||||  || |||||||| || || |||||||||||
Sbjct: 42818986 ccggatgtaccagccgacggggtttgacgcagctttgtcgtaggagcgagcttgctccag 42819045

                                                                            
Query: 408      gaaggcgtccacgttcagctggtccgacagcgaagggcatcctcccgccagcttcatcag 467
                ||||||||||||||||||||||||||  ||||| ||||| ||||| ||||| ||||||||
Sbjct: 42819046 gaaggcgtccacgttcagctggtccgcaagcgacgggcaccctccggccagtttcatcag 42819105

                                 
Query: 468      gaccgagatgacaacct 484
                 || || || |||||||
Sbjct: 42819106 cacagatatcacaacct 42819122



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 88/101 (87%)
 Strand = Plus / Plus

                                                                            
Query: 588      accagggacagtatatgcccccattgttagtatgttggcaaaggtgagccagacgccatg 647
                |||||||||||  ||||| |||||||| |||||||||||||| || ||||| ||||||||
Sbjct: 42819411 accagggacagagtatgctcccattgtcagtatgttggcaaatgtaagccacacgccatg 42819470

                                                         
Query: 648      atcgcacttgaggtgacccagctcatgtgccaaaacagcct 688
                 || ||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 42819471 gtcacacttgaggtgtcccagttcatgagccaacacagcct 42819511



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                            
Query: 263      tgtactcctggctccgcgaccactcgtccatctcccgggctcgcatcacgggcaaagggt 322
                |||||||  ||||||  ||||||||||| ||||| |||||||||||||| |||| ||| |
Sbjct: 42818794 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 42818853

                                           
Query: 323      gcgacagctccctcgtctgagcgttcc 349
                |||||||||| ||||||||||||||||
Sbjct: 42818854 gcgacagctctctcgtctgagcgttcc 42818880



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                            
Query: 496      actacgagaagagccgccctgtcgcaagtcagctccgcggcgcgcagccacctgaacagc 555
                ||||| ||||||||||| |  || ||||||||||| || || || ||||||||| | |||
Sbjct: 42819233 actacaagaagagccgctcgatcacaagtcagctctgcagcccggagccacctgtagagc 42819292

                                          
Query: 556      tgttcttcaaggaacccagcaaccat 581
                || ||||| || ||||||||||||||
Sbjct: 42819293 tgctcttccagaaacccagcaaccat 42819318

to top

>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0518C01
          Length = 173555

 Score =  121 bits (61), Expect = 3e-24
 Identities = 118/137 (86%)
 Strand = Plus / Plus

                                                                         
Query: 348   ccggatgtaccacccgaccgggttcgacgatgccttgtcgtacgaccgggcttgctccag 407
             |||||||||||| ||||| ||||| ||||  || |||||||| || || |||||||||||
Sbjct: 12720 ccggatgtaccagccgacggggtttgacgcagctttgtcgtaggagcgagcttgctccag 12779

                                                                         
Query: 408   gaaggcgtccacgttcagctggtccgacagcgaagggcatcctcccgccagcttcatcag 467
             ||||||||||||||||||||||||||  ||||| ||||| ||||| ||||| ||||||||
Sbjct: 12780 gaaggcgtccacgttcagctggtccgcaagcgacgggcaccctccggccagtttcatcag 12839

                              
Query: 468   gaccgagatgacaacct 484
              || || || |||||||
Sbjct: 12840 cacagatatcacaacct 12856



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 88/101 (87%)
 Strand = Plus / Plus

                                                                         
Query: 588   accagggacagtatatgcccccattgttagtatgttggcaaaggtgagccagacgccatg 647
             |||||||||||  ||||| |||||||| |||||||||||||| || ||||| ||||||||
Sbjct: 13145 accagggacagagtatgctcccattgtcagtatgttggcaaatgtaagccacacgccatg 13204

                                                      
Query: 648   atcgcacttgaggtgacccagctcatgtgccaaaacagcct 688
              || ||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 13205 gtcacacttgaggtgtcccagttcatgagccaacacagcct 13245



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                         
Query: 263   tgtactcctggctccgcgaccactcgtccatctcccgggctcgcatcacgggcaaagggt 322
             |||||||  ||||||  ||||||||||| ||||| |||||||||||||| |||| ||| |
Sbjct: 12528 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 12587

                                        
Query: 323   gcgacagctccctcgtctgagcgttcc 349
             |||||||||| ||||||||||||||||
Sbjct: 12588 gcgacagctctctcgtctgagcgttcc 12614



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                         
Query: 496   actacgagaagagccgccctgtcgcaagtcagctccgcggcgcgcagccacctgaacagc 555
             ||||| ||||||||||| |  || ||||||||||| || || || ||||||||| | |||
Sbjct: 12967 actacaagaagagccgctcgatcacaagtcagctctgcagcccggagccacctgtagagc 13026

