ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC165173.2| Zea mays clone ZMMBBb-125O19, complete sequence 180 3e-42
2gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence 143 6e-31
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
4dbj|AP002836.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
5dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
6dbj|AK099852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
7ref|NM_189635.1| Oryza sativa (japonica cultivar-group), Ozsa806... 117 4e-23
8gb|AY112329.1| Zea mays CL65448_1 mRNA sequence 103 6e-19
9gb|AC097174.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.007
10gb|AC093920.4| Oryza sativa (japonica cultivar-group) chromosome... 50 0.007
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
12gb|AC004108.1|AC004108 Homo sapiens chromosome 17, clone HCIT342... 44 0.44
13ref|XM_739582.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 1.7
14gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete ... 42 1.7
15gb|AC091969.3| Homo sapiens chromosome 5 clone RP11-501F22, comp... 42 1.7
16gb|AC132574.3| Mus musculus BAC clone RP24-421H8 from 1, complet... 42 1.7
17gb|AC153622.11| Mus musculus 6 BAC RP23-301N17 (Roswell Park Can... 40 6.9
18gb|BC019897.1| Homo sapiens zinc finger protein 511, mRNA (cDNA ... 40 6.9
19gb|AC161199.4| Mus musculus chromosome 15, clone RP23-383D13, co... 40 6.9
20ref|NM_145806.2| Homo sapiens zinc finger protein 511 (ZNF511), ... 40 6.9
21gb|BC015139.1| Homo sapiens zinc finger protein 511, mRNA (cDNA ... 40 6.9
22gb|AC131715.3| Mus musculus BAC clone RP23-180N22 from chromosom... 40 6.9
23gb|AC125351.3| Mus musculus BAC clone RP23-442M3 from chromosome... 40 6.9
24gb|AC004836.2| Homo sapiens PAC clone RP4-568B10 from 7, complet... 40 6.9
25gb|AC116479.14| Mus musculus, clone RP23-397F3, complete sequence 40 6.9
26emb|AL360181.37| Human DNA sequence from clone RP11-122K13 on ch... 40 6.9
27gb|AC164299.2| Mus musculus BAC clone RP23-313K8 from chromosome... 40 6.9
28emb|CR620153.1| full-length cDNA clone CS0DD009YJ05 of Neuroblas... 40 6.9
29emb|CR617311.1| full-length cDNA clone CS0DI067YC22 of Placenta ... 40 6.9
30emb|CR611284.1| full-length cDNA clone CS0DJ009YN04 of T cells (... 40 6.9
31emb|CR607321.1| full-length cDNA clone CS0DC023YH19 of Neuroblas... 40 6.9
32dbj|AK091711.1| Homo sapiens cDNA FLJ34392 fis, clone HCHON2000265 40 6.9
33emb|CR604803.1| full-length cDNA clone CS0DI086YC15 of Placenta ... 40 6.9
34emb|CR590792.1| full-length cDNA clone CS0DI015YN18 of Placenta ... 40 6.9
35emb|CR590099.1| full-length cDNA clone CS0DI033YF07 of Placenta ... 40 6.9
36gb|AC060771.8| Homo sapiens chromosome 17, clone RP11-169I9, com... 40 6.9
37gb|AF372498.1|AF372498 Glycine max GT-2 factor mRNA, partial cds 40 6.9
38gb|AY820621.1| Haliotrema aurigae 28S ribosomal RNA gene, partia... 40 6.9
39gb|AC011308.8| Homo sapiens BAC clone RP11-522N18 from 2, comple... 40 6.9
40gb|AC159138.6| Mus musculus BAC RP23-315F23 (Roswell Park Cance... 40 6.9
41gb|AC158651.12| Mus musculus BAC RP24-68I7 (Roswell Park Cancer... 40 6.9
42dbj|BS000205.2| Pan troglodytes chromosome 22 clone:RP43-093B21,... 40 6.9
43gb|AC011595.13| Homo sapiens 12 BAC RP11-114F10 (Roswell Park Ca... 40 6.9
44gb|AC131674.2| Mus musculus BAC clone RP23-322I3 from 17, comple... 40 6.9
45dbj|AP006105.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 6.9
46dbj|AP004896.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 6.9
47gb|AC167974.3| Mus musculus BAC clone RP23-314B11 from chromosom... 40 6.9
48gb|AC171681.1| Mus musculus BAC clone RP24-530O2 from chromosome... 40 6.9
49emb|X52702.1|BMDNA3 Blue Whale common cetacean component DNA 40 6.9
50emb|X52700.1|BMDNA1 Blue Whale common cetacean component DNA 40 6.9 
>gb|AC165173.2| Zea mays clone ZMMBBb-125O19, complete sequence
          Length = 157660

