ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal39f20 |
|---|---|
| Clone Library Name | barley_pub |
>CG146_ARATH (Q93VG8) UPF0326 protein At4g17486| Length = 224 Score = 102 bits (253), Expect = 2e-21 Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 1/102 (0%) Frame = -1 Query: 728 KNCNHFTADVCKRLTGKPTPGWVNRLARLGSVCNCVLPENIKVSAVRDETAHLEFSD-DD 552 KNCNHFT +VC +LTGKP PGW+NRLAR+GS CNC+LPE+I+++AV LEFSD D+ Sbjct: 123 KNCNHFTEEVCLQLTGKPIPGWINRLARVGSFCNCLLPESIQLTAVSALPERLEFSDEDE 182 Query: 551 LESDTSMVDDSDIGDLDHLLTTPNSDVIPPKDKTLTPGRESL 426 S+ S V D + G HL+ + +++ ++K + RE + Sbjct: 183 SNSEASSVSDEE-GSEQHLINVADREIVYLQNKPVRLTREEI 223
>HAG1_SCHPO (Q8X1T0) UPF0326 protein hag1| Length = 201 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 4/74 (5%) Frame = -1 Query: 728 KNCNHFTADVCKRLTGKPTPGWVNRLARLG----SVCNCVLPENIKVSAVRDETAHLEFS 561 +NCNHFT LTG P P ++NR++R+G ++ N +L K ++ D+++ S Sbjct: 103 RNCNHFTNAAAIELTGSPIPSFLNRISRIGLAFPTITNALLQHGQKNTSDVDDSSD---S 159 Query: 560 DDDLESDTSMVDDS 519 D++ +T +V S Sbjct: 160 SSDVDEETLIVSKS 173
>CG146_PONPY (Q5R456) UPF0326 protein CGI-146 homolog| Length = 194 Score = 40.4 bits (93), Expect = 0.006 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Frame = -1 Query: 728 KNCNHFTADVCKRLTGKPTPGWVNRLARLGS---VCNCVLPENIKVSAVRDETAHLEFSD 558 KNCNHF++ + + L GK P W+NRLA S LP+ A + E D Sbjct: 106 KNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQD 165 Query: 557 DDLESDTSMVDDS 519 + E++ + S Sbjct: 166 ELEEAEDAAASAS 178
>CG146_HUMAN (Q9BSY9) UPF0326 protein CGI-146| Length = 194 Score = 40.4 bits (93), Expect = 0.006 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Frame = -1 Query: 728 KNCNHFTADVCKRLTGKPTPGWVNRLARLGS---VCNCVLPENIKVSAVRDETAHLEFSD 558 KNCNHF++ + + L GK P W+NRLA S LP+ A + E D Sbjct: 106 KNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQD 165 Query: 557 DDLESDTSMVDDS 519 + E++ + S Sbjct: 166 ELEEAEDAAASAS 178
>CG146_MOUSE (Q9D291) UPF0326 protein CGI-146 homolog| Length = 194 Score = 40.0 bits (92), Expect = 0.007 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = -1 Query: 728 KNCNHFTADVCKRLTGKPTPGWVNRLARLGS---VCNCVLPENIKVSAVRDETAHLEFSD 558 KNCNHF++ + + L GK P W+NRLA S LP+ A + E D Sbjct: 106 KNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQD 165 Query: 557 DDLESD 540 + E++ Sbjct: 166 ELEEAE 171
>VACA2_HELPY (Q48245) Vacuolating cytotoxin precursor| Length = 1287 Score = 34.3 bits (77), Expect = 0.40 Identities = 23/74 (31%), Positives = 35/74 (47%) Frame = +3 Query: 27 QHTKSSLSILYLHNKTIVNRHEINPTASYTNTIQLHSTLKNNQQLQSTMHATISHVPCWL 206 +H SSL L L N I+N +N + +TN I S K Q L+ A++ L Sbjct: 951 EHKTSSLQTLSLSNAMILNSRLVNLSRRHTNNID--SFAKRLQALKDQRFASLESAAEVL 1008 Query: 207 TWPSPQLDKPHPLW 248 +P+ +KP +W Sbjct: 1009 YQFAPKYEKPTNVW 1022
>FGFR1_RAT (Q04589) Basic fibroblast growth factor receptor 1 precursor (EC| 2.7.10.1) (FGFR-1) (bFGF-R) (MFR) Length = 822 Score = 33.1 bits (74), Expect = 0.90 Identities = 21/69 (30%), Positives = 29/69 (42%) Frame = +3 Query: 183 ISHVPCWLTWPSPQLDKPHPLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGTTAKI 362 +SH WLT ++P + PLY+ I IY S V + +I K +GT Sbjct: 349 LSHHSAWLTVLEALEERP-AVMTSPLYLEIIIYCTGAFLISCMVGSVIIYKMKSGTKKSD 407 Query: 363 SHPQQTTQK 389 H Q K Sbjct: 408 FHSQMAVHK 416
>ATG18_CANAL (Q5ABA6) Autophagy-related protein 18| Length = 558 Score = 32.7 bits (73), Expect = 1.2 Identities = 17/62 (27%), Positives = 32/62 (51%) Frame = -1 Query: 623 VLPENIKVSAVRDETAHLEFSDDDLESDTSMVDDSDIGDLDHLLTTPNSDVIPPKDKTLT 444 +L E + S ++T ++ + ++ E DDSD+ D D + + +VIP K + L+ Sbjct: 344 ILEEETEGSQSNEQTKSIKRNSEEFEDIRDDGDDSDVDDEDGDIDDESLEVIPAKQRKLS 403 Query: 443 PG 438 G Sbjct: 404 QG 405
