ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39g17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ634003.1| Schedonorus arundinaceus mRNA for putative mitog... 198 1e-47
2emb|AJ512642.1|OSA512642 Oryza sativa (japonica cultivar-group) ... 101 2e-18
3emb|AJ251330.1|OSA251330 Oryza sativa mRNA for MAPK4 protein (ma... 101 2e-18
4gb|AF216316.1| Oryza sativa MAP kinase 2 mRNA, complete cds 101 2e-18
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
6dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
7dbj|AK071376.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
8gb|BT016743.1| Zea mays clone Contig576 mRNA sequence 92 2e-15
9gb|AY105935.1| Zea mays PCO126466 mRNA sequence 92 2e-15
10gb|DQ295030.1| Zea mays putative MAPK mRNA, complete cds 84 4e-13
11ref|XM_464163.1| Oryza sativa (japonica cultivar-group), mRNA 68 3e-08
12gb|AF216317.1| Oryza sativa MAP kinase 3 mRNA, complete cds 68 3e-08
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
14gb|AF241166.1|AF241166 Oryza sativa MAP kinase MAPK2 mRNA, compl... 68 3e-08
15dbj|AP005191.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
16dbj|AK119650.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
17gb|BT018644.1| Zea mays clone EL01N0505B01.d mRNA sequence 50 0.006
18gb|AY107930.1| Zea mays PCO133201 mRNA sequence 50 0.006
19emb|BX470150.13| Zebrafish DNA sequence from clone DKEY-164K14 i... 44 0.37
20ref|XM_239684.3| PREDICTED: Rattus norvegicus similar to Myosin ... 42 1.5
21gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 5.7
22ref|XM_585790.2| PREDICTED: Bos taurus hypothetical LOC508934 (L... 40 5.7
23gb|AC161008.4| Pan troglodytes BAC clone CH251-634F15 from chrom... 40 5.7
24gb|AC147300.3| Pan troglodytes BAC clone RP43-56D24 from 7, comp... 40 5.7
25gb|AC121572.2| Mus musculus BAC clone RP23-234P16 from 5, comple... 40 5.7
26gb|AC004015.1| Homo sapiens BAC clone CTA-333F24 from 7, complet... 40 5.7
27gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 40 5.7
28dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 40 5.7
29gb|AC161936.2| Pan troglodytes BAC clone CH251-175C18 from chrom... 40 5.7
30gb|AC008446.5| Homo sapiens chromosome 5 clone CTC-340A15, compl... 40 5.7
31gb|AC113052.10| Mus musculus chromosome 5, clone RP23-250D22, co... 40 5.7
32gb|AC106900.3| Homo sapiens BAC clone RP11-796E10 from 2, comple... 40 5.7
33gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 5.7
34gb|AC155253.1| Mus musculus BAC clone RP24-172G9 from 17, comple... 40 5.7
35emb|AL132801.5|CNS01DTN Human chromosome 14 DNA sequence BAC R-6... 40 5.7
36emb|CT030652.14| Mouse DNA sequence from clone RP23-48G20 on chr... 40 5.7
37gb|AC163711.3| Gallus gallus BAC clone CH261-27J21 from chromoso... 40 5.7
38gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 5.7
39gb|AC149588.4| Mus musculus BAC clone RP23-366I10 from 15, compl... 40 5.7
40emb|AL929147.7| Mouse DNA sequence from clone RP23-429P18 on chr... 40 5.7
41dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 5.7
42emb|AL645905.11| Mouse DNA sequence from clone RP23-19M18 on chr... 40 5.7 
>emb|AJ634003.1| Schedonorus arundinaceus mRNA for putative mitogen-activated protein
            kinase (mapk gene)
          Length = 1470

 Score =  198 bits (100), Expect = 1e-47
 Identities = 163/184 (88%)
 Strand = Plus / Minus

                                                                        
Query: 241  aagatttaaaccaagaacgaacatgtgaagaccctggtgtggcacactgctgtcacatgt 300
            |||||||| || || |||||||||| ||||| ||||||| |||| |||||| ||||||||
Sbjct: 1187 aagatttatacaaaaaacgaacatgcgaagagcctggtgcggcatactgctctcacatgt 1128

                                                                        
Query: 301  tcattcctgcttgtcacatattcaccatcctggcggcctcggggtgatactggagcatct 360
            ||||||||||||||||||||||||||||  |||||||||| ||||| |||||||||||||
Sbjct: 1127 tcattcctgcttgtcacatattcaccattgtggcggcctcagggtggtactggagcatct 1068