 Score =  180 bits (91), Expect = 3e-42
 Identities = 224/263 (85%), Gaps = 4/263 (1%)
 Strand = Plus / Plus

                                                                         
Query: 250   ctgtagttgcttctttggcctggtcaataaagaaaggccgagctgccccccactcctttt 309
             |||||| ||||||||||| ||||||||||||||||||||  ||||||| | |||| ||| 
Sbjct: 91892 ctgtagctgcttctttggtctggtcaataaagaaaggccttgctgcccgc-actc-tttc 91949

                                                                         
Query: 310   cttttatcaactcccaaaaaatcgagttgtaaaaagctat-caaaagaacctctgttaaa 368
             ||||||||||||| |||||||||||||||||||||||| | || ||| ||||| ||| | 
Sbjct: 91950 cttttatcaactcacaaaaaatcgagttgtaaaaagctttccagaaggacctcagtt-ac 92008

                                                                         
Query: 369   accggatgtcacgactgccagaatatgttcgggtccttgctgtatactgcttggtcttgg 428
             ||| | ||||| |||||||| || ||||| ||||| ||||| ||||| ||  ||||||| 
Sbjct: 92009 accaggtgtcatgactgccaaaagatgtttgggtcgttgctatataccgcacggtcttga 92068

                                                                         
Query: 429   atctctagattacccacatgccagtcaacaagccttgcttggatgcatttcaacaacatc 488
             ||||||| |||| | || ||||| ||||||||||||||||| ||||||||||||| ||| 
Sbjct: 92069 atctctaaattagcaacgtgccaatcaacaagccttgcttgaatgcatttcaacaccatg 92128

                                    
Query: 489   agtccagtcggaaacagccacca 511
             |||||||| || || ||||||||
Sbjct: 92129 agtccagttgggaagagccacca 92151



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 69/74 (93%), Gaps = 2/74 (2%)
 Strand = Plus / Plus

                                                                         
Query: 127   aactctatggtgtctaaatcctacaaagaatggatcgaggacacc-tttatatatacaaa 185
             |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct: 91769 aactctatggtgtctaaatcctacaaagaatggatcaagaacaccttttatatatac-aa 91827

                           
Query: 186   cagaacacaggttg 199
             |||||||| |||||
Sbjct: 91828 cagaacaccggttg 91841
to top
>gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence
          Length = 187659

 Score =  143 bits (72), Expect = 6e-31
 Identities = 219/264 (82%), Gaps = 8/264 (3%)
 Strand = Plus / Minus

                                                                         
Query: 250   ctgtagttgcttctttggcctggtcaataaagaaaggccgagctgccccccactcctttt 309
             |||||||| ||||||| ||||||||||||||||||||||    |  ||| |||||  || 
Sbjct: 70020 ctgtagttccttcttttgcctggtcaataaagaaaggcct---ttgcccgcactc--ttc 69966

                                                                         
Query: 310   cttttatcaactcccaaaaaatcgagttgtaaaaagctatcaaaa--gaacctctgttaa 367
             ||||||||||||||||||||||||||||||||||||||  | | |  || |||| |||| 
Sbjct: 69965 cttttatcaactcccaaaaaatcgagttgtaaaaagcttcccagaaggaccctcagttac 69906

                                                                         
Query: 368   aaccggatgtcacgactgccagaatatgttcgggtccttgctgtatactgcttggtcttg 427
             ||| ||  |||| |||||||| |||||||| ||||| ||||| ||||| ||  |||||||
Sbjct: 69905 aacaggg-gtcatgactgccaaaatatgtttgggtcattgctatataccgcacggtcttg 69847

