ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal39h18 |
|---|---|
| Clone Library Name | barley_pub |
>Y464_SYNP7 (Q8GMT0) UPF0133 protein Synpcc7942_0464| Length = 113 Score = 57.8 bits (138), Expect = 1e-08 Identities = 28/55 (50%), Positives = 37/55 (67%) Frame = -1 Query: 458 GNQQPINVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMP 294 GNQ+P+ EI A+ GAE +SELV A KDA+Q+S AMKE+M L +G+P Sbjct: 57 GNQEPLRAEIAPEALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111
>Y723_SYNEL (Q8DKX6) UPF0133 protein tlr0723| Length = 115 Score = 52.0 bits (123), Expect = 7e-07 Identities = 27/59 (45%), Positives = 39/59 (66%) Frame = -1 Query: 458 GNQQPINVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAGLG 282 G Q+P VEI+ + GAE +S+LV A +DA+Q+S M+ERM +L S+ +P GLG Sbjct: 58 GTQEPRRVEISPDLLSEGAEVLSDLVTAAMRDAYQKSTATMRERMEELTGSLNVP-GLG 115
>Y5067_ANASP (Q8YM73) UPF0133 protein Alr5067| Length = 115 Score = 52.0 bits (123), Expect = 7e-07 Identities = 25/55 (45%), Positives = 36/55 (65%) Frame = -1 Query: 458 GNQQPINVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMP 294 GNQ+P VEI+ A+ GA+ +S+LV A KDA+ +S M+ERM DL + +P Sbjct: 59 GNQEPKRVEISPDALAQGADLLSDLVTAAMKDAYIKSTATMRERMEDLTSGLELP 113
>Y1847_SYNY3 (P73057) UPF0133 protein slr1847| Length = 114 Score = 50.8 bits (120), Expect = 2e-06 Identities = 22/55 (40%), Positives = 36/55 (65%) Frame = -1 Query: 458 GNQQPINVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMP 294 GNQ+P+++EI +A+E GAE +S V EA K A+ S + M+ +M +L + +P Sbjct: 58 GNQEPLSIEIDPSALEKGAEGLSASVTEAMKAAYAESTETMRSKMEELTSGLNLP 112
>Y3498_GLOVI (Q7NFM6) UPF0133 protein glr3498| Length = 111 Score = 48.1 bits (113), Expect = 1e-05 Identities = 23/59 (38%), Positives = 34/59 (57%) Frame = -1 Query: 458 GNQQPINVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAGLG 282 GNQ+P V I + E V +L+ AYKDA+ +S + MK +M +L + +P GLG Sbjct: 52 GNQEPTGVTIDPQLLSESKEVVEDLLLTAYKDAYTKSAETMKAKMQELTGGMELPPGLG 110
>Y020_PROMP (Q7V3Q0) UPF0133 protein PMM0020| Length = 116 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/54 (38%), Positives = 30/54 (55%) Frame = -1 Query: 458 GNQQPINVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGM 297 GNQ P+ VE+ E E++ + + EA K AH+ S MKERM DL + + Sbjct: 53 GNQLPLRVEVNENISTANKEEIEKNILEAIKKAHESSTTTMKERMNDLTGGLNL 106
>Y020_PROMA (Q7VEJ3) UPF0133 protein Pro_0020| Length = 115 Score = 38.9 bits (89), Expect = 0.006 Identities = 19/54 (35%), Positives = 30/54 (55%) Frame = -1 Query: 458 GNQQPINVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGM 297 GNQQPI V++ + ++ E V + EA + AH+ S MK RM +L + + Sbjct: 53 GNQQPIRVKVENSILKEEEEIVEAAILEAMQKAHEISTSNMKSRMQELTGGLNL 106
>Y2178_VIBPA (Q87MQ3) UPF0133 protein VP2178| Length = 109 Score = 37.4 bits (85), Expect = 0.018 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = -1 Query: 458 GNQQPINVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAGL 285 G+ V+I E+ ME E + +L+ A+ DA +R + KE+MA + + +P G+ Sbjct: 48 GSHSVRRVDIDESLMEDDKEMLEDLIAAAFNDAARRVEETQKEKMASVTGGMQLPPGM 105
>Y326_HAEDU (Q7VNZ1) UPF0133 protein HD_0326| Length = 109 Score = 37.0 bits (84), Expect = 0.024 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = -1 Query: 437 VEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAGL 285 +EI + ME E V +LV A+ DA +R+ KE+MA + + +P G+ Sbjct: 55 IEIDASLMEDDKEMVEDLVAAAFNDAVRRAEDLQKEKMASVTSGMQLPPGM 105
