ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal39f12 |
|---|---|
| Clone Library Name | barley_pub |
>SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 Score = 263 bits (673), Expect = 3e-70 Identities = 126/170 (74%), Positives = 143/170 (84%) Frame = -2 Query: 697 FDXKDYLKFYKMGTYWPYTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAA 518 FD DYLKFYK+GTYWPYTPSIQ +FEEGL+N+I RH RLG ATRLAV A Sbjct: 232 FDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEA 291 Query: 517 WGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHL 338 WGLKNCT+KEE S+TVTAV+VPP+ID SEIV+ AW+RYNLSLGLGLNKVAGKVFRIGHL Sbjct: 292 WGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHL 351 Query: 337 GHLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYLSNSTPLIPSRI 188 G++NELQLLGCL GVEM+LKD+GYPV +GSGVAAA+ YL + PLIPSRI Sbjct: 352 GNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
>SGAA_METEX (P55819) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 379 Score = 166 bits (420), Expect = 6e-41 Identities = 89/159 (55%), Positives = 109/159 (68%) Frame = -2 Query: 697 FDXKDYLKFYKMGTYWPYTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAA 518 FD +D K G Y+PYTP + LFEEGL+NV RH LG ATR AVAA Sbjct: 214 FDWEDQKKQNPTG-YFPYTPPLPLLYGLREALACLFEEGLENVYHRHAVLGEATRQAVAA 272 Query: 517 WGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHL 338 WGLK C + E SDTVTA++ P +D+++I+KHA+ RYNL+LG GL++VAGKVFRIGH+ Sbjct: 273 WGLKTCAKSPEWNSDTVTAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHV 332 Query: 337 GHLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYL 221 G LNEL LLG + G EM L D G V GSGVAAA++YL Sbjct: 333 GDLNELSLLGAIAGAEMSLIDNGVKVTPGSGVAAASSYL 371
>SGAA_HYPME (O08374) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 404 Score = 160 bits (404), Expect = 5e-39 Identities = 86/162 (53%), Positives = 106/162 (65%) Frame = -2 Query: 697 FDXKDYLKFYKMGTYWPYTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAA 518 F +D +K G ++PYTP+ Q LF EGLDNV RHTRL + R AV A Sbjct: 228 FSFEDMIKTNDQG-FFPYTPATQLLRGLRTSLDLLFAEGLDNVFARHTRLASGVRAAVDA 286 Query: 517 WGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHL 338 WGLK C ++ + +SDTV+A++VP IDS+ I K A+ RYN S GLGLNKVAGKVFRIGHL Sbjct: 287 WGLKLCAKEPKWYSDTVSAILVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGHL 346 Query: 337 GHLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYLSNS 212 G L+E+ + G L EM LKD G +KLGSG AAA Y S + Sbjct: 347 GMLDEVMIGGALFAAEMALKDNGVNLKLGSGTGAAAEYFSKN 388
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 97.1 bits (240), Expect = 5e-20 Identities = 59/158 (37%), Positives = 84/158 (53%) Frame = -2 Query: 694 DXKDYLKFYKMGTYWPYTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAW 515 D Y K+Y+ PYTPS+ + EEG++N +KRH RL ATR + A Sbjct: 227 DLLAYKKYYEEKKQTPYTPSVNLTYALNVALDLVLEEGIENRVKRHERLAKATRAGLEAM 286 Query: 514 GLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 335 G++ KE S TVT+ P I+ S+ +YN+ + G +AGK+FRIGH+G Sbjct: 287 GIE-LFAKERARSVTVTSAKYPEGIEDSKFRGILSNKYNIVVAGGQKHLAGKIFRIGHMG 345 Query: 334 HLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYL 221 E ++L L VE+ LK++G+ VK SGV A L Sbjct: 346 ICGEKEVLATLACVELALKELGFEVK-ESGVEVAKEVL 382