>VACA_HELPY (P55981) Vacuolating cytotoxin precursor| Length = 1290 Score = 32.7 bits (73), Expect = 1.2 Identities = 22/74 (29%), Positives = 35/74 (47%) Frame = +3 Query: 27 QHTKSSLSILYLHNKTIVNRHEINPTASYTNTIQLHSTLKNNQQLQSTMHATISHVPCWL 206 +H SSL L L N I+N +N + +TN I S + Q L+ A++ L Sbjct: 955 EHKTSSLQTLSLSNAMILNSRLVNLSRRHTNNID--SFAQRLQALKDQKFASLESAAEVL 1012 Query: 207 TWPSPQLDKPHPLW 248 +P+ +KP +W Sbjct: 1013 YQFAPKYEKPTNVW 1026
>FGFR1_HUMAN (P11362) Basic fibroblast growth factor receptor 1 precursor (EC| 2.7.10.1) (FGFR-1) (bFGF-R) (Fms-like tyrosine kinase 2) (c-fgr) (CD331 antigen) Length = 822 Score = 32.7 bits (73), Expect = 1.2 Identities = 20/69 (28%), Positives = 29/69 (42%) Frame = +3 Query: 183 ISHVPCWLTWPSPQLDKPHPLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGTTAKI 362 +SH WLT ++P + PLY+ I IY S V + ++ K +GT Sbjct: 349 LSHHSAWLTVLEALEERP-AVMTSPLYLEIIIYCTGAFLISCMVGSVIVYKMKSGTKKSD 407 Query: 363 SHPQQTTQK 389 H Q K Sbjct: 408 FHSQMAVHK 416
>YFGC_SHIFL (P66949) Hypothetical protein yfgC precursor| Length = 487 Score = 32.0 bits (71), Expect = 2.0 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Frame = +3 Query: 75 IVNRHEINPTASYTNTIQLHSTL----KNNQQLQSTMHATISHV-PCWLTWPSPQLDKPH 239 ++N EIN A + + LHS L N QL S M ISHV L + Sbjct: 98 LINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSA 157 Query: 240 PLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGT-TAKISHPQQTTQKQVMLFINNL 416 PL ++ +I + +A+ G +++ T+ GT IS QQ Q+ + I L Sbjct: 158 PLTWVGALGSILLAMASPQAGMAALTGTL-----AGTRQGMISFTQQNEQEADRIGIQVL 212 Query: 417 KQ 422 ++ Sbjct: 213 QR 214
>YFGC_ECOLI (P66948) Hypothetical protein yfgC precursor| Length = 487 Score = 32.0 bits (71), Expect = 2.0 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Frame = +3 Query: 75 IVNRHEINPTASYTNTIQLHSTL----KNNQQLQSTMHATISHV-PCWLTWPSPQLDKPH 239 ++N EIN A + + LHS L N QL S M ISHV L + Sbjct: 98 LINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSA 157 Query: 240 PLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGT-TAKISHPQQTTQKQVMLFINNL 416 PL ++ +I + +A+ G +++ T+ GT IS QQ Q+ + I L Sbjct: 158 PLTWVGALGSILLAMASPQAGMAALTGTL-----AGTRQGMISFTQQNEQEADRIGIQVL 212 Query: 417 KQ 422 ++ Sbjct: 213 QR 214
>FGFR1_MOUSE (P16092) Basic fibroblast growth factor receptor 1 precursor (EC| 2.7.10.1) (FGFR-1) (bFGF-R) (MFR) Length = 822 Score = 32.0 bits (71), Expect = 2.0 Identities = 20/69 (28%), Positives = 29/69 (42%) Frame = +3 Query: 183 ISHVPCWLTWPSPQLDKPHPLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGTTAKI 362 +SH WLT ++P + PLY+ I IY S + + +I K +GT Sbjct: 349 LSHHSAWLTVLEALEERP-AVMTSPLYLEIIIYCTGAFLISCMLGSVIIYKMKSGTKKSD 407 Query: 363 SHPQQTTQK 389 H Q K Sbjct: 408 FHSQMAVHK 416
>DOPO_MOUSE (Q64237) Dopamine beta-hydroxylase precursor (EC 1.14.17.1)| (Dopamine beta-monooxygenase) Length = 621 Score = 32.0 bits (71), Expect = 2.0 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +3 Query: 171 MHATISHVPCWLTWPSPQLDKPHPLWYLPLYININIYVAATLTGS 305 M A +SH PCW + PSP + + ++ + I + I VAA L GS Sbjct: 1 MQAHLSHQPCWSSLPSPSVREAASMYGTAVAIFLVILVAA-LRGS 44
