ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39e23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111490.1| Zea mays CL44711_1 mRNA sequence 180 4e-42
2ref|XM_466484.1| Oryza sativa (japonica cultivar-group), mRNA 123 8e-25
3dbj|AK102016.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 8e-25
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 72 3e-09
5dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 72 3e-09
6dbj|AP005640.2| Oryza sativa (japonica cultivar-group) genomic D... 72 3e-09
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.3
8gb|AC141893.4| Mus musculus BAC clone RP23-324F17 from chromosom... 42 2.3
9ref|XM_845829.1| PREDICTED: Canis familiaris similar to ATP-bind... 42 2.3
10gb|AC155317.5| Mus musculus BAC clone RP23-89D6 from chromosome ... 42 2.3
11emb|BX294142.1| Pirellula sp. strain 1 complete genome; segment ... 42 2.3
12gb|AC162465.3| Mus musculus 6 BAC RP24-108G5 (Roswell Park Cance... 42 2.3
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
14gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
15gb|AC102235.10| Mus musculus chromosome 3, clone RP24-97D20, com... 42 2.3
16gb|AC158657.2| Mus musculus 6 BAC RP23-395C12 (Roswell Park Canc... 42 2.3
17emb|AL591388.9| Zebrafish DNA sequence from clone BUSM1-255P14 i... 42 2.3
18gb|AC135668.5| Mus musculus BAC clone RP23-280P7 from chromosome... 40 8.9
19ref|XM_516571.1| PREDICTED: Pan troglodytes similar to COP9 sign... 40 8.9
20ref|NM_198189.2| Homo sapiens COP9 constitutive photomorphogenic... 40 8.9
21ref|NM_006710.4| Homo sapiens COP9 constitutive photomorphogenic... 40 8.9
22ref|XM_516177.1| PREDICTED: Pan troglodytes similar to COP9 sign... 40 8.9
23gb|BC003090.1| Homo sapiens COP9 constitutive photomorphogenic h... 40 8.9
24gb|DQ017631.1| Danio rerio TR2 mRNA, partial cds 40 8.9
25gb|U51205.1|HSU51205 Homo sapiens COP9 signalosome subunit 8 CSN... 40 8.9
26ref|NM_001020622.1| Danio rerio zgc:110672 (zgc:110672), mRNA 40 8.9
27emb|AL929403.9| Human DNA sequence from clone RP13-438O9 on chro... 40 8.9
28emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 40 8.9
29gb|BC036499.1| Homo sapiens COP9 constitutive photomorphogenic h... 40 8.9
30emb|CR857307.1| Pongo pygmaeus mRNA; cDNA DKFZp469J0132 (from cl... 40 8.9
31emb|CR625642.1| full-length cDNA clone CS0DI053YE04 of Placenta ... 40 8.9
32emb|CR624288.1| full-length cDNA clone CS0DI060YF09 of Placenta ... 40 8.9
33emb|CR624139.1| full-length cDNA clone CS0DF016YE07 of Fetal bra... 40 8.9
34emb|CR621907.1| full-length cDNA clone CS0DN004YN01 of Adult bra... 40 8.9
35emb|CR619073.1| full-length cDNA clone CS0DK001YK07 of HeLa cell... 40 8.9
36emb|CR612357.1| full-length cDNA clone CS0DA010YL02 of Neuroblas... 40 8.9
37emb|CR613293.1| full-length cDNA clone CS0DL011YG15 of B cells (... 40 8.9
38emb|CR611203.1| full-length cDNA clone CS0DJ014YC12 of T cells (... 40 8.9
39emb|CR607837.1| full-length cDNA clone CS0DF021YF24 of Fetal bra... 40 8.9
40emb|CR605123.1| full-length cDNA clone CS0DI002YO05 of Placenta ... 40 8.9
41emb|CR601867.1| full-length cDNA clone CS0DI081YA14 of Placenta ... 40 8.9
42emb|CR595867.1| full-length cDNA clone CS0DG002YI15 of B cells (... 40 8.9
43emb|CR595044.1| full-length cDNA clone CS0DN005YI22 of Adult bra... 40 8.9
44emb|CR594862.1| full-length cDNA clone CS0DI061YE09 of Placenta ... 40 8.9
45emb|CR593683.1| full-length cDNA clone CS0DI009YL11 of Placenta ... 40 8.9
46emb|CR593384.1| full-length cDNA clone CS0DI067YA06 of Placenta ... 40 8.9
47gb|AC078963.16| Homo sapiens 12q BAC RP11-362K2 (Roswell Park Ca... 40 8.9
48emb|CR456994.1| Homo sapiens full open reading frame cDNA clone ... 40 8.9
49gb|AC092416.3| Homo sapiens chromosome 3 clone RP11-89A12, compl... 40 8.9
50gb|BC095365.1| Danio rerio zgc:110672, mRNA (cDNA clone MGC:1106... 40 8.9
51ref|NG_003103.1| Homo sapiens COP9 pseudogene (LOC375350) on chr... 40 8.9
52gb|AC105760.3| Homo sapiens BAC clone RP11-346I14 from 2, comple... 40 8.9
53gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome 40 8.9
54dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 8.9
55gb|BC080617.1| Homo sapiens COP9 constitutive photomorphogenic h... 40 8.9
56emb|BX640593.8| Zebrafish DNA sequence from clone DKEY-183C16 in... 40 8.9
57emb|BX957285.9| Zebrafish DNA sequence from clone CH211-160M18 i... 40 8.9
58gb|U40942.2| Caenorhabditis elegans cosmid K02E10, complete sequ... 40 8.9
59emb|CR936437.14| Zebrafish DNA sequence from clone CH211-197I23 ... 40 8.9
60emb|AL807251.2| Human DNA sequence from clone RP11-425M20 on chr... 40 8.9 
>gb|AY111490.1| Zea mays CL44711_1 mRNA sequence
          Length = 637