                                                                        
Query: 361  cctgccacaacatttcccggatcatatctgtgccaatgttttcatctatgtcaagatcga 420
            |||||||||||||||| |||||| | |||   || |||||||||||||| |||||||| |
Sbjct: 1067 cctgccacaacatttctcggatcgtctctacaccgatgttttcatctatatcaagatcaa 1008

                
Query: 421  tggg 424
            ||||
Sbjct: 1007 tggg 1004



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 86/101 (85%), Gaps = 2/101 (1%)
 Strand = Plus / Minus

                                                                        
Query: 102  aactgaactccgcttctacaatacagtagtccatatatactaccaagtactgacccacag 161
            ||||||| ||||||||||||| ||||||   ||||||||||| |||||| ||| ||| ||
Sbjct: 1335 aactgaattccgcttctacaacacagtacaacatatatacta-caagtagtgatccatag 1277

                                                     
Query: 162  ctagagaaatccatacgc-cgtttattgtgcacatatttac 201
            | ||| ||||||||||||  | |||||||||| ||||||||
Sbjct: 1276 ccagaaaaatccatacgctggcttattgtgcaaatatttac 1236



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 57   aagattacaacttacacaag 76
            ||||||||||||||||||||
Sbjct: 1363 aagattacaacttacacaag 1344
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>emb|AJ512642.1|OSA512642 Oryza sativa (japonica cultivar-group) mRNA for putative
            mitogen-activated protein kinase msrmk3 (msrmk3 gene)
          Length = 1371

 Score =  101 bits (51), Expect = 2e-18
 Identities = 156/189 (82%), Gaps = 4/189 (2%)
 Strand = Plus / Minus

                                                                        
Query: 241  aagatttaaaccaagaacgaacatgtgaagaccctggtgtggcacactgctgtcacatgt 300
            |||||||| || || ||| |||||||||||| | | |||| ||||  |||  ||||||||
Sbjct: 1203 aagatttatacaaaaaaccaacatgtgaagatcttagtgtagcacgttgccttcacatgt 1144

                                                                        
Query: 301  tcattcctgcttgtcacatattcaccatcctgg--cggcctcggggtgatactggagcat 358
            || ||| ||| ||||||||||||||  |||||   |  |||| |||||||| ||||||||
Sbjct: 1143 tcgttcttgcctgtcacatattcac--tcctgcaacaacctctgggtgatagtggagcat 1086

                                                                        
Query: 359  ctcctgccacaacatttcccggatcatatctgtgccaatgttttcatctatgtcaagatc 418
            ||||||||||| ||| ||||||||||||||   |||||  |||||||| ||||| |||||
Sbjct: 1085 ctcctgccacatcatctcccggatcatatccacgccaagattttcatcgatgtcgagatc 1026

                     
Query: 419  gatgggcac 427
            |||||||||
Sbjct: 1025 gatgggcac 1017
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>emb|AJ251330.1|OSA251330 Oryza sativa mRNA for MAPK4 protein (mapk4 gene)
          Length = 1653

 Score =  101 bits (51), Expect = 2e-18
 Identities = 156/189 (82%), Gaps = 4/189 (2%)
 Strand = Plus / Minus

                                                                        
Query: 241  aagatttaaaccaagaacgaacatgtgaagaccctggtgtggcacactgctgtcacatgt 300
            |||||||| || || ||| |||||||||||| | | |||| ||||  |||  ||||||||
Sbjct: 1407 aagatttatacaaaaaaccaacatgtgaagatcttagtgtagcacgttgccttcacatgt 1348

                                                                        
Query: 301  tcattcctgcttgtcacatattcaccatcctgg--cggcctcggggtgatactggagcat 358
            || ||| ||| ||||||||||||||  |||||   |  |||| |||||||| ||||||||
Sbjct: 1347 tcgttcttgcctgtcacatattcac--tcctgcaacaacctctgggtgatagtggagcat 1290

                                                                        
Query: 359  ctcctgccacaacatttcccggatcatatctgtgccaatgttttcatctatgtcaagatc 418
            ||||||||||| ||| ||||||||||||||   |||||  |||||||| ||||| |||||
Sbjct: 1289 ctcctgccacatcatctcccggatcatatccacgccaagattttcatcgatgtcgagatc 1230

                     
Query: 419  gatgggcac 427
            |||||||||
Sbjct: 1229 gatgggcac 1221
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>gb|AF216316.1| Oryza sativa MAP kinase 2 mRNA, complete cds
          Length = 1697