>DHSS_ANACY (P16421) Soluble hydrogenase 42 kDa subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 383 Score = 82.0 bits (201), Expect = 2e-15 Identities = 48/146 (32%), Positives = 82/146 (56%), Gaps = 1/146 (0%) Frame = -2 Query: 649 PYTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDT 470 P+TP + + +EGL+++ RH R ATR A+ A L +E S Sbjct: 240 PFTPPVNLMVALHTTLGMMKKEGLESIFTRHERQKNATRAAMKALNLP-LFAADECASPA 298 Query: 469 VTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVE 290 +TAV P +++ +I KR++++L G + ++ K+FR+GHLG +++ +L C+ +E Sbjct: 299 ITAVATPG-MEADKIRSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSDRDILSCIASLE 357 Query: 289 MVLKDIGYP-VKLGSGVAAAAAYLSN 215 +VL ++G+ G+GVAAAA SN Sbjct: 358 VVLLELGHENFNSGAGVAAAARVFSN 383
>DHSS_SYNP1 (P14776) Soluble hydrogenase, small subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 384 Score = 75.5 bits (184), Expect = 1e-13 Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 1/147 (0%) Frame = -2 Query: 649 PYTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDT 470 P+TP + + EGL+ + +RH RL ATR A+ A L + S Sbjct: 240 PFTPPVNLFFALKTALEMMQAEGLEAIFQRHQRLMQATRAAMKALNLP-LYAADSCASPA 298 Query: 469 VTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVE 290 +TAV P +++ I KR++++L G + + G++FRIGHLG + + +L + +E Sbjct: 299 ITAVA-PQGVEAENIRSLMKKRFDIALAGGQDHLKGQIFRIGHLGFVGDRDILAAVSALE 357 Query: 289 MVLKDIGYP-VKLGSGVAAAAAYLSNS 212 VL ++GY G+GVAAA+ LS + Sbjct: 358 AVLAELGYTNFTPGAGVAAASRVLSTA 384
>PUCG_BACSU (O32148) Purine catabolism protein pucG (EC 2.-.-.-)| Length = 416 Score = 45.4 bits (106), Expect = 2e-04 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 1/127 (0%) Frame = -2 Query: 589 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 410 EEGL+ +RH A + A GL+ + VT V +P ID + Sbjct: 285 EEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMP-VVTCVEIPGGIDGESVRDMLL 343 Query: 409 KRYNLSLGLGLNKVAGKVFRIGHLGH-LNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAA 233 ++ + + +AGK++RIG +G+ + +L L G+E VL ++ G + AA Sbjct: 344 AQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNAGIEAGKALQAA 403 Query: 232 AAYLSNS 212 N+ Sbjct: 404 LDVYENA 410
>SPYA_RAT (P09139) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 44.7 bits (104), Expect = 3e-04 Identities = 27/86 (31%), Positives = 40/86 (46%) Frame = -2 Query: 589 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 410 E+GL+N +RH + GLK + E T+T V VP + +IV + Sbjct: 303 EQGLENSWRRHREATAHLHKCLRELGLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVL 362 Query: 409 KRYNLSLGLGLNKVAGKVFRIGHLGH 332 +N+ + GL KV RIG LG+ Sbjct: 363 DHFNIEISGGLGPSEDKVLRIGLLGY 388
>SPYA_CALJA (P31029) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 44.3 bits (103), Expect = 4e-04 Identities = 27/85 (31%), Positives = 41/85 (48%) Frame = -2 Query: 589 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 410 E+GL+N ++H + A GL+ + TVT V VP D +IV + Sbjct: 303 EQGLENSWRKHREAAAYLHGRLQALGLRLFVKDPALRLPTVTTVAVPTGYDWRDIVSYLI 362 Query: 409 KRYNLSLGLGLNKVAGKVFRIGHLG 335 +R+ + + GL GKV RIG +G Sbjct: 363 ERFGIEITGGLGPSTGKVLRIGLMG 387
>SPYA_HUMAN (P21549) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 42.0 bits (97), Expect = 0.002 Identities = 27/85 (31%), Positives = 40/85 (47%) Frame = -2 Query: 589 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 410 E+GL+N ++H + A GL+ + TVT V VP D +IV + Sbjct: 281 EQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVI 340 Query: 409 KRYNLSLGLGLNKVAGKVFRIGHLG 335 +++ + GL GKV RIG LG Sbjct: 341 DHFDIEIMGGLGPSTGKVLRIGLLG 365
>SPYA_FELCA (P41689) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/85 (30%), Positives = 40/85 (47%) Frame = -2 Query: 589 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 410 E+GL+N ++H + + GL+ + TVT V VP D +IV + Sbjct: 303 EQGLENSWRQHREVTAYLHGRLQGLGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVNYVM 362 Query: 409 KRYNLSLGLGLNKVAGKVFRIGHLG 335 +++ + GL GKV RIG LG Sbjct: 363 DHFDIEITGGLGPSMGKVLRIGLLG 387
