ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal39f07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC136524.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0474A01, complete sequence Length = 140077 Score = 107 bits (54), Expect = 4e-20 Identities = 78/86 (90%) Strand = Plus / Minus Query: 437 gcgttcatctgatcgaggagtatgaccacggccatggccagcgccggctcgaagtctggc 496 |||| |||||| |||||||| ||||| ||||||||||| ||||||||||||||| | ||| Sbjct: 59966 gcgtgcatctggtcgaggaggatgacgacggccatggcgagcgccggctcgaagcccggc 59907 Query: 497 tccaccatcagccggaacacgtccgg 522 ||||||| |||||||||||||||||| Sbjct: 59906 tccaccaccagccggaacacgtccgg 59881
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 107 bits (54), Expect = 4e-20 Identities = 78/86 (90%) Strand = Plus / Minus Query: 437 gcgttcatctgatcgaggagtatgaccacggccatggccagcgccggctcgaagtctggc 496 |||| |||||| |||||||| ||||| ||||||||||| ||||||||||||||| | ||| Sbjct: 14112411 gcgtgcatctggtcgaggaggatgacgacggccatggcgagcgccggctcgaagcccggc 14112352 Query: 497 tccaccatcagccggaacacgtccgg 522 ||||||| |||||||||||||||||| Sbjct: 14112351 tccaccaccagccggaacacgtccgg 14112326
>dbj|AK058638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-D08, full insert sequence Length = 1230 Score = 107 bits (54), Expect = 4e-20 Identities = 78/86 (90%) Strand = Plus / Minus Query: 437 gcgttcatctgatcgaggagtatgaccacggccatggccagcgccggctcgaagtctggc 496 |||| |||||| |||||||| ||||| ||||||||||| ||||||||||||||| | ||| Sbjct: 719 gcgtgcatctggtcgaggaggatgacgacggccatggcgagcgccggctcgaagcccggc 660 Query: 497 tccaccatcagccggaacacgtccgg 522 ||||||| |||||||||||||||||| Sbjct: 659 tccaccaccagccggaacacgtccgg 634
>gb|AC146577.2| Pan troglodytes BAC clone CH251-189A13 from Y, complete sequence Length = 171643 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 gctagctgcaggcatgcatggct 402 ||||||||||||||||||||||| Sbjct: 163803 gctagctgcaggcatgcatggct 163825
>gb|AC145770.1| Pan troglodytes BAC clone CH251-576K13 from Y, complete sequence Length = 177726 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 380 gctagctgcaggcatgcatggct 402 ||||||||||||||||||||||| Sbjct: 137305 gctagctgcaggcatgcatggct 137283
>dbj|BS000576.2| Pan troglodytes chromosome Y clone:PTB-045N05, complete sequences Length = 190089 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 380 gctagctgcaggcatgcatggct 402 ||||||||||||||||||||||| Sbjct: 142390 gctagctgcaggcatgcatggct 142368
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 gctagctgcaggcatgcatggct 402 ||||||||||||||||||||||| Sbjct: 23375887 gctagctgcaggcatgcatggct 23375909
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 458 atgaccacggccatggccagcg 479 |||||||||||||||||||||| Sbjct: 3619542 atgaccacggccatggccagcg 3619563
>gb|AC138739.8| Mus musculus chromosome 9, clone RP23-380A10, complete sequence Length = 217813 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 cttcctgccccctcttttttc 308 ||||||||||||||||||||| Sbjct: 154715 cttcctgccccctcttttttc 154695
>gb|AE012302.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 210 of 460 of the complete genome Length = 12828 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 ggccatggccagcgccggctc 486 ||||||||||||||||||||| Sbjct: 12387 ggccatggccagcgccggctc 12407
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 ttattttcactaacaaaaaga 90 ||||||||||||||||||||| Sbjct: 2178530 ttattttcactaacaaaaaga 2178550
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 ggccatggccagcgccggctc 486 ||||||||||||||||||||| Sbjct: 2652618 ggccatggccagcgccggctc 2652598
>emb|BX824537.1|CNS0A7TX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH54ZH01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1851 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 tatttattttcactaacaaaa 87 ||||||||||||||||||||| Sbjct: 1329 tatttattttcactaacaaaa 1309