 Score =  101 bits (51), Expect = 2e-18
 Identities = 156/189 (82%), Gaps = 4/189 (2%)
 Strand = Plus / Minus

                                                                        
Query: 241  aagatttaaaccaagaacgaacatgtgaagaccctggtgtggcacactgctgtcacatgt 300
            |||||||| || || ||| |||||||||||| | | |||| ||||  |||  ||||||||
Sbjct: 1272 aagatttatacaaaaaaccaacatgtgaagatcttagtgtagcacgttgccttcacatgt 1213

                                                                        
Query: 301  tcattcctgcttgtcacatattcaccatcctgg--cggcctcggggtgatactggagcat 358
            || ||| ||| ||||||||||||||  |||||   |  |||| |||||||| ||||||||
Sbjct: 1212 tcgttcttgcctgtcacatattcac--tcctgcaacaacctctgggtgatagtggagcat 1155

                                                                        
Query: 359  ctcctgccacaacatttcccggatcatatctgtgccaatgttttcatctatgtcaagatc 418
            ||||||||||| ||| ||||||||||||||   |||||  |||||||| ||||| |||||
Sbjct: 1154 ctcctgccacatcatctcccggatcatatccacgccaagattttcatcgatgtcgagatc 1095

                     
Query: 419  gatgggcac 427
            |||||||||
Sbjct: 1094 gatgggcac 1086
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  101 bits (51), Expect = 2e-18
 Identities = 156/189 (82%), Gaps = 4/189 (2%)
 Strand = Plus / Minus

                                                                            
Query: 241      aagatttaaaccaagaacgaacatgtgaagaccctggtgtggcacactgctgtcacatgt 300
                |||||||| || || ||| |||||||||||| | | |||| ||||  |||  ||||||||
Sbjct: 28886315 aagatttatacaaaaaaccaacatgtgaagatcttagtgtagcacgttgccttcacatgt 28886256

                                                                            
Query: 301      tcattcctgcttgtcacatattcaccatcctgg--cggcctcggggtgatactggagcat 358
                || ||| ||| ||||||||||||||  |||||   |  |||| |||||||| ||||||||
Sbjct: 28886255 tcgttcttgcctgtcacatattcac--tcctgcaacaacctctgggtgatagtggagcat 28886198

                                                                            
Query: 359      ctcctgccacaacatttcccggatcatatctgtgccaatgttttcatctatgtcaagatc 418
                ||||||||||| ||| ||||||||||||||   |||||  |||||||| ||||| |||||
Sbjct: 28886197 ctcctgccacatcatctcccggatcatatccacgccaagattttcatcgatgtcgagatc 28886138

                         
Query: 419      gatgggcac 427
                |||||||||
Sbjct: 28886137 gatgggcac 28886129
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>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0468G03
          Length = 143918

 Score =  101 bits (51), Expect = 2e-18
 Identities = 156/189 (82%), Gaps = 4/189 (2%)
 Strand = Plus / Minus

                                                                         
Query: 241   aagatttaaaccaagaacgaacatgtgaagaccctggtgtggcacactgctgtcacatgt 300
             |||||||| || || ||| |||||||||||| | | |||| ||||  |||  ||||||||
Sbjct: 36359 aagatttatacaaaaaaccaacatgtgaagatcttagtgtagcacgttgccttcacatgt 36300

                                                                         
Query: 301   tcattcctgcttgtcacatattcaccatcctgg--cggcctcggggtgatactggagcat 358
             || ||| ||| ||||||||||||||  |||||   |  |||| |||||||| ||||||||
Sbjct: 36299 tcgttcttgcctgtcacatattcac--tcctgcaacaacctctgggtgatagtggagcat 36242

                                                                         
Query: 359   ctcctgccacaacatttcccggatcatatctgtgccaatgttttcatctatgtcaagatc 418
             ||||||||||| ||| ||||||||||||||   |||||  |||||||| ||||| |||||
Sbjct: 36241 ctcctgccacatcatctcccggatcatatccacgccaagattttcatcgatgtcgagatc 36182

                      
Query: 419   gatgggcac 427
             |||||||||
Sbjct: 36181 gatgggcac 36173
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>dbj|AK071376.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093O04, full
            insert sequence
          Length = 1692

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 116/137 (84%), Gaps = 4/137 (2%)
 Strand = Plus / Minus