                                                                         
Query: 428   gatctctagattacccacatgccagtcaacaagccttgcttggatgcatttcaacaacat 487
              ||||||| |||| | || ||||| ||||||||||||||||| ||||||||||||| |||
Sbjct: 69846 aatctctaaattagcaacgtgccaatcaacaagccttgcttgaatgcatttcaacagcat 69787

                                     
Query: 488   cagtccagtcggaaacagccacca 511
              ||||| || || || ||||||||
Sbjct: 69786 gagtccggttgggaagagccacca 69763



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 64/68 (94%), Gaps = 2/68 (2%)
 Strand = Plus / Minus

                                                                         
Query: 127   aactctatggtgtctaaatcctacaaagaatggatcgaggacacc-tttatatatacaaa 185
             |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct: 70143 aactctatggtgtctaaatcctacaaagaatggatcaagaacaccttttatatatac-aa 70085

                     
Query: 186   cagaacac 193
             ||||||||
Sbjct: 70084 cagaacac 70077
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  121 bits (61), Expect = 2e-24
 Identities = 118/137 (86%)
 Strand = Plus / Minus

                                                                           
Query: 375     tgtcacgactgccagaatatgttcgggtccttgctgtatactgcttggtcttggatctct 434
               ||||| |||||||| |||||| | ||||| ||||| ||||||||  ||||||| ||||||
Sbjct: 4683268 tgtcatgactgccaaaatatgcttgggtcattgctatatactgcgcggtcttgaatctct 4683209

                                                                           
Query: 435     agattacccacatgccagtcaacaagccttgcttggatgcatttcaacaacatcagtcca 494
               | |||| |||||||||| || |||||||| |||||||||||||||| |||||| ||||||
Sbjct: 4683208 aaattagccacatgccaatcgacaagcctagcttggatgcatttcagcaacatgagtcca 4683149

                                
Query: 495     gtcggaaacagccacca 511
               || || || ||||||||
Sbjct: 4683148 gtagggaagagccacca 4683132



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                           
Query: 97      tctcttcagttagcttgggtatttgttttcaactctatggtgtctaaatcctacaaagaa 156
               ||||||||||||||||||| | |  || | ||||||||||||||||||||||||||| ||
Sbjct: 4683573 tctcttcagttagcttgggaactgtttataaactctatggtgtctaaatcctacaaataa 4683514

                                 
Query: 157     tggatcgaggacaccttt 174
               |||||| || ||||||||
Sbjct: 4683513 tggatcaagtacaccttt 4683496



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                  
Query: 310     cttttatcaactcccaaaaaatcgagttgtaaaaagctatcaaaagaacct 360
               |||||||||||||||||||||| |||||||||||||||  |||||||||||
Sbjct: 4683339 cttttatcaactcccaaaaaattgagttgtaaaaagctcccaaaagaacct 4683289
to top
>dbj|AP002836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0512G09
          Length = 146921

 Score =  121 bits (61), Expect = 2e-24
 Identities = 118/137 (86%)
 Strand = Plus / Minus

                                                                         
Query: 375   tgtcacgactgccagaatatgttcgggtccttgctgtatactgcttggtcttggatctct 434
             ||||| |||||||| |||||| | ||||| ||||| ||||||||  ||||||| ||||||
Sbjct: 43513 tgtcatgactgccaaaatatgcttgggtcattgctatatactgcgcggtcttgaatctct 43454

                                                                         
Query: 435   agattacccacatgccagtcaacaagccttgcttggatgcatttcaacaacatcagtcca 494
             | |||| |||||||||| || |||||||| |||||||||||||||| |||||| ||||||
Sbjct: 43453 aaattagccacatgccaatcgacaagcctagcttggatgcatttcagcaacatgagtcca 43394

                              
Query: 495   gtcggaaacagccacca 511
             || || || ||||||||
Sbjct: 43393 gtagggaagagccacca 43377



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                         
Query: 97    tctcttcagttagcttgggtatttgttttcaactctatggtgtctaaatcctacaaagaa 156
             ||||||||||||||||||| | |  || | ||||||||||||||||||||||||||| ||
Sbjct: 43818 tctcttcagttagcttgggaactgtttataaactctatggtgtctaaatcctacaaataa 43759

                               
Query: 157   tggatcgaggacaccttt 174
             |||||| || ||||||||
Sbjct: 43758 tggatcaagtacaccttt 43741



