>BRCA2_HUMAN (P51587) Breast cancer type 2 susceptibility protein (Fanconi|
           anemia group D1 protein)
          Length = 3418

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 547 ENQPAENKFIPLSERVLSCAAHPLSHTIV--CGTEFSSLLMVSQKHE 413
           EN P   K   + E VL+ A HP+ H+ V    T+F S   +   HE
Sbjct: 718 ENDPKSKKVSDIKEEVLAAACHPVQHSKVEYSDTDFQSQKSLLYDHE 764

>FNDC3_HUMAN (Q9Y2H6) Fibronectin type-III domain-containing protein 3a|
          Length = 1134

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 108 SSCAPVSMPSSPTLERTSATTMSIGWS 188
           S CAP SMP+SP L +   T +S+ WS
Sbjct: 399 SGCAP-SMPASPVLTKAGITWLSLQWS 424

>SP4_MOUSE (Q62445) Transcription factor Sp4|
          Length = 782

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +3

Query: 42  QTTTYTEDSTF*NNKQ*ITSEQSSCAPVS-MPSSPTLERTSATTMSIGWSSGRKLNLVTN 218
           Q TT T+  T  N  Q +++  +S AP S MP SP+   T  TT S   +S     LV++
Sbjct: 283 QPTTTTDSGTS-NGNQLVSTPTTSTAPASTMPESPSSSTTCTTTASTTLTSSD--TLVSS 339

Query: 219 YTTSQ 233
             T Q
Sbjct: 340 ADTGQ 344

>TNR1A_MOUSE (P25118) Tumor necrosis factor receptor superfamily member 1A|
           precursor (p60) (TNF-R1) (TNF-RI) (TNFR-I) (p55)
          Length = 454

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 222 CSSSQDSACGQKTNQW-TWSSHLSFQVLDLKACLRG 118
           C + +D+ CG K NQ+  + S   FQ +D   C  G
Sbjct: 117 CQADKDTVCGCKENQFQRYLSETHFQCVDCSPCFNG 152

>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
 Frame = +3

Query: 6   TTQIKLIPIVHVQTTTYTEDSTF*NNKQ*ITSEQSSCAPVSMPSSPTLERTSA--TTMSI 179
           TT+    P+    ++T TE S+        ++ +SS APV  PSS T E +SA  T+ + 
Sbjct: 630 TTESSSAPVPTPSSST-TESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVTSSTT 688

Query: 180 GWSSGRKLNLVTNYTTSQLERPASQIQQS 266
             SS    +  T  +++ +  P+S   +S
Sbjct: 689 ESSSAPVTSSTTESSSAPVPTPSSSTTES 717


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,545,611
Number of Sequences: 219361
Number of extensions: 2137433
Number of successful extensions: 5389
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5382
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)