                                                                        
Query: 293  tcacatgttcattcctgcttgtcacatattcaccatcctg--gcggcctcggggtgatac 350
            |||||||||| ||| ||| ||||||||||||||  |||||   |  |||| |||||||| 
Sbjct: 1321 tcacatgttcgttcttgcctgtcacatattcac--tcctgcaacaacctctgggtgatag 1264

                                                                        
Query: 351  tggagcatctcctgccacaacatttcccggatcatatctgtgccaatgttttcatctatg 410
            ||||||||||||||||||| ||| ||||||||||||||   |||||  |||||||| |||
Sbjct: 1263 tggagcatctcctgccacatcatctcccggatcatatccacgccaagattttcatcgatg 1204

                             
Query: 411  tcaagatcgatgggcac 427
            || ||||||||||||||
Sbjct: 1203 tcgagatcgatgggcac 1187
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>gb|BT016743.1| Zea mays clone Contig576 mRNA sequence
          Length = 1656

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                        
Query: 354  agcatctcctgccacaacatttcccggatcatatctgtgccaatgttttcatctatgtca 413
            |||||||||||||||| ||||||||||||||| |||| ||  |||||||| |||||||| 
Sbjct: 1219 agcatctcctgccacatcatttcccggatcatctctgagctgatgttttcgtctatgtcc 1160

                          
Query: 414  agatcgatgggcac 427
            ||||||||||||||
Sbjct: 1159 agatcgatgggcac 1146
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>gb|AY105935.1| Zea mays PCO126466 mRNA sequence
          Length = 1697

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                        
Query: 354  agcatctcctgccacaacatttcccggatcatatctgtgccaatgttttcatctatgtca 413
            |||||||||||||||| ||||||||||||||| |||| ||  |||||||| |||||||| 
Sbjct: 1313 agcatctcctgccacatcatttcccggatcatctctgagctgatgttttcgtctatgtcc 1254

                          
Query: 414  agatcgatgggcac 427
            ||||||||||||||
Sbjct: 1253 agatcgatgggcac 1240
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>gb|DQ295030.1| Zea mays putative MAPK mRNA, complete cds
          Length = 1113

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                        
Query: 354  agcatctcctgccacaacatttcccggatcatatctgtgccaatgttttcatctatgtca 413
            |||||||||||||||| ||||||||||||||| |||| |   |||||||| |||||||| 
Sbjct: 1070 agcatctcctgccacatcatttcccggatcatctctgagttgatgttttcgtctatgtcc 1011

                          
Query: 414  agatcgatgggcac 427
            ||||||||||||||
Sbjct: 1010 agatcgatgggcac 997
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>ref|XM_464163.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1549

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                        
Query: 342  gggtgatactggagcatctcctgccacaacatttcccggatcatatctgtgccaatgttt 401
            ||||| || ||||||||||| ||||||| |||||||| |||||||||||  |  ||||| 
Sbjct: 1262 gggtggtagtggagcatctcgtgccacatcatttccctgatcatatctgcactgatgttc 1203

                                      
Query: 402  tcatctatgtcaagatcgatgggcac 427
            || |||||||| |||||||| |||||
Sbjct: 1202 tcgtctatgtccagatcgataggcac 1177
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>gb|AF216317.1| Oryza sativa MAP kinase 3 mRNA, complete cds
          Length = 1545

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                        
Query: 342  gggtgatactggagcatctcctgccacaacatttcccggatcatatctgtgccaatgttt 401
            ||||| || ||||||||||| ||||||| |||||||| |||||||||||  |  ||||| 
Sbjct: 1249 gggtggtagtggagcatctcgtgccacatcatttccctgatcatatctgcactgatgttc 1190

                                      
Query: 402  tcatctatgtcaagatcgatgggcac 427
            || |||||||| |||||||| |||||
Sbjct: 1189 tcgtctatgtccagatcgataggcac 1164
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                           
Query: 342     gggtgatactggagcatctcctgccacaacatttcccggatcatatctgtgccaatgttt 401
               ||||| || ||||||||||| ||||||| |||||||| |||||||||||  |  ||||| 
Sbjct: 2643341 gggtggtagtggagcatctcgtgccacatcatttccctgatcatatctgcactgatgttc 2643400

                                         
Query: 402     tcatctatgtcaagatcgatgggcac 427
               || |||||||| |||||||| |||||
Sbjct: 2643401 tcgtctatgtccagatcgataggcac 2643426
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>gb|AF241166.1|AF241166 Oryza sativa MAP kinase MAPK2 mRNA, complete cds
          Length = 1544