>YFGC_SALTY (P66950) Hypothetical protein yfgC precursor| Length = 487 Score = 31.6 bits (70), Expect = 2.6 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Frame = +3 Query: 75 IVNRHEINPTASYTNTIQLHSTL----KNNQQLQSTMHATISHV-PCWLTWPSPQLDKPH 239 ++N EIN A + + LHS L N QL S M ISHV L + Sbjct: 98 LINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSA 157 Query: 240 PLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGT-TAKISHPQQTTQKQVMLFINNL 416 PL ++ +I + +A+ G +++ T+ GT IS QQ Q+ + I L Sbjct: 158 PLTWVGALGSILLAMASPQAGMAALTGTL-----AGTRQGMISFTQQNEQEADRIGIQVL 212 Query: 417 KQ 422 ++ Sbjct: 213 QR 214
>YFGC_SALTI (P66951) Hypothetical protein yfgC precursor| Length = 487 Score = 31.6 bits (70), Expect = 2.6 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Frame = +3 Query: 75 IVNRHEINPTASYTNTIQLHSTL----KNNQQLQSTMHATISHV-PCWLTWPSPQLDKPH 239 ++N EIN A + + LHS L N QL S M ISHV L + Sbjct: 98 LINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSA 157 Query: 240 PLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGT-TAKISHPQQTTQKQVMLFINNL 416 PL ++ +I + +A+ G +++ T+ GT IS QQ Q+ + I L Sbjct: 158 PLTWVGALGSILLAMASPQAGMAALTGTL-----AGTRQGMISFTQQNEQEADRIGIQVL 212 Query: 417 KQ 422 ++ Sbjct: 213 QR 214
>YFGC_ECO57 (Q8XAD2) Hypothetical protein yfgC precursor| Length = 487 Score = 31.6 bits (70), Expect = 2.6 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Frame = +3 Query: 75 IVNRHEINPTASYTNTIQLHSTL----KNNQQLQSTMHATISHV-PCWLTWPSPQLDKPH 239 ++N EIN A + + LHS L N QL S M ISHV L + Sbjct: 98 LINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRNA 157 Query: 240 PLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGT-TAKISHPQQTTQKQVMLFINNL 416 PL ++ +I + +A+ G +++ T+ GT IS QQ Q+ + I L Sbjct: 158 PLTWVGALGSILLAMASPQAGMAALTGTL-----AGTRQGMISFTQQNEQEADRIGIQVL 212 Query: 417 KQ 422 ++ Sbjct: 213 QR 214
>TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TRIP12)| Length = 1992 Score = 30.4 bits (67), Expect = 5.8 Identities = 20/65 (30%), Positives = 33/65 (50%) Frame = +3 Query: 57 YLHNKTIVNRHEINPTASYTNTIQLHSTLKNNQQLQSTMHATISHVPCWLTWPSPQLDKP 236 YL++ + EI PT+ + N+ T K N+QLQ + ++P WLT +L K Sbjct: 1487 YLYDNAMCK--EIIPTSEFINS---KLTAKANRQLQDPLVIMTGNIPTWLT----ELGKT 1537 Query: 237 HPLWY 251 P ++ Sbjct: 1538 CPFFF 1542
>GLRA1_BRARE (O93430) Glycine receptor alphaZ1 chain precursor| Length = 444 Score = 30.0 bits (66), Expect = 7.6 Identities = 14/64 (21%), Positives = 33/64 (51%) Frame = +3 Query: 327 IRKEDTGTTAKISHPQQTTQKQVMLFINNLKQLQALSSRS*RLVFWGYDVAVWCC*EVIQ 506 I+ + + P++T ++ LFI+ K++ +S + LVF +++ W ++I+ Sbjct: 378 IKGNNNNAPTSTNPPEKTVEEMRKLFISRAKRIDTVSRVAFPLVFLIFNIFYWITYKIIR 437 Query: 507 ITDV 518 D+ Sbjct: 438 SEDI 441
>DPOL_CBEPV (P30319) DNA polymerase (EC 2.7.7.7)| Length = 964 Score = 29.6 bits (65), Expect = 10.0 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +2 Query: 92 NKPNS*LHKYYTAALYSQKQSTVTIN 169 NK N L+ YYT+ALYS+K +TIN Sbjct: 650 NKNNPVLYNYYTSALYSKK---ITIN 672
>CP392_DROME (P82713) Probable cytochrome P450 309a2 (EC 1.14.-.-) (CYPCCCIXA2)| Length = 538 Score = 29.6 bits (65), Expect = 10.0 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +1 Query: 52 SCTYTTKQLSIAMK*TQQLVTQILYSCTLLSKTINSYNQLCTQPS 186 SC + K L + Q + Q++Y LS I Y ++CT P+ Sbjct: 372 SCMASEKSLDFEKLSSLQYLEQVIYESLRLSSLIPQYTKVCTLPT 416 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,604,846 Number of Sequences: 219361 Number of extensions: 2114487 Number of successful extensions: 6687 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 6202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6676 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7536258401 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