                                       
Query: 556   tgttcttcaaggaacccagcaaccat 581
             || ||||| || ||||||||||||||
Sbjct: 13027 tgctcttccagaaacccagcaaccat 13052

to top

>gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete sequence
          Length = 117645

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 186    tgtaattcagttcatttcattc 207
              ||||||||||||||||||||||
Sbjct: 110332 tgtaattcagttcatttcattc 110311

to top

>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 394     cgggcttgctccaggaaggcgtccacgttcagct 427
               ||||| |||||||  |||||||||||||||||||
Sbjct: 2261828 cgggcctgctccaaaaaggcgtccacgttcagct 2261795

to top

>gb|AC009264.6|AC009264 Homo sapiens chromosome 7 clone RP11-271F4, complete sequence
          Length = 164824

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 196   ttcatttcattcatacacaggc 217
             ||||||||||||||||||||||
Sbjct: 32915 ttcatttcattcatacacaggc 32936

to top

>gb|AC009332.6|AC009332 Homo sapiens chromosome 7 clone RP11-348O21, complete sequence
          Length = 148471

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 196   ttcatttcattcatacacaggc 217
             ||||||||||||||||||||||
Sbjct: 55900 ttcatttcattcatacacaggc 55921

to top

>gb|BT016048.1| Drosophila melanogaster LP19671 full insert cDNA
          Length = 1504

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 144 accaccaccagcgcacccacc 164
           |||||||||||||||||||||
Sbjct: 970 accaccaccagcgcacccacc 990

to top

>ref|XM_534935.2| PREDICTED: Canis familiaris similar to Cat eye syndrome critical
            region protein 2 (LOC477738), mRNA
          Length = 4445

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 63   ccagtcacatgtaccgatcat 83
            |||||||||||||||||||||
Sbjct: 2048 ccagtcacatgtaccgatcat 2068

to top

>emb|BX957269.5| Zebrafish DNA sequence from clone CH211-12C22 in linkage group 6,
             complete sequence
          Length = 174814

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 188   taattcagttcatttcattca 208
             |||||||||||||||||||||
Sbjct: 77639 taattcagttcatttcattca 77659

to top

>gb|AY299389.1| Orf virus Orf-11 A29L-like protein and A28L-like protein mRNA,
           partial cds
          Length = 1381

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 524 tcagctccgcggcgcgcagcc 544
           |||||||||||||||||||||
Sbjct: 924 tcagctccgcggcgcgcagcc 904

to top

>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 400   tgctccaggaaggcgtccacgttca 424
             ||||||||||| |||||||||||||
Sbjct: 64037 tgctccaggaacgcgtccacgttca 64013

to top

>emb|AL590155.9| Zebrafish DNA sequence from clone RP71-79P20 in linkage group 23
             Contains part of the putative novel DIRS-1 like
             retrotransposon DIRSDR2 (DIRS-1 Danio rerio 2), the 5' end
             of a novel gene and four CpG islands, complete sequence
          Length = 161731

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   taattcagttcatttcattca 208
             |||||||||||||||||||||
Sbjct: 95302 taattcagttcatttcattca 95282

to top

>emb|BX005430.14| Zebrafish DNA sequence from clone DKEY-19E4 in linkage group 6, complete
              sequence
          Length = 209866

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 188    taattcagttcatttcattca 208
              |||||||||||||||||||||
Sbjct: 155113 taattcagttcatttcattca 155093

to top

>ref|NM_143000.1| Drosophila melanogaster CG17782-RA (CG17782), mRNA
          Length = 1440

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 144 accaccaccagcgcacccacc 164
           |||||||||||||||||||||
Sbjct: 943 accaccaccagcgcacccacc 963

to top

>ref|XM_932503.1| PREDICTED: Homo sapiens cullin-associated and
           neddylation-dissociated 2 (putative), transcript variant
           2 (CAND2), mRNA
          Length = 759

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 527 gctccgcggcgcgcagccacc 547
           |||||||||||||||||||||
Sbjct: 23  gctccgcggcgcgcagccacc 43

to top

>ref|XM_944849.1| PREDICTED: Homo sapiens cullin-associated and
           neddylation-dissociated 2 (putative), transcript variant
           4 (CAND2), mRNA
          Length = 759

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 527 gctccgcggcgcgcagccacc 547
           |||||||||||||||||||||
Sbjct: 23  gctccgcggcgcgcagccacc 43

to top

>gb|AF254822.1|AF254822 Homo sapiens SMARCA4 isoform (SMARCA4) gene, complete cds,
             alternatively spliced
          Length = 102910

