ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLND_NITOC (Q3JCX7) [Protein-PII] uridylyltransferase (EC 2.7.7.... 33 0.45
2PPH_MYCPN (P75525) Putative protein phosphatase (EC 3.1.3.16) 33 0.59
3FIXF_RHISN (P55467) Protein fixF 29 6.5

>GLND_NITOC (Q3JCX7) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII|
           uridylyl-transferase) (Uridylyl-removing enzyme) (UTase)
          Length = 892

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = -3

Query: 368 FNRGSFDSFLQLDFLGVDKRKGVGGSSAFLY 276
           FN  SFDS LQ DFL V +RK +  S +FL+
Sbjct: 238 FNTWSFDSLLQHDFLTVSERKELLESQSFLW 268



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>PPH_MYCPN (P75525) Putative protein phosphatase (EC 3.1.3.16)|
          Length = 259

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 115 VFVFNSMVSKSYKEWIEDTFIYTNRTQVVCLHMIKRGTRKYAYIAL*LLL 264
           VF F+S   ++ K+W E T I   RT       IKR   ++A +A  L+L
Sbjct: 67  VFDFHSQTERAVKQWFEITLIEARRTLEQYFQTIKRNQVQFARMATTLVL 116



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>FIXF_RHISN (P55467) Protein fixF|
          Length = 402

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -3

Query: 401 PEHILAVVTSGFNR-----GSFDSFLQLDFLGVDKRKGVGGSSAF 282
           PE +LA  + GF R     G F   LQ+D +G++    V   SAF
Sbjct: 138 PESVLAEASKGFKRVFVEDGFFPGTLQIDPVGINAANSVPRCSAF 182


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,401,509
Number of Sequences: 219361
Number of extensions: 1562345
Number of successful extensions: 3764
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3763
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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