>Y1055_VIBCH (Q9KT50) UPF0133 protein VC1055| Length = 109 Score = 37.0 bits (84), Expect = 0.024 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = -1 Query: 458 GNQQPINVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAGL 285 G+ V I E+ ME E + +L+ A+ DA +R + KE+MA + + +P G+ Sbjct: 48 GSHSVRRVNIDESLMEDDKEMLEDLIAAAFNDAARRIEETQKEKMASITGGMQLPPGM 105
>Y2410_VIBVY (Q7MIV3) UPF0133 protein VV2410| Length = 109 Score = 36.2 bits (82), Expect = 0.041 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = -1 Query: 458 GNQQPINVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAGL 285 G+ V I E+ ME E + +L+ A+ DA +R + KE+MA + + +P G+ Sbjct: 48 GSHSVRRVNIDESLMEDDKEMLEDLIAAAFNDAARRVEETQKEKMAAITGGMQLPPGM 105
>Y2004_VIBVU (Q8DB23) UPF0133 protein VV1_2004| Length = 109 Score = 36.2 bits (82), Expect = 0.041 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = -1 Query: 458 GNQQPINVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAGL 285 G+ V I E+ ME E + +L+ A+ DA +R + KE+MA + + +P G+ Sbjct: 48 GSHSVRRVNIDESLMEDDKEMLEDLIAAAFNDAARRVEETQKEKMAAITGGMQLPPGM 105
>Y027_SYNPX (Q7UA73) UPF0133 protein SYNW0027| Length = 113 Score = 35.8 bits (81), Expect = 0.054 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = -1 Query: 458 GNQQPINVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGM 297 GNQQP+ V + + G E EA + A+++S MK RM +L + + Sbjct: 53 GNQQPLRVRLDPELLSAGQETCEAATLEALQAAYEQSTATMKGRMEELTGGLNL 106
>Y3840_PHOLL (Q7N0P1) UPF0133 protein plu3840| Length = 109 Score = 35.8 bits (81), Expect = 0.054 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = -1 Query: 437 VEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAG 288 VEI + ME E + +L+ A+ DA +R + KE+MA ++ + +P G Sbjct: 55 VEIDPSLMEDDKEMLEDLIAAAFNDAARRIEETQKEKMAGISSGMQLPPG 104
>YBAB_SHIFL (P0A8C0) UPF0133 protein ybaB| Length = 109 Score = 35.0 bits (79), Expect = 0.092 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = -1 Query: 437 VEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAG 288 VEI + +E E + +LV A+ DA +R + KE+MA ++ + +P G Sbjct: 55 VEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPG 104
>YBAB_SALTY (P0A8B8) UPF0133 protein ybaB| Length = 109 Score = 35.0 bits (79), Expect = 0.092 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = -1 Query: 437 VEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAG 288 VEI + +E E + +LV A+ DA +R + KE+MA ++ + +P G Sbjct: 55 VEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPG 104
>YBAB_SALTI (P0A8B9) UPF0133 protein ybaB| Length = 109 Score = 35.0 bits (79), Expect = 0.092 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = -1 Query: 437 VEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAG 288 VEI + +E E + +LV A+ DA +R + KE+MA ++ + +P G Sbjct: 55 VEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPG 104
>YBAB_ECOLI (P0A8B5) UPF0133 protein ybaB| Length = 109 Score = 35.0 bits (79), Expect = 0.092 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = -1 Query: 437 VEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAG 288 VEI + +E E + +LV A+ DA +R + KE+MA ++ + +P G Sbjct: 55 VEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPG 104
>YBAB_ECOL6 (P0A8B6) UPF0133 protein ybaB| Length = 109 Score = 35.0 bits (79), Expect = 0.092 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = -1 Query: 437 VEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAG 288 VEI + +E E + +LV A+ DA +R + KE+MA ++ + +P G Sbjct: 55 VEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPG 104