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                
Query: 310   cttttatcaactcccaaaaaatcgagttgtaaaaagctatcaaaagaacct 360
             |||||||||||||||||||||| |||||||||||||||  |||||||||||
Sbjct: 43584 cttttatcaactcccaaaaaattgagttgtaaaaagctcccaaaagaacct 43534
to top
>dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0695A04
          Length = 158133

 Score =  121 bits (61), Expect = 2e-24
 Identities = 118/137 (86%)
 Strand = Plus / Minus

                                                                         
Query: 375   tgtcacgactgccagaatatgttcgggtccttgctgtatactgcttggtcttggatctct 434
             ||||| |||||||| |||||| | ||||| ||||| ||||||||  ||||||| ||||||
Sbjct: 90484 tgtcatgactgccaaaatatgcttgggtcattgctatatactgcgcggtcttgaatctct 90425

                                                                         
Query: 435   agattacccacatgccagtcaacaagccttgcttggatgcatttcaacaacatcagtcca 494
             | |||| |||||||||| || |||||||| |||||||||||||||| |||||| ||||||
Sbjct: 90424 aaattagccacatgccaatcgacaagcctagcttggatgcatttcagcaacatgagtcca 90365

                              
Query: 495   gtcggaaacagccacca 511
             || || || ||||||||
Sbjct: 90364 gtagggaagagccacca 90348



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                         
Query: 97    tctcttcagttagcttgggtatttgttttcaactctatggtgtctaaatcctacaaagaa 156
             ||||||||||||||||||| | |  || | ||||||||||||||||||||||||||| ||
Sbjct: 90789 tctcttcagttagcttgggaactgtttataaactctatggtgtctaaatcctacaaataa 90730

                               
Query: 157   tggatcgaggacaccttt 174
             |||||| || ||||||||
Sbjct: 90729 tggatcaagtacaccttt 90712



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                
Query: 310   cttttatcaactcccaaaaaatcgagttgtaaaaagctatcaaaagaacct 360
             |||||||||||||||||||||| |||||||||||||||  |||||||||||
Sbjct: 90555 cttttatcaactcccaaaaaattgagttgtaaaaagctcccaaaagaacct 90505
to top
>dbj|AK099852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110D09, full
            insert sequence
          Length = 4971

 Score =  121 bits (61), Expect = 2e-24
 Identities = 118/137 (86%)
 Strand = Plus / Minus

                                                                        
Query: 375  tgtcacgactgccagaatatgttcgggtccttgctgtatactgcttggtcttggatctct 434
            ||||| |||||||| |||||| | ||||| ||||| ||||||||  ||||||| ||||||
Sbjct: 4474 tgtcatgactgccaaaatatgcttgggtcattgctatatactgcgcggtcttgaatctct 4415

                                                                        
Query: 435  agattacccacatgccagtcaacaagccttgcttggatgcatttcaacaacatcagtcca 494
            | |||| |||||||||| || |||||||| |||||||||||||||| |||||| ||||||
Sbjct: 4414 aaattagccacatgccaatcgacaagcctagcttggatgcatttcagcaacatgagtcca 4355

                             
Query: 495  gtcggaaacagccacca 511
            || || || ||||||||
Sbjct: 4354 gtagggaagagccacca 4338



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                        
Query: 97   tctcttcagttagcttgggtatttgttttcaactctatggtgtctaaatcctacaaagaa 156
            ||||||||||||||||||| | |  || | ||||||||||||||||||||||||||| ||
Sbjct: 4779 tctcttcagttagcttgggaactgtttataaactctatggtgtctaaatcctacaaataa 4720

                              
Query: 157  tggatcgaggacaccttt 174
            |||||| || ||||||||
Sbjct: 4719 tggatcaagtacaccttt 4702



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                               
Query: 310  cttttatcaactcccaaaaaatcgagttgtaaaaagctatcaaaagaacct 360
            |||||||||||||||||||||| |||||||||||||||  |||||||||||
Sbjct: 4545 cttttatcaactcccaaaaaattgagttgtaaaaagctcccaaaagaacct 4495
to top
>ref|NM_189635.1| Oryza sativa (japonica cultivar-group), Ozsa8063 predicted mRNA
          Length = 4227