 Score =  180 bits (91), Expect = 4e-42
 Identities = 154/175 (88%)
 Strand = Plus / Plus

                                                                       
Query: 421 tttgtgataccatgagtaacgatgaaaactcggtaccacaaactatggtgtgactgagtg 480
           ||||||||| |||||| |||||||| ||||  ||||||  || |||||||||||||||||
Sbjct: 411 tttgtgataacatgagcaacgatgagaactgtgtaccagcaattatggtgtgactgagtg 470

                                                                       
Query: 481 gatgggctgcacaggaaagcaccctttcagataagggaataaacttgttttctgcaggtt 540
           |||||||||||||||||||||||||||  ||||| |||| |||||||||| |||||||||
Sbjct: 471 gatgggctgcacaggaaagcaccctttgggataaaggaacaaacttgtttcctgcaggtt 530

                                                                  
Query: 541 gattttcctcgcagccttttgtttcctcgttgtagtcgacgtggcatgcggagct 595
           |||||||| || || || |||||||||| |||||||| || |||||||| |||||
Sbjct: 531 gattttccccggagactcttgtttcctctttgtagtccacatggcatgcagagct 585
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>ref|XM_466484.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2085

 Score =  123 bits (62), Expect = 8e-25
 Identities = 119/138 (86%)
 Strand = Plus / Minus

                                                                        
Query: 480  ggatgggctgcacaggaaagcaccctttcagataagggaataaacttgttttctgcaggt 539
            ||||| |||||||||||||  || || | |||| | ||||||||||||||| ||||||||
Sbjct: 1512 ggatgtgctgcacaggaaacaactctctgagatgaaggaataaacttgtttgctgcaggt 1453