>YBAB_ECO57 (P0A8B7) UPF0133 protein ybaB| Length = 109 Score = 35.0 bits (79), Expect = 0.092 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = -1 Query: 437 VEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAG 288 VEI + +E E + +LV A+ DA +R + KE+MA ++ + +P G Sbjct: 55 VEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPG 104
>Y205_PASMU (P57825) UPF0133 protein PM0205| Length = 109 Score = 35.0 bits (79), Expect = 0.092 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = -1 Query: 437 VEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAG 288 VEI + ME + + +L+ A+ DA +R+ + KE+MA + + +P G Sbjct: 55 VEIDPSLMEDDKDMLEDLIAAAFNDAVRRAEELQKEKMASVTAGMALPPG 104
>Y025_PROMM (Q7V9C5) UPF0133 protein PMT0025| Length = 113 Score = 35.0 bits (79), Expect = 0.092 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = -1 Query: 458 GNQQPINVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGM 297 GNQQP+ V I + + G + + A + A++ S MKE+M +L + + Sbjct: 53 GNQQPLRVRIEPSLLAEGQDASETAILAALQSAYEHSTTTMKEQMEELTGGLNL 106
>Y442_HAEIN (P44711) UPF0233 protein HI0442| Length = 109 Score = 34.7 bits (78), Expect = 0.12 Identities = 15/51 (29%), Positives = 30/51 (58%) Frame = -1 Query: 437 VEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAGL 285 ++I + ME E + +L+ A+ DA +R+ + KE+MA + + +P G+ Sbjct: 55 IDIDPSLMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTAGMPLPPGM 105
>Y434_NITEU (Q82X61) UPF0133 protein NE0434| Length = 107 Score = 32.0 bits (71), Expect = 0.78 Identities = 15/39 (38%), Positives = 24/39 (61%) Frame = -1 Query: 401 EKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAGL 285 E + +LV A DA +R +E+MA +A +G+PAG+ Sbjct: 65 EMLEDLVAAAVNDAVRRVETVTQEKMASVAGGLGLPAGM 103
>Y095_AGRT5 (Q8UJ43) UPF0133 protein Atu0095/AGR_C_145| Length = 107 Score = 31.2 bits (69), Expect = 1.3 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = -1 Query: 401 EKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAGL 285 E + +L+ A+KDA ++ +E+MADL + +P G+ Sbjct: 65 EILEDLIVAAHKDAKEKGEAQAQEKMADLTAGLPLPPGM 103
>EXON_PRVN3 (P30660) Alkaline exonuclease (EC 3.1.11.-) (Fragment)| Length = 150 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +1 Query: 274 RPSPSPAGIPMLCARSAILS 333 RP P+PAG+P AR+AIL+ Sbjct: 70 RPPPAPAGVPAAAARAAILT 89
>CBID_SYNY3 (P73423) Putative cobalt-precorrin-6A synthase [deacetylating] (EC| 2.1.1.-) Length = 378 Score = 30.0 bits (66), Expect = 2.9 Identities = 17/32 (53%), Positives = 19/32 (59%) Frame = -3 Query: 105 SYSISANVFYTKQMLLCASVEAAGEHL*TNNC 10 S SISA YT + CAS AA E L T+NC Sbjct: 2 SQSISAQSGYTLPVFACASAIAAVETLLTSNC 33
>Y243_CORGL (Q8NTQ9) UPF0133 protein Cgl0243/cg0297| Length = 103 Score = 29.6 bits (65), Expect = 3.8 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = -1 Query: 401 EKVSELVNEAYKDAHQRSVQAMKERMADLAQSIG 300 E + +L+ A+KDAH + +E+M L+Q +G Sbjct: 67 ETLQDLLLGAFKDAHNKVANVAEEKMGPLSQGMG 100
>Y210_COREF (Q8FU11) UPF0133 protein CE0210| Length = 107 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -1 Query: 401 EKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAG 288 E + +LV A+ DAH++ +E+M L+Q G G Sbjct: 67 ETLQDLVQGAFLDAHKKVADLAQEKMGPLSQGFGGDMG 104
>DEOC_MYCHO (P43048) Deoxyribose-phosphate aldolase (EC 4.1.2.4)| (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA) Length = 217 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -1 Query: 437 VEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMAD 318 ++ITE M+ GA+ + +Y+ A +Q MKE D Sbjct: 137 IKITELVMQSGADFIKTSTGFSYRGASFEDIQTMKETCGD 176