>gb|AC108011.4| Homo sapiens BAC clone RP13-511O19 from 4, complete sequence Length = 81894 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 tctgtatgatttgtgcattga 358 ||||||||||||||||||||| Sbjct: 63732 tctgtatgatttgtgcattga 63712
>dbj|AB054644.1| Sarcophaga peregrina gene for lectin, 5' upstream region and partial cds Length = 3260 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 aaacaaaatgatcggatttac 35 ||||||||||||||||||||| Sbjct: 649 aaacaaaatgatcggatttac 629
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tttattttcactaacaaaaa 88 |||||||||||||||||||| Sbjct: 1645774 tttattttcactaacaaaaa 1645793
>gb|AC107690.10| Mus musculus chromosome 3, clone RP24-349N15, complete sequence Length = 166260 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 acatcctgaatccaaaacatcaca 168 ||||||| |||||||||||||||| Sbjct: 147150 acatccttaatccaaaacatcaca 147127
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 cacggccatggccagcgccg 482 |||||||||||||||||||| Sbjct: 890120 cacggccatggccagcgccg 890139
>gb|AC165441.3| Mus musculus BAC clone RP24-548F24 from chromosome 8, complete sequence Length = 235813 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 cttcctgccccctctttttt 307 |||||||||||||||||||| Sbjct: 206297 cttcctgccccctctttttt 206316
>emb|CT010431.7| Mouse DNA sequence from clone RP23-453M21 on chromosome 13, complete sequence Length = 204148 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 tcctgccccctcttttttcc 309 |||||||||||||||||||| Sbjct: 162877 tcctgccccctcttttttcc 162896
>gb|AC002519.1|HUAC002519 Human Chromosome 16 BAC clone CIT987SK-A-355G7, complete sequence Length = 139958 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 49 gccacatgatctatgtgctatttatttt 76 |||||||| || |||||||||||||||| Sbjct: 108334 gccacatggtcaatgtgctatttatttt 108307
>gb|AC079316.15| Homo sapiens 12 BAC RP11-43D4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178905 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cttcctgccccctctttttt 307 |||||||||||||||||||| Sbjct: 62479 cttcctgccccctctttttt 62460
>gb|AC121910.3| Mus musculus BAC clone RP24-180H14 from chromosome 13, complete sequence Length = 143473 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 tcctgccccctcttttttcc 309 |||||||||||||||||||| Sbjct: 19612 tcctgccccctcttttttcc 19631
>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of 11 of the complete sequence Length = 613322 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 agctgcaggcatgcatggct 402 |||||||||||||||||||| Sbjct: 93284 agctgcaggcatgcatggct 93265
>emb|AL662918.7| Human DNA sequence from clone RP11-176B3 on chromosome 1, complete sequence Length = 90140 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 gtagaacacctctaaatgtgatct 135 |||||||| ||||||||||||||| Sbjct: 70165 gtagaacatctctaaatgtgatct 70142
>emb|AL445188.5| Human DNA sequence from clone RP11-260E14 on chromosome 13, complete sequence Length = 164061 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 agctgcaggcatgcatggct 402 |||||||||||||||||||| Sbjct: 153364 agctgcaggcatgcatggct 153345
>emb|AL139118.12| Human DNA sequence from clone RP11-162K11 on chromosome 10 Contains the 5' end of a novel gene, part of the PLCE1 gene for phospholipase C, epsilon 1 (PLCE, KIAA1516), a novel gene and the 5' end of a histone deacetylase 1 (HD1, RPD3, RPD3L1) (HDAC1) pseudogene, complete sequence Length = 45754 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 153 aatccaaaacatcacaacatggca 176 ||||||| |||||||||||||||| Sbjct: 33738 aatccaacacatcacaacatggca 33715
>emb|AL139079.2|CJ11168X6 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 6/6 Length = 155932 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tttattttcactaacaaaaa 88 |||||||||||||||||||| Sbjct: 19059 tttattttcactaacaaaaa 19078