 Score =  117 bits (59), Expect = 4e-23
 Identities = 113/131 (86%)
 Strand = Plus / Minus

                                                                        
Query: 381  gactgccagaatatgttcgggtccttgctgtatactgcttggtcttggatctctagatta 440
            |||||||| |||||| | ||||| ||||| ||||||||  ||||||| ||||||| ||||
Sbjct: 4223 gactgccaaaatatgcttgggtcattgctatatactgcgcggtcttgaatctctaaatta 4164

                                                                        
Query: 441  cccacatgccagtcaacaagccttgcttggatgcatttcaacaacatcagtccagtcgga 500
             |||||||||| || |||||||| |||||||||||||||| |||||| |||||||| || 
Sbjct: 4163 gccacatgccaatcgacaagcctagcttggatgcatttcagcaacatgagtccagtaggg 4104

                       
Query: 501  aacagccacca 511
            || ||||||||
Sbjct: 4103 aagagccacca 4093
to top
>gb|AY112329.1| Zea mays CL65448_1 mRNA sequence
          Length = 661

 Score =  103 bits (52), Expect = 6e-19
 Identities = 115/136 (84%)
 Strand = Plus / Plus

                                                                       
Query: 376 gtcacgactgccagaatatgttcgggtccttgctgtatactgcttggtcttggatctcta 435
           |||| |||||||| |||||||| ||||| ||||| ||||| ||  ||||||| |||||||
Sbjct: 512 gtcatgactgccaaaatatgtttgggtcattgctatataccgcacggtcttgaatctcta 571

                                                                       
Query: 436 gattacccacatgccagtcaacaagccttgcttggatgcatttcaacaacatcagtccag 495
            |||| | || ||||| ||||||||||||||||| ||||||||||||| ||| ||||| |
Sbjct: 572 aattagcaacgtgccaatcaacaagccttgcttgaatgcatttcaacagcatgagtccgg 631

                           
Query: 496 tcggaaacagccacca 511
           | || || ||||||||
Sbjct: 632 ttgggaagagccacca 647



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 64/68 (94%), Gaps = 2/68 (2%)
 Strand = Plus / Plus

                                                                       
Query: 127 aactctatggtgtctaaatcctacaaagaatggatcgaggacacc-tttatatatacaaa 185
           |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct: 267 aactctatggtgtctaaatcctacaaagaatggatcaagaacaccttttatatatac-aa 325

                   
Query: 186 cagaacac 193
           ||||||||
Sbjct: 326 cagaacac 333



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 250 ctgtagttgcttctttggcctggtcaataaagaaaggcc 288
           |||||||| ||||||| ||||||||||||||||||||||
Sbjct: 390 ctgtagttccttcttttgcctggtcaataaagaaaggcc 428
to top
>gb|AC097174.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1111_A10,
              complete sequence
          Length = 155106

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 130    tctatggtgtctaaatcctacaaagaatggatc 162
              ||||||||||| | |||||||||||||||||||
Sbjct: 106697 tctatggtgtccagatcctacaaagaatggatc 106665



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 311    ttttatcaactcccaaaaaatcgagttg 338
              ||||||||||||||||||| ||||||||
Sbjct: 106510 ttttatcaactcccaaaaactcgagttg 106483



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                          
Query: 444    acatgccagtcaacaagccttgcttggatgcatttcaacaacatcagtccagtcggaaac 503
              |||||||| || ||||| |||||||||||||||||  | ||||  ||||| || || |||
Sbjct: 106379 acatgccaatcgacaagtcttgcttggatgcatttacataacacaagtcctgttgggaac 106320

                      
Query: 504    agccacca 511
              ||||||||
Sbjct: 106319 agccacca 106312
to top
>gb|AC093920.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1725_E07,
            complete sequence
          Length = 87244

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 130  tctatggtgtctaaatcctacaaagaatggatc 162
            ||||||||||| | |||||||||||||||||||
Sbjct: 8851 tctatggtgtccagatcctacaaagaatggatc 8819



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 311  ttttatcaactcccaaaaaatcgagttg 338
            ||||||||||||||||||| ||||||||
Sbjct: 8664 ttttatcaactcccaaaaactcgagttg 8637