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                        
Query: 342  gggtgatactggagcatctcctgccacaacatttcccggatcatatctgtgccaatgttt 401
            ||||| || ||||||||||| ||||||| |||||||| |||||||||||  |  ||||| 
Sbjct: 1239 gggtggtagtggagcatctcgtgccacatcatttccctgatcatatctgcactgatgttc 1180

                                      
Query: 402  tcatctatgtcaagatcgatgggcac 427
            || |||||||| |||||||| |||||
Sbjct: 1179 tcgtctatgtccagatcgataggcac 1154
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>dbj|AP005191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0479D12
          Length = 148362

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                         
Query: 342   gggtgatactggagcatctcctgccacaacatttcccggatcatatctgtgccaatgttt 401
             ||||| || ||||||||||| ||||||| |||||||| |||||||||||  |  ||||| 
Sbjct: 45563 gggtggtagtggagcatctcgtgccacatcatttccctgatcatatctgcactgatgttc 45622

                                       
Query: 402   tcatctatgtcaagatcgatgggcac 427
             || |||||||| |||||||| |||||
Sbjct: 45623 tcgtctatgtccagatcgataggcac 45648
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>dbj|AK119650.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-G10, full
            insert sequence
          Length = 1549

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                        
Query: 342  gggtgatactggagcatctcctgccacaacatttcccggatcatatctgtgccaatgttt 401
            ||||| || ||||||||||| ||||||| |||||||| |||||||||||  |  ||||| 
Sbjct: 1262 gggtggtagtggagcatctcgtgccacatcatttccctgatcatatctgcactgatgttc 1203

                                      
Query: 402  tcatctatgtcaagatcgatgggcac 427
            || |||||||| |||||||| |||||
Sbjct: 1202 tcgtctatgtccagatcgataggcac 1177
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>gb|BT018644.1| Zea mays clone EL01N0505B01.d mRNA sequence
          Length = 1630

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 337  cctcggggtgatactggagcatctcctgccacaacatttcccggatcat 385
            |||||||||| || |||| |||||||||||||| ||| |||| ||||||
Sbjct: 1309 cctcggggtggtagtggatcatctcctgccacatcatctccctgatcat 1261
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>gb|AY107930.1| Zea mays PCO133201 mRNA sequence
          Length = 617

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 337 cctcggggtgatactggagcatctcctgccacaacatttcccggatcat 385
           |||||||||| || |||| |||||||||||||| ||| |||| ||||||
Sbjct: 231 cctcggggtggtagtggatcatctcctgccacatcatctccctgatcat 183
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>emb|BX470150.13| Zebrafish DNA sequence from clone DKEY-164K14 in linkage group 23,
              complete sequence
          Length = 209342

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 260    aacatgtgaagaccctggtgtggcac 285
              ||||||||||||| ||||||||||||
Sbjct: 153578 aacatgtgaagactctggtgtggcac 153553
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>ref|XM_239684.3| PREDICTED: Rattus norvegicus similar to Myosin XVIIIB (Myosin 18B)
            (LOC304551), mRNA
          Length = 8496

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 325  ccatcctggcggcctcggggt 345
            |||||||||||||||||||||
Sbjct: 2333 ccatcctggcggcctcggggt 2313
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 231     aattgcattaaagatttaaa 250
               ||||||||||||||||||||
Sbjct: 1613681 aattgcattaaagatttaaa 1613662
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>ref|XM_585790.2| PREDICTED: Bos taurus hypothetical LOC508934 (LOC508934), mRNA
          Length = 1057

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 234 tgcattaaagatttaaacca 253
           ||||||||||||||||||||
Sbjct: 329 tgcattaaagatttaaacca 348
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>gb|AC161008.4| Pan troglodytes BAC clone CH251-634F15 from chromosome 7, complete
              sequence
          Length = 208418

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 382    tcatatctgtgccaatgttt 401
              ||||||||||||||||||||
Sbjct: 170050 tcatatctgtgccaatgttt 170069
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>gb|AC147300.3| Pan troglodytes BAC clone RP43-56D24 from 7, complete sequence
          Length = 200924

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   tcatatctgtgccaatgttt 401
             ||||||||||||||||||||
Sbjct: 46488 tcatatctgtgccaatgttt 46469
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>gb|AC121572.2| Mus musculus BAC clone RP23-234P16 from 5, complete sequence
          Length = 136697