>YUD3_BRAJA (Q89BN3) UPF0133 protein bll8115| Length = 106 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = -1 Query: 401 EKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAGL 285 E + +L+ A DA +++ A++E+M L +G+P GL Sbjct: 65 EVLEDLLVTALGDARRKAEAAVQEKMQSLTGGLGLPPGL 103
>RPOC_DESDG (Q30X04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1386 Score = 29.3 bits (64), Expect = 5.0 Identities = 16/63 (25%), Positives = 28/63 (44%) Frame = -1 Query: 458 GNQQPINVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAGLGD 279 G P V L + ++ LV AY+DA ++ + +R+ D+ AG+ Sbjct: 574 GEVLPEGVHFDLVNTVLTKKNIARLVGNAYRDAGTKATVLLCDRLKDIGYEFATRAGVTI 633 Query: 278 GLK 270 G+K Sbjct: 634 GVK 636
>DPOE_SCHPO (P87154) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2199 Score = 28.9 bits (63), Expect = 6.6 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 5/83 (6%) Frame = -3 Query: 267 IKDLVLECFPIMKEVSLNFVF*LC*VHPLNP-----SATPVSCARTVTVHSFPCSLAHPS 103 + D V F MK V F+F LC + PLNP T C +TV + ++ P+ Sbjct: 461 VSDAVATYFLYMKYVH-PFIFSLCNIIPLNPDEVLRKGTGTLCETLLTVEACTKNIILPN 519 Query: 102 YSISANVFYTKQMLLCASVEAAG 34 + A+ + LL + G Sbjct: 520 KHVDASQKFFDGHLLASETYVGG 542
>RPOC_LACPL (Q88XZ2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 28.9 bits (63), Expect = 6.6 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = -1 Query: 395 VSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAGLGDGL 273 +++++ E YK H + + +RM DL +I +GL G+ Sbjct: 620 LADIIAEVYKQYHVTATSLLLDRMKDLGYNISTKSGLTVGV 660
>LIPH_RABIT (O46559) Hepatic triacylglycerol lipase precursor (EC 3.1.1.3)| (Hepatic lipase) (HL) Length = 499 Score = 28.9 bits (63), Expect = 6.6 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -3 Query: 189 HPLNPSATPVSCARTVTVHSFPCSLAHPSYSISA 88 H LN + + CA +VH F SL HPS +A Sbjct: 266 HGLNALSQTIKCAHERSVHLFIDSLLHPSMQSTA 299
>HIS2_CANAL (O74712) Histidine biosynthesis trifunctional protein [Includes:| Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19); Phosphoribosyl-ATP pyrophosphohydrolase (EC 3.6.1.31); Histidinol dehydrogenase (EC 1.1.1.23) (HDH)] Length = 838 Score = 28.9 bits (63), Expect = 6.6 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -1 Query: 434 EITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMAD 318 E+TE ++ + V EL +AH+R+V+ ERMA+ Sbjct: 798 EVTEKGLQNIGKAVMELARVEGLEAHRRAVEIRMERMAE 836
>Y1611_CHRVO (Q7NXL5) UPF0133 protein CV_1611| Length = 112 Score = 28.5 bits (62), Expect = 8.6 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = -1 Query: 443 INVEITEAAMELGAEKVSELVNEAYKDAHQRSVQAMKERMADLAQSIGMPAGL 285 I+ + E A E E + +L+ A+ DA ++ +ERM+ + +PAG+ Sbjct: 57 IDDSVLEDAKE-DKEMLEDLIAAAFNDAVRKVEATTQERMSGFTNGLNLPAGM 108
>SOH1_ARATH (Q8VYB1) Probable mediator complex subunit SOH1| Length = 196 Score = 28.5 bits (62), Expect = 8.6 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = +1 Query: 220 RHFFHYWKAFKYQVFYHLRPSPSPAGIP 303 R F+YWK ++ H+ P P P +P Sbjct: 113 RQQFYYWKNYRNNRLKHILPRPLPEPVP 140 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,913,859 Number of Sequences: 219361 Number of extensions: 1174338 Number of successful extensions: 3261 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 3216 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3261 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