>gb|AC117463.5| Homo sapiens 3 BAC RP11-452B4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 78261 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 75 ttcactaacaaaaagatagtgagagaaa 102 |||||||| ||||||| ||||||||||| Sbjct: 9452 ttcactaaaaaaaagagagtgagagaaa 9479
>gb|AC161171.5| Mus musculus chromosome 3, clone RP24-326F21, complete sequence Length = 153637 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 acatcctgaatccaaaacatcaca 168 ||||||| |||||||||||||||| Sbjct: 3380 acatccttaatccaaaacatcaca 3357
>gb|AC152397.6| Mus musculus chromosome 18, clone RP23-307D12, complete sequence Length = 218647 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 atctatgtgctatttattttcact 80 ||||| |||||||||||||||||| Sbjct: 136570 atctaggtgctatttattttcact 136593
>gb|AC127321.4| Mus musculus BAC clone RP23-231A8 from chromosome 8, complete sequence Length = 220673 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 cttcctgccccctctttttt 307 |||||||||||||||||||| Sbjct: 70908 cttcctgccccctctttttt 70927
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ttattttcactaacaaaaag 89 |||||||||||||||||||| Sbjct: 14330288 ttattttcactaacaaaaag 14330307
>gb|AC026348.23| Homo sapiens 3 BAC RP11-553D4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 104159 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 agctgcaggcatgcatggct 402 |||||||||||||||||||| Sbjct: 82106 agctgcaggcatgcatggct 82125
>dbj|AP004637.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0703C03 Length = 162620 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ttattttcactaacaaaaag 89 |||||||||||||||||||| Sbjct: 145844 ttattttcactaacaaaaag 145863
>dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1136_A10 Length = 101249 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ttattttcactaacaaaaag 89 |||||||||||||||||||| Sbjct: 33368 ttattttcactaacaaaaag 33387
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 tggccagcgccggctcgaag 490 |||||||||||||||||||| Sbjct: 2536280 tggccagcgccggctcgaag 2536299
>gb|AC157017.3| Mus musculus 10 BAC RP24-559D16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 170093 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ctgtatgatttgtgcattga 358 |||||||||||||||||||| Sbjct: 100003 ctgtatgatttgtgcattga 99984
>gb|AC153966.4| Mus musculus 10 BAC RP24-357P6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 155839 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ctgtatgatttgtgcattga 358 |||||||||||||||||||| Sbjct: 25887 ctgtatgatttgtgcattga 25868
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aaaaagatagtgagagaaac 103 |||||||||||||||||||| Sbjct: 3072841 aaaaagatagtgagagaaac 3072822
>gb|AC161427.4| Gallus gallus BAC clone CH261-60M14 from chromosome ul, complete sequence Length = 174770 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aaaagatagtgagagaaacc 104 |||||||||||||||||||| Sbjct: 77572 aaaagatagtgagagaaacc 77591
>emb|AL928966.3| Mouse DNA sequence from clone RP24-388A9 on chromosome 2, complete sequence Length = 173369 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 tctatgtgctatttattttc 77 |||||||||||||||||||| Sbjct: 172897 tctatgtgctatttattttc 172916
>emb|AL928797.6| Mouse DNA sequence from clone RP23-178B19 on chromosome 2, complete sequence Length = 166185 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 tctatgtgctatttattttc 77 |||||||||||||||||||| Sbjct: 1528 tctatgtgctatttattttc 1547 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,824,380 Number of Sequences: 3902068 Number of extensions: 4824380 Number of successful extensions: 86846 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86483 Number of HSP's gapped (non-prelim): 363 length of query: 532 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 509 effective length of database: 17,143,297,704 effective search space: 8725938531336 effective search space used: 8725938531336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
