>gb|AC106860.6| Homo sapiens BAC clone RP13-488D7 from 4, complete sequence
          Length = 180424

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 192    acagtaataaaatacaaaaaag 213
              ||||||||||||||||||||||
Sbjct: 174943 acagtaataaaatacaaaaaag 174922

>emb|AJ237609.1|BRE237609 Borrelia recurrentis vmpA1 gene, silent copy
          Length = 2152

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 196  taataaaatacaaaaaaggaa 216
            |||||||||||||||||||||
Sbjct: 1510 taataaaatacaaaaaaggaa 1490

>emb|AJ237608.1|BRE237608 Borrelia recurrentis vmpA1 gene, expressed copy
          Length = 1700

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 196  taataaaatacaaaaaaggaa 216
            |||||||||||||||||||||
Sbjct: 1346 taataaaatacaaaaaaggaa 1326

>emb|CR376848.7| Zebrafish DNA sequence from clone CH211-197K23 in linkage group 24,
             complete sequence
          Length = 218909

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   tattttatacagtaataaaat 204
             |||||||||||||||||||||
Sbjct: 66366 tattttatacagtaataaaat 66386

>gb|AC157525.2| Pan troglodytes BAC clone CH251-519D18 from chromosome unknown, complete
              sequence
          Length = 234137

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 185    attttatacagtaataaaata 205
              |||||||||||||||||||||
Sbjct: 126823 attttatacagtaataaaata 126843

>emb|BX571970.20| Zebrafish DNA sequence from clone DKEY-276G11 in linkage group 7,
             complete sequence
          Length = 170614

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 192   acagtaataaaatacaaaaaa 212
             |||||||||||||||||||||
Sbjct: 95853 acagtaataaaatacaaaaaa 95833

>gb|AC102099.14| Mus musculus chromosome 5, clone RP23-52A2, complete sequence
          Length = 235239

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 187   tttatacagtaataaaataca 207
             |||||||||||||||||||||
Sbjct: 86722 tttatacagtaataaaataca 86702

>gb|AC006249.1|AC006249 Homo sapiens chromosome 18, clone hRPK.430_E_17, complete sequence
          Length = 197082

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   attttatacagtaataaaata 205
             |||||||||||||||||||||
Sbjct: 94600 attttatacagtaataaaata 94580

>emb|AL929382.9| Mouse DNA sequence from clone RP23-136C24 on chromosome X, complete
             sequence
          Length = 201060

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 138   aaatatcagcagctaataata 158
             |||||||||||||||||||||
Sbjct: 35780 aaatatcagcagctaataata 35800

>emb|BX664602.11| Zebrafish DNA sequence from clone DKEY-31C18 in linkage group 6, complete
              sequence
          Length = 171498

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 134    aaccaaatatcagcagctaataat 157
              ||||||||||||||| ||||||||
Sbjct: 130984 aaccaaatatcagcatctaataat 130961

>emb|AL645726.22| Mouse DNA sequence from clone RP23-45M23 on chromosome 1, complete
              sequence
          Length = 231347

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 277    acttcatgaacccctgagccatct 300
              ||||||| ||||||||||||||||
Sbjct: 163912 acttcattaacccctgagccatct 163889

>gb|AC128649.5| Homo sapiens 12 BAC RP11-728G4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167071

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   taacttaagaaactttacag 133
             ||||||||||||||||||||
Sbjct: 83350 taacttaagaaactttacag 83331

>emb|BX649406.10| Zebrafish DNA sequence from clone CH211-203N20 in linkage group 4
             Contains two CpG islands, complete sequence
          Length = 141237

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   ttattattttatacagtaat 199
             ||||||||||||||||||||
Sbjct: 31504 ttattattttatacagtaat 31485

>emb|BX004823.23| Zebrafish DNA sequence from clone DKEY-13A3 in linkage group 14, complete
              sequence
          Length = 197683

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 134    aaccaaatatcagcagctaataat 157
              ||||||||||||||| ||||||||
Sbjct: 178955 aaccaaatatcagcatctaataat 178932

>emb|AJ633130.1| Escherichia coli locus of enterocyte effacement, strain 3431-4/86
          Length = 38091

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ttacaaccgagtatcctgca 58
             ||||||||||||||||||||
Sbjct: 23522 ttacaaccgagtatcctgca 23503