>SGAT_MAIZE (P84187) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Fragments) Length = 136 Score = 40.0 bits (92), Expect = 0.007 Identities = 28/62 (45%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -2 Query: 430 EIVKHAW---KRYNLSLGLGLNKVA-GKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP 263 E+ AW RYNLSLGLGLNKVA GKVFR D+GYP Sbjct: 99 ELAVEAWGLSNRYNLSLGLGLNKVAGGKVFR------------------------DVGYP 134 Query: 262 VK 257 VK Sbjct: 135 VK 136
>SPYA_RABIT (P31030) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 37.4 bits (85), Expect = 0.044 Identities = 25/85 (29%), Positives = 38/85 (44%) Frame = -2 Query: 589 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 410 E+GL+ +RH + + GL+ + TVT V+VP +IV + Sbjct: 281 EQGLEKSWQRHREVAQHLYRRLQELGLQLFVKDPALRLPTVTTVIVPASYRWRDIVSYVM 340 Query: 409 KRYNLSLGLGLNKVAGKVFRIGHLG 335 + + + GL A KV RIG LG Sbjct: 341 HHFGIEITGGLGPSADKVLRIGLLG 365
>SPYA_MOUSE (O35423) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 413 Score = 35.8 bits (81), Expect = 0.13 Identities = 24/86 (27%), Positives = 38/86 (44%) Frame = -2 Query: 589 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 410 E GL+N +RH + GLK + E T+T V Y + +IV + Sbjct: 303 ERGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTAAGY-NWRDIVSYVL 361 Query: 409 KRYNLSLGLGLNKVAGKVFRIGHLGH 332 +++ + GL +V RIG LG+ Sbjct: 362 DHFSIEISGGLGPTEERVLRIGLLGY 387
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 32.7 bits (73), Expect = 1.1 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +1 Query: 214 NSRGTPPRPPRRCQAS-PGTRCP*APSPPRRG 306 N+R PP PP R G R P P PPRRG Sbjct: 320 NNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRG 351
>CEFD_NOCLA (Q03046) Isopenicillin N epimerase (EC 5.1.1.17)| Length = 398 Score = 32.7 bits (73), Expect = 1.1 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Frame = -2 Query: 592 FEEGLDN--VIKRHTRLGTATRLAVAAW-GLKNCTEKEENFSDTVTAVVVPPYIDSSEIV 422 F+ GL + V +R L TR ++ W GL+ T S +TA +PP D++ + Sbjct: 292 FQAGLGHGRVRERMRELAAFTRERLSGWRGLEPVTPAHPGLSGAMTAFRLPPGTDTAGLR 351 Query: 421 KHAWKRYNLSLGLGLNKVAGKVFRI 347 W R+ + + + L++ G + R+ Sbjct: 352 HGLWDRFRIDVPV-LDRPDGPLLRV 375
>F100A_RAT (Q6AXN0) Protein FAM100A| Length = 176 Score = 31.6 bits (70), Expect = 2.4 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +3 Query: 216 FERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWP 347 F R A+ + +G PM+ S S PP P + S P WP Sbjct: 81 FSRLKASESFHSGGSSGSPMATSATSPPPHFPHATGSFATPSWP 124
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 31.6 bits (70), Expect = 2.4 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +1 Query: 214 NSRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 312 ++RGTPP P R P P P+PPR G+P Sbjct: 740 DARGTPPPAPAR---DPPPPAPSPPAPPRAGDP 769
>YGHE_ECOLI (Q46833) Putative general secretion pathway protein L-type yghE| Length = 286 Score = 29.6 bits (65), Expect = 9.2 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +3 Query: 192 LEGMRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWPI 350 L G + ER A LP+ T Y + T P QPR +W RW + Sbjct: 87 LSAWAGADAERLTVTA---LPAITTYGEPEGNLLTGPWQPRVSYRKQWARWRV 136 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,024,010 Number of Sequences: 219361 Number of extensions: 1574128 Number of successful extensions: 6185 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5496 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6158 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6969622431 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