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 444  acatgccagtcaacaagccttgcttggatgcatttcaacaacatcagtccagtcggaaac 503
            |||||||| || ||||| |||||||||||||||||  | ||||  ||||| || || |||
Sbjct: 8533 acatgccaatcgacaagtcttgcttggatgcatttacataacacaagtcctgttgggaac 8474

                    
Query: 504  agccacca 511
            ||||||||
Sbjct: 8473 agccacca 8466
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                
Query: 130     tctatggtgtctaaatcctacaaagaatggatc 162
               ||||||||||| | |||||||||||||||||||
Sbjct: 5192194 tctatggtgtccagatcctacaaagaatggatc 5192162



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 311     ttttatcaactcccaaaaaatcgagttg 338
               ||||||||||||||||||| ||||||||
Sbjct: 5192007 ttttatcaactcccaaaaactcgagttg 5191980



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                           
Query: 444     acatgccagtcaacaagccttgcttggatgcatttcaacaacatcagtccagtcggaaac 503
               |||||||| || ||||| |||||||||||||||||  | ||||  ||||| || || |||
Sbjct: 5191876 acatgccaatcgacaagtcttgcttggatgcatttacataacacaagtcctgttgggaac 5191817

                       
Query: 504     agccacca 511
               ||||||||
Sbjct: 5191816 agccacca 5191809
to top
>gb|AC004108.1|AC004108 Homo sapiens chromosome 17, clone HCIT342E3, complete sequence
          Length = 92312

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 339  taaaaagctatcaaaagaacctctgt 364
            |||||||||||||||||||| |||||
Sbjct: 6558 taaaaagctatcaaaagaacatctgt 6583
to top
>ref|XM_739582.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000280.00.0)
           partial mRNA
          Length = 546

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 325 aaaaaatcgagttgtaaaaag 345
           |||||||||||||||||||||
Sbjct: 394 aaaaaatcgagttgtaaaaag 374
to top
>gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete sequence
          Length = 129921

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 308    ttcttttatcaactcccaaaa 328
              |||||||||||||||||||||
Sbjct: 126312 ttcttttatcaactcccaaaa 126292
to top
>gb|AC091969.3| Homo sapiens chromosome 5 clone RP11-501F22, complete sequence
          Length = 177647

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 175    atatatacaaacagaacacag 195
              |||||||||||||||||||||
Sbjct: 117984 atatatacaaacagaacacag 117964
to top
>gb|AC132574.3| Mus musculus BAC clone RP24-421H8 from 1, complete sequence
          Length = 173036

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 297    ccccactccttttcttttatc 317
              |||||||||||||||||||||
Sbjct: 123474 ccccactccttttcttttatc 123494
to top
>gb|AC153622.11| Mus musculus 6 BAC RP23-301N17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 195335

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    acacaaggggcaaggtcaga 49
             ||||||||||||||||||||
Sbjct: 36623 acacaaggggcaaggtcaga 36642
to top
>gb|BC019897.1| Homo sapiens zinc finger protein 511, mRNA (cDNA clone MGC:30006
           IMAGE:5123355), complete cds
          Length = 1098

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 ctgccccccactccttttct 311
           ||||||||||||||||||||
Sbjct: 811 ctgccccccactccttttct 792
to top
>gb|AC161199.4| Mus musculus chromosome 15, clone RP23-383D13, complete sequence
          Length = 218523

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 295   ccccccactccttttctttt 314
             ||||||||||||||||||||
Sbjct: 94144 ccccccactccttttctttt 94125
to top
>ref|NM_145806.2| Homo sapiens zinc finger protein 511 (ZNF511), mRNA
          Length = 1098

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 ctgccccccactccttttct 311
           ||||||||||||||||||||
Sbjct: 811 ctgccccccactccttttct 792
to top
>gb|BC015139.1| Homo sapiens zinc finger protein 511, mRNA (cDNA clone
           IMAGE:4040789), partial cds
          Length = 1127

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 ctgccccccactccttttct 311
           ||||||||||||||||||||
Sbjct: 831 ctgccccccactccttttct 812
to top
>gb|AC131715.3| Mus musculus BAC clone RP23-180N22 from chromosome 6, complete sequence
          Length = 180102