                                                                        
Query: 540  tgattttcctcgcagccttttgtttcctcgttgtagtcgacgtggcatgcggagcttgta 599
            |  ||||| ||| ||||| || ||||||| ||||||||||| |||||||| || ||||||
Sbjct: 1452 ttcttttcatcggagcctcttatttcctcattgtagtcgacatggcatgctgaacttgta 1393

                              
Query: 600  tctggatgaaaatccagt 617
            ||||||||||||||||||
Sbjct: 1392 tctggatgaaaatccagt 1375
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>dbj|AK102016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080F08, full
            insert sequence
          Length = 2085

 Score =  123 bits (62), Expect = 8e-25
 Identities = 119/138 (86%)
 Strand = Plus / Minus

                                                                        
Query: 480  ggatgggctgcacaggaaagcaccctttcagataagggaataaacttgttttctgcaggt 539
            ||||| |||||||||||||  || || | |||| | ||||||||||||||| ||||||||
Sbjct: 1512 ggatgtgctgcacaggaaacaactctctgagatgaaggaataaacttgtttgctgcaggt 1453

                                                                        
Query: 540  tgattttcctcgcagccttttgtttcctcgttgtagtcgacgtggcatgcggagcttgta 599
            |  ||||| ||| ||||| || ||||||| ||||||||||| |||||||| || ||||||
Sbjct: 1452 ttcttttcatcggagcctcttatttcctcattgtagtcgacatggcatgctgaacttgta 1393

                              
Query: 600  tctggatgaaaatccagt 617
            ||||||||||||||||||
Sbjct: 1392 tctggatgaaaatccagt 1375
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                                
Query: 570      ttgtagtcgacgtggcatgcggagcttgtatctggatgaaaatccagt 617
                ||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 22892405 ttgtagtcgacatggcatgctgaacttgtatctggatgaaaatccagt 22892452



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 74/89 (83%)
 Strand = Plus / Plus

                                                                            
Query: 480      ggatgggctgcacaggaaagcaccctttcagataagggaataaacttgttttctgcaggt 539
                ||||| |||||||||||||  || || | |||| | ||||||||||||||| ||||||||
Sbjct: 22892212 ggatgtgctgcacaggaaacaactctctgagatgaaggaataaacttgtttgctgcaggt 22892271

                                             
Query: 540      tgattttcctcgcagccttttgtttcctc 568
                |  ||||| ||| ||||| || |||||||
Sbjct: 22892272 ttcttttcatcggagcctcttatttcctc 22892300
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>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016G10
          Length = 143211

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                             
Query: 570   ttgtagtcgacgtggcatgcggagcttgtatctggatgaaaatccagt 617
             ||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 12207 ttgtagtcgacatggcatgctgaacttgtatctggatgaaaatccagt 12254



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 74/89 (83%)
 Strand = Plus / Plus

                                                                         
Query: 480   ggatgggctgcacaggaaagcaccctttcagataagggaataaacttgttttctgcaggt 539
             ||||| |||||||||||||  || || | |||| | ||||||||||||||| ||||||||
Sbjct: 12014 ggatgtgctgcacaggaaacaactctctgagatgaaggaataaacttgtttgctgcaggt 12073

                                          
Query: 540   tgattttcctcgcagccttttgtttcctc 568
             |  ||||| ||| ||||| || |||||||
Sbjct: 12074 ttcttttcatcggagcctcttatttcctc 12102
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>dbj|AP005640.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0006O15
          Length = 139723

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                              
Query: 570    ttgtagtcgacgtggcatgcggagcttgtatctggatgaaaatccagt 617
              ||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 125743 ttgtagtcgacatggcatgctgaacttgtatctggatgaaaatccagt 125790



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 74/89 (83%)
 Strand = Plus / Plus

                                                                          
Query: 480    ggatgggctgcacaggaaagcaccctttcagataagggaataaacttgttttctgcaggt 539
              ||||| |||||||||||||  || || | |||| | ||||||||||||||| ||||||||
Sbjct: 125550 ggatgtgctgcacaggaaacaactctctgagatgaaggaataaacttgtttgctgcaggt 125609