>gb|AC128657.2| Homo sapiens 12 BAC RP11-1079J22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 60001

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   taacttaagaaactttacag 133
             ||||||||||||||||||||
Sbjct: 26015 taacttaagaaactttacag 26034

>emb|AL954137.18| Zebrafish DNA sequence from clone CH211-222L21 in linkage group 11,
             complete sequence
          Length = 222163

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   gtaataaaatacaaaaaagg 214
             ||||||||||||||||||||
Sbjct: 92821 gtaataaaatacaaaaaagg 92840

>gb|AC005936.3| Arabidopsis thaliana chromosome 2 clone F5O4 map CIC11A04, complete
             sequence
          Length = 93212

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 102   tacagacatccataacttaagaaa 125
             ||||||||||||||| ||||||||
Sbjct: 47116 tacagacatccataatttaagaaa 47139

>gb|AC018390.5| Homo sapiens chromosome , clone RP11-11E23, complete sequence
          Length = 167130

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    aataaaatacaaaaaaggaa 216
              ||||||||||||||||||||
Sbjct: 100121 aataaaatacaaaaaaggaa 100140

>gb|AC108046.3| Homo sapiens BAC clone RP11-308K2 from 4, complete sequence
          Length = 177483

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 188   ttatacagtaataaaatacaaaaa 211
             |||||||||||||| |||||||||
Sbjct: 93828 ttatacagtaataatatacaaaaa 93851

>gb|AC095063.2| Homo sapiens BAC clone RP11-533K12 from 4, complete sequence
          Length = 153814

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   tattttatacagtaataaaa 203
             ||||||||||||||||||||
Sbjct: 79112 tattttatacagtaataaaa 79131

>gb|AC104185.2| Homo sapiens chromosome 3 clone RP11-268J19, complete sequence
          Length = 165918

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   aataaaatacaaaaaaggaa 216
             ||||||||||||||||||||
Sbjct: 53590 aataaaatacaaaaaaggaa 53571

>gb|AC016194.7| Homo sapiens chromosome 8, clone RP11-24F20, complete sequence
          Length = 146768

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    aataaaatacaaaaaaggaa 216
              ||||||||||||||||||||
Sbjct: 142286 aataaaatacaaaaaaggaa 142267

>gb|AC129342.5| Rattus norvegicus  BAC CH230-229B21 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 224257

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    tgaacccctgagccatcttc 302
              ||||||||||||||||||||
Sbjct: 180448 tgaacccctgagccatcttc 180429

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 120      aagaaactttacagaaccaa 139
                ||||||||||||||||||||
Sbjct: 13844773 aagaaactttacagaaccaa 13844754

>dbj|AP005690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0052I14
          Length = 168285

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    aagaaactttacagaaccaa 139
              ||||||||||||||||||||
Sbjct: 129937 aagaaactttacagaaccaa 129918

>emb|BX000987.6| Zebrafish DNA sequence from clone CH211-130P10 in linkage group 15,
             complete sequence
          Length = 152072

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 134   aaccaaatatcagcagctaataat 157
             ||||||||||||||| ||||||||
Sbjct: 53886 aaccaaatatcagcatctaataat 53909

>gb|AC153997.3| Mus musculus 6 BAC RP24-571G22 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 150676

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   ttattattttatacagtaat 199
             ||||||||||||||||||||
Sbjct: 75852 ttattattttatacagtaat 75871

>emb|AL928830.10| Zebrafish DNA sequence from clone CH211-119E16, complete sequence
          Length = 182614

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 180    ttattattttatacagtaataaaataca 207
              |||| ||||||||||||||||| |||||
Sbjct: 123269 ttataattttatacagtaataatataca 123242

>emb|AL807393.10| Mouse DNA sequence from clone RP23-142A9 on chromosome X, complete
             sequence
          Length = 147187

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 193   cagtaataaaatacaaaaaaggaa 216
             ||||||||||||||| ||||||||
Sbjct: 25397 cagtaataaaatacataaaaggaa 25374


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,437,394
Number of Sequences: 3902068
Number of extensions: 4437394
Number of successful extensions: 92639
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92549
Number of HSP's gapped (non-prelim): 90
length of query: 318
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 296
effective length of database: 17,147,199,772
effective search space: 5075571132512
effective search space used: 5075571132512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)