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    aggttgtgtgcctgcatatg 213
              ||||||||||||||||||||
Sbjct: 142411 aggttgtgtgcctgcatatg 142430
to top
>gb|AC125351.3| Mus musculus BAC clone RP23-442M3 from chromosome 12, complete sequence
          Length = 188024

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 429   atctctagattacccacatg 448
             ||||||||||||||||||||
Sbjct: 56472 atctctagattacccacatg 56491
to top
>gb|AC004836.2| Homo sapiens PAC clone RP4-568B10 from 7, complete sequence
          Length = 103694

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    acaaacaacaaaatcccctc 95
             ||||||||||||||||||||
Sbjct: 73959 acaaacaacaaaatcccctc 73940
to top
>gb|AC116479.14| Mus musculus, clone RP23-397F3, complete sequence
          Length = 225423

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    ctttatatatacaaacagaa 190
              ||||||||||||||||||||
Sbjct: 172994 ctttatatatacaaacagaa 173013
to top
>emb|AL360181.37| Human DNA sequence from clone RP11-122K13 on chromosome 10 Contains the
             5' end of the TUBGCP2 gene for tubulin gamma complex
             associated protein 2, the gene for a novel protein, the
             gene for calcyon D1 dopamine receptor-interacting protein
             (CALCYON), an autointegration factor (BANF1) pseudogene, a
             novel gene, the gene for uterine-specific proline-rich
             acidic protein (UPA), gene FLJ34392, the ECHS1 gene for
             enoyl Coenzyme A hydratase, short chain, 1, mitachondrial,
             the gene for peroxisomal N1-acetyl-spermine/spermidine
             oxidase (PAO), a novel gene, the 5' end of a novel gene
             (LOC92170) and ten CpG islands, complete sequence
          Length = 116311

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   ctgccccccactccttttct 311
             ||||||||||||||||||||
Sbjct: 20406 ctgccccccactccttttct 20387
to top
>gb|AC164299.2| Mus musculus BAC clone RP23-313K8 from chromosome 1, complete sequence
          Length = 160562

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    atatatacaaacagaacaca 194
              ||||||||||||||||||||
Sbjct: 149202 atatatacaaacagaacaca 149183
to top
>emb|CR620153.1| full-length cDNA clone CS0DD009YJ05 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 1043

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 ctgccccccactccttttct 311
           ||||||||||||||||||||
Sbjct: 782 ctgccccccactccttttct 763
to top
>emb|CR617311.1| full-length cDNA clone CS0DI067YC22 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 782

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 ctgccccccactccttttct 311
           ||||||||||||||||||||
Sbjct: 514 ctgccccccactccttttct 495
to top
>emb|CR611284.1| full-length cDNA clone CS0DJ009YN04 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1030

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 ctgccccccactccttttct 311
           ||||||||||||||||||||
Sbjct: 795 ctgccccccactccttttct 776
to top
>emb|CR607321.1| full-length cDNA clone CS0DC023YH19 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 745

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 ctgccccccactccttttct 311
           ||||||||||||||||||||
Sbjct: 481 ctgccccccactccttttct 462
to top
>dbj|AK091711.1| Homo sapiens cDNA FLJ34392 fis, clone HCHON2000265
          Length = 2004

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 292  ctgccccccactccttttct 311
            ||||||||||||||||||||
Sbjct: 1735 ctgccccccactccttttct 1716
to top
>emb|CR604803.1| full-length cDNA clone CS0DI086YC15 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1046

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 ctgccccccactccttttct 311
           ||||||||||||||||||||
Sbjct: 795 ctgccccccactccttttct 776
to top
>emb|CR590792.1| full-length cDNA clone CS0DI015YN18 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1062

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 ctgccccccactccttttct 311
           ||||||||||||||||||||
Sbjct: 796 ctgccccccactccttttct 777
to top
>emb|CR590099.1| full-length cDNA clone CS0DI033YF07 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1148

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 ctgccccccactccttttct 311
           ||||||||||||||||||||
Sbjct: 908 ctgccccccactccttttct 889
to top
>gb|AC060771.8| Homo sapiens chromosome 17, clone RP11-169I9, complete sequence
          Length = 138969