                                           
Query: 540    tgattttcctcgcagccttttgtttcctc 568
              |  ||||| ||| ||||| || |||||||
Sbjct: 125610 ttcttttcatcggagcctcttatttcctc 125638
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 82      acaaacagtaaattacaagcg 102
               |||||||||||||||||||||
Sbjct: 2445510 acaaacagtaaattacaagcg 2445490
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>gb|AC141893.4| Mus musculus BAC clone RP23-324F17 from chromosome 15, complete sequence
          Length = 182603

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 140    tccaacacttgaaaggacaag 160
              |||||||||||||||||||||
Sbjct: 139859 tccaacacttgaaaggacaag 139879
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>ref|XM_845829.1| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family A, member 6 isoform a, transcript variant 2
           (LOC480456), mRNA
          Length = 5369

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 622 acattccattattggaggaagatcc 646
           |||||||||| ||||||||||||||
Sbjct: 428 acattccatttttggaggaagatcc 452
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>gb|AC155317.5| Mus musculus BAC clone RP23-89D6 from chromosome 15, complete sequence
          Length = 251377

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 140    tccaacacttgaaaggacaag 160
              |||||||||||||||||||||
Sbjct: 140789 tccaacacttgaaaggacaag 140769
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>emb|BX294142.1| Pirellula sp. strain 1 complete genome; segment 10/24
          Length = 294050

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 562    tttcctcgttgtagtcgacgt 582
              |||||||||||||||||||||
Sbjct: 142284 tttcctcgttgtagtcgacgt 142264
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>gb|AC162465.3| Mus musculus 6 BAC RP24-108G5 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 203546

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 528   ttttctgcaggttgattttcc 548
             |||||||||||||||||||||
Sbjct: 36557 ttttctgcaggttgattttcc 36577
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 82      acaaacagtaaattacaagcg 102
               |||||||||||||||||||||
Sbjct: 2445620 acaaacagtaaattacaagcg 2445600
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>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09,
             complete sequence
          Length = 106057

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 82    acaaacagtaaattacaagcg 102
             |||||||||||||||||||||
Sbjct: 18006 acaaacagtaaattacaagcg 17986
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>gb|AC102235.10| Mus musculus chromosome 3, clone RP24-97D20, complete sequence
          Length = 183178

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 131    gccttcaagtccaacacttgaaagg 155
              ||||| |||||||||||||||||||
Sbjct: 105562 gcctttaagtccaacacttgaaagg 105586
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>gb|AC158657.2| Mus musculus 6 BAC RP23-395C12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 202215

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 528    ttttctgcaggttgattttcc 548
              |||||||||||||||||||||
Sbjct: 105728 ttttctgcaggttgattttcc 105708
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>emb|AL591388.9| Zebrafish DNA sequence from clone BUSM1-255P14 in linkage group 7,
            complete sequence
          Length = 97239

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 59   agaggacagcactttctgaaa 79
            |||||||||||||||||||||
Sbjct: 8024 agaggacagcactttctgaaa 8044
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>gb|AC135668.5| Mus musculus BAC clone RP23-280P7 from chromosome 6, complete sequence
          Length = 207975

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    aacacttgaaaggacaagtg 162
              ||||||||||||||||||||
Sbjct: 105152 aacacttgaaaggacaagtg 105171
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>ref|XM_516571.1| PREDICTED: Pan troglodytes similar to COP9 signalosome subunit 8
           isoform 1 (LOC460493), mRNA
          Length = 663

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 510 gataagggaataaacttgtt 491
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>ref|NM_198189.2| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8
            (Arabidopsis) (COPS8), transcript variant 2, mRNA
          Length = 2339