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 247   ttgtgcaacagggtcctgtactcctggct 275
             ||||| ||||||||||||||| |||||||
Sbjct: 67081 ttgtggaacagggtcctgtacacctggct 67109

to top

>gb|AC008204.9|AC008204 Drosophila melanogaster, chromosome 3R, region 95E-95F, BAC clone
              BACR04E17, complete sequence
          Length = 199016

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 144    accaccaccagcgcacccacc 164
              |||||||||||||||||||||
Sbjct: 120897 accaccaccagcgcacccacc 120877

to top

>gb|AC154226.3| Mus musculus BAC clone RP24-353J14 from chromosome 13, complete
             sequence
          Length = 196991

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 682   acagcctgcaattcctttctg 702
             |||||||||||||||||||||
Sbjct: 47633 acagcctgcaattcctttctg 47613

to top

>dbj|AB044334.2| Mus musculus CAST gene for calpastatin type I, II, III, IV-L, IV-S,
             complete cds
          Length = 34223

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                          
Query: 181   tctactgtaattcagttcat-ttcattca 208
             |||||||||||||||||||| ||||||||
Sbjct: 27141 tctactgtaattcagttcatattcattca 27113

to top

>gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1i2, complete sequence
          Length = 154095

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 58    taattccagtcacatgtaccg 78
             |||||||||||||||||||||
Sbjct: 30380 taattccagtcacatgtaccg 30360

to top

>gb|AC154780.2| Mus musculus BAC clone RP24-462E4 from 13, complete sequence
          Length = 161998

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                          
Query: 181   tctactgtaattcagttcat-ttcattca 208
             |||||||||||||||||||| ||||||||
Sbjct: 50148 tctactgtaattcagttcatattcattca 50176

to top

>emb|AL954725.9| Zebrafish DNA sequence from clone DKEY-11H11 in linkage group 23,
             complete sequence
          Length = 219971

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   taattcagttcatttcattca 208
             |||||||||||||||||||||
Sbjct: 85223 taattcagttcatttcattca 85203

to top

>emb|CR847530.19| Zebrafish DNA sequence from clone DKEY-14I17 in linkage group 20,
             complete sequence
          Length = 144640

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   taattcagttcatttcattca 208
             |||||||||||||||||||||
Sbjct: 82558 taattcagttcatttcattca 82538

to top

>gb|AE003747.3| Drosophila melanogaster chromosome 3R, section 85 of 118 of the complete
              sequence
          Length = 206741

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 144    accaccaccagcgcacccacc 164
              |||||||||||||||||||||
Sbjct: 121153 accaccaccagcgcacccacc 121133

to top

>gb|AC006127.1|AC006127 Homo sapiens chromosome 19, cosmid F24827, complete sequence
          Length = 36814

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 247   ttgtgcaacagggtcctgtactcctggct 275
             ||||| ||||||||||||||| |||||||
Sbjct: 11431 ttgtggaacagggtcctgtacacctggct 11459

to top

>gb|AC109258.12| Mus musculus chromosome 18, clone RP23-364K17, complete sequence
          Length = 232399

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 562   tcaaggaacccagcaaccata 582
             |||||||||||||||||||||
Sbjct: 64690 tcaaggaacccagcaaccata 64670

to top

>gb|AC145568.4| Mus musculus BAC clone RP24-473H20 from 6, complete sequence
          Length = 201210

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   tacacaggcaggcaggacaga 229
             |||||||||||||||||||||
Sbjct: 99768 tacacaggcaggcaggacaga 99748

to top

>gb|AC154355.1| Mus musculus BAC clone RP23-220N4 from 13, complete sequence
          Length = 168447

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 682   acagcctgcaattcctttctg 702
             |||||||||||||||||||||
Sbjct: 90998 acagcctgcaattcctttctg 90978

to top

>emb|CT010470.9| Mouse DNA sequence from clone RP23-313D12 on chromosome 13, complete
              sequence
          Length = 199355

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 682    acagcctgcaattcctttctg 702
              |||||||||||||||||||||
Sbjct: 149454 acagcctgcaattcctttctg 149434

to top

>gb|AC034198.7| Homo sapiens chromosome 3 clone RP11-767C1 map 3p, complete sequence
          Length = 169005

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 527   gctccgcggcgcgcagccacc 547
             |||||||||||||||||||||
Sbjct: 84651 gctccgcggcgcgcagccacc 84631

to top

>gb|AC018836.5| Homo sapiens chromosome 3 clone RP11-588P9 map 3p, complete sequence
          Length = 184716

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 527    gctccgcggcgcgcagccacc 547
              |||||||||||||||||||||
Sbjct: 163293 gctccgcggcgcgcagccacc 163273


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,969,171
Number of Sequences: 3902068
Number of extensions: 4969171
Number of successful extensions: 103937
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 103830
Number of HSP's gapped (non-prelim): 109
length of query: 731
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 708
effective length of database: 17,143,297,704
effective search space: 12137454774432
effective search space used: 12137454774432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result