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 79    aacaacaaaatcccctcctctctt 102
             ||||||||||||| ||||||||||
Sbjct: 41220 aacaacaaaatcctctcctctctt 41243
to top
>gb|AF372498.1|AF372498 Glycine max GT-2 factor mRNA, partial cds
          Length = 1279

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 67  acaacaagcacaaacaacaa 86
           ||||||||||||||||||||
Sbjct: 406 acaacaagcacaaacaacaa 425
to top
>gb|AY820621.1| Haliotrema aurigae 28S ribosomal RNA gene, partial sequence
          Length = 771

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 160 atcgaggacacctttatatatacaaaca 187
           ||||||||| | ||||||||||||||||
Sbjct: 161 atcgaggacccgtttatatatacaaaca 134
to top
>gb|AC011308.8| Homo sapiens BAC clone RP11-522N18 from 2, complete sequence
          Length = 124740

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   aaatcctacaaagaatggat 161
             ||||||||||||||||||||
Sbjct: 40511 aaatcctacaaagaatggat 40530
to top
>gb|AC159138.6| Mus musculus  BAC RP23-315F23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 180124

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     acacaaggggcaaggtcaga 49
              ||||||||||||||||||||
Sbjct: 122653 acacaaggggcaaggtcaga 122672
to top
>gb|AC158651.12| Mus musculus  BAC RP24-68I7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 190089

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    aggttgtgtgcctgcatatg 213
              ||||||||||||||||||||
Sbjct: 120011 aggttgtgtgcctgcatatg 119992
to top
>dbj|BS000205.2| Pan troglodytes chromosome 22 clone:RP43-093B21, map 22, complete
             sequences
          Length = 203521

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   tcttttatcaactcccaaaa 328
             ||||||||||||||||||||
Sbjct: 75423 tcttttatcaactcccaaaa 75404
to top
>gb|AC011595.13| Homo sapiens 12 BAC RP11-114F10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 152358

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 295   ccccccactccttttctttt 314
             ||||||||||||||||||||
Sbjct: 31720 ccccccactccttttctttt 31701
to top
>gb|AC131674.2| Mus musculus BAC clone RP23-322I3 from 17, complete sequence
          Length = 226594

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    aggacacctttatatataca 183
              ||||||||||||||||||||
Sbjct: 153843 aggacacctttatatataca 153862
to top
>dbj|AP006105.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT14C19, TM0190,
            complete sequence
          Length = 125299

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 54   taacacaacagcgacaacaa 73
            ||||||||||||||||||||
Sbjct: 2599 taacacaacagcgacaacaa 2580
to top
>dbj|AP004896.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT16I07, TM0040,
             complete sequence
          Length = 92281

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    aacaagcacaaacaacaaaa 88
             ||||||||||||||||||||
Sbjct: 51107 aacaagcacaaacaacaaaa 51088
to top
>gb|AC167974.3| Mus musculus BAC clone RP23-314B11 from chromosome 1, complete sequence
          Length = 210757

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    atatatacaaacagaacaca 194
              ||||||||||||||||||||
Sbjct: 129088 atatatacaaacagaacaca 129069
to top
>gb|AC171681.1| Mus musculus BAC clone RP24-530O2 from chromosome 14, complete
            sequence
          Length = 198038

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 171  ctttatatatacaaacagaa 190
            ||||||||||||||||||||
Sbjct: 9513 ctttatatatacaaacagaa 9532
to top
>emb|X52702.1|BMDNA3 Blue Whale common cetacean component DNA
          Length = 1758

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 320 ctcccaaaaaatcgagttgtaaaa 343
           ||||||||||| ||||||||||||
Sbjct: 506 ctcccaaaaaagcgagttgtaaaa 529
to top
>emb|X52700.1|BMDNA1 Blue Whale common cetacean component DNA
          Length = 1759

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 320 ctcccaaaaaatcgagttgtaaaa 343
           ||||||||||| ||||||||||||
Sbjct: 505 ctcccaaaaaagcgagttgtaaaa 528


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,430,056
Number of Sequences: 3902068
Number of extensions: 5430056
Number of successful extensions: 101279
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101093
Number of HSP's gapped (non-prelim): 181
length of query: 511
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 488
effective length of database: 17,143,297,704
effective search space: 8365929279552
effective search space used: 8365929279552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top