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 384  atatctgtgccaatgttttcatctatgt 411
            ||||||||| |||||||||||| |||||
Sbjct: 5861 atatctgtggcaatgttttcatgtatgt 5834
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>gb|AC004015.1| Homo sapiens BAC clone CTA-333F24 from 7, complete sequence
          Length = 144239

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   tcatatctgtgccaatgttt 401
             ||||||||||||||||||||
Sbjct: 44154 tcatatctgtgccaatgttt 44173
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 231     aattgcattaaagatttaaa 250
               ||||||||||||||||||||
Sbjct: 1599309 aattgcattaaagatttaaa 1599290
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 231     aattgcattaaagatttaaa 250
               ||||||||||||||||||||
Sbjct: 1602999 aattgcattaaagatttaaa 1602980
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>gb|AC161936.2| Pan troglodytes BAC clone CH251-175C18 from chromosome 7, complete
             sequence
          Length = 159071

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   tcatatctgtgccaatgttt 401
             ||||||||||||||||||||
Sbjct: 84022 tcatatctgtgccaatgttt 84041
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>gb|AC008446.5| Homo sapiens chromosome 5 clone CTC-340A15, complete sequence
          Length = 152232

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   taattgcattaaagatttaa 249
             ||||||||||||||||||||
Sbjct: 65217 taattgcattaaagatttaa 65198
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>gb|AC113052.10| Mus musculus chromosome 5, clone RP23-250D22, complete sequence
          Length = 193698

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 384  atatctgtgccaatgttttcatctatgt 411
            ||||||||| |||||||||||| |||||
Sbjct: 8748 atatctgtggcaatgttttcatgtatgt 8775
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>gb|AC106900.3| Homo sapiens BAC clone RP11-796E10 from 2, complete sequence
          Length = 149495

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 181  gtttattgtgcacatattta 200
            ||||||||||||||||||||
Sbjct: 7660 gtttattgtgcacatattta 7679
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 231     aattgcattaaagatttaaa 250
               ||||||||||||||||||||
Sbjct: 1653318 aattgcattaaagatttaaa 1653299
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>gb|AC155253.1| Mus musculus BAC clone RP24-172G9 from 17, complete sequence
          Length = 160193

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    agtagtccatatatactacc 145
              ||||||||||||||||||||
Sbjct: 154908 agtagtccatatatactacc 154889
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>emb|AL132801.5|CNS01DTN Human chromosome 14 DNA sequence BAC R-661D19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 168624

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     attacaacttacacaagctt 79
              ||||||||||||||||||||
Sbjct: 143335 attacaacttacacaagctt 143354
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>emb|CT030652.14| Mouse DNA sequence from clone RP23-48G20 on chromosome 17, complete
             sequence
          Length = 221351

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   agtagtccatatatactacc 145
             ||||||||||||||||||||
Sbjct: 96658 agtagtccatatatactacc 96639
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>gb|AC163711.3| Gallus gallus BAC clone CH261-27J21 from chromosome ul, complete sequence
          Length = 232951

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 280    tggcacactgctgtcacatgttca 303
              ||||||||||||||| ||||||||
Sbjct: 206964 tggcacactgctgtctcatgttca 206941
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 231     aattgcattaaagatttaaa 250
               ||||||||||||||||||||
Sbjct: 1963265 aattgcattaaagatttaaa 1963284
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>gb|AC149588.4| Mus musculus BAC clone RP23-366I10 from 15, complete sequence
          Length = 200656

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   aattgcattaaagatttaaa 250
             ||||||||||||||||||||
Sbjct: 53754 aattgcattaaagatttaaa 53735
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>emb|AL929147.7| Mouse DNA sequence from clone RP23-429P18 on chromosome 2, complete
              sequence
          Length = 155602

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    ataattgcattaaagattta 248
              ||||||||||||||||||||
Sbjct: 131006 ataattgcattaaagattta 130987
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 231     aattgcattaaagatttaaa 250
               ||||||||||||||||||||
Sbjct: 2125207 aattgcattaaagatttaaa 2125188
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>emb|AL645905.11| Mouse DNA sequence from clone RP23-19M18 on chromosome 11, complete
             sequence
          Length = 99317

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    atgcaggggaaaaaagaaga 60
             ||||||||||||||||||||
Sbjct: 63791 atgcaggggaaaaaagaaga 63772


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,254,217
Number of Sequences: 3902068
Number of extensions: 4254217
Number of successful extensions: 75480
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75285
Number of HSP's gapped (non-prelim): 193
length of query: 428
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 406
effective length of database: 17,147,199,772
effective search space: 6961763107432
effective search space used: 6961763107432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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