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 510  gataagggaataaacttgtt 529
            ||||||||||||||||||||
Sbjct: 1137 gataagggaataaacttgtt 1118
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>ref|NM_006710.4| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8
            (Arabidopsis) (COPS8), transcript variant 1, mRNA
          Length = 2274

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 510  gataagggaataaacttgtt 529
            ||||||||||||||||||||
Sbjct: 1072 gataagggaataaacttgtt 1053
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>ref|XM_516177.1| PREDICTED: Pan troglodytes similar to COP9 signalosome subunit 8
           isoform 1 (LOC460043), mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 587 gataagggaataaacttgtt 568
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>gb|BC003090.1| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8
           (Arabidopsis), transcript variant 1, mRNA (cDNA clone
           MGC:1297 IMAGE:3503287), complete cds
          Length = 1637

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 596 gataagggaataaacttgtt 577
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>gb|DQ017631.1| Danio rerio TR2 mRNA, partial cds
          Length = 1740

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 426 gataccatgagtaacgatga 445
           ||||||||||||||||||||
Sbjct: 856 gataccatgagtaacgatga 875
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>gb|U51205.1|HSU51205 Homo sapiens COP9 signalosome subunit 8 CSN8 (CSN8) mRNA, complete
           cds
          Length = 922

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 597 gataagggaataaacttgtt 578
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>ref|NM_001020622.1| Danio rerio zgc:110672 (zgc:110672), mRNA
          Length = 2397

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 426  gataccatgagtaacgatga 445
            ||||||||||||||||||||
Sbjct: 1097 gataccatgagtaacgatga 1116
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>emb|AL929403.9| Human DNA sequence from clone RP13-438O9 on chromosome 6, complete
             sequence
          Length = 86576

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 515   gggaataaacttgttttctgcagg 538
             |||||||||||| |||||||||||
Sbjct: 60194 gggaataaactttttttctgcagg 60171
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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 74      ctgaaacaacaaacagtaaa 93
               ||||||||||||||||||||
Sbjct: 4935727 ctgaaacaacaaacagtaaa 4935708
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>gb|BC036499.1| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8
            (Arabidopsis), transcript variant 1, mRNA (cDNA clone
            MGC:43256 IMAGE:5264527), complete cds
          Length = 2244

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 510  gataagggaataaacttgtt 529
            ||||||||||||||||||||
Sbjct: 1206 gataagggaataaacttgtt 1187
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>emb|CR857307.1| Pongo pygmaeus mRNA; cDNA DKFZp469J0132 (from clone DKFZp469J0132)
          Length = 1688

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 628 gataagggaataaacttgtt 609
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>emb|CR625642.1| full-length cDNA clone CS0DI053YE04 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1611

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 591 gataagggaataaacttgtt 572
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>emb|CR624288.1| full-length cDNA clone CS0DI060YF09 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1584

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 582 gataagggaataaacttgtt 563
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>emb|CR624139.1| full-length cDNA clone CS0DF016YE07 of Fetal brain of Homo sapiens
           (human)
          Length = 933

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 587 gataagggaataaacttgtt 568
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>emb|CR621907.1| full-length cDNA clone CS0DN004YN01 of Adult brain of Homo sapiens
           (human)
          Length = 1587

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 568 gataagggaataaacttgtt 549
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>emb|CR619073.1| full-length cDNA clone CS0DK001YK07 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1603

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 587 gataagggaataaacttgtt 568
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>emb|CR612357.1| full-length cDNA clone CS0DA010YL02 of Neuroblastoma of Homo
           sapiens (human)
          Length = 1591

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 579 gataagggaataaacttgtt 560
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>emb|CR613293.1| full-length cDNA clone CS0DL011YG15 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 1569

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 597 gataagggaataaacttgtt 578
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>emb|CR611203.1| full-length cDNA clone CS0DJ014YC12 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1603

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 582 gataagggaataaacttgtt 563
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>emb|CR607837.1| full-length cDNA clone CS0DF021YF24 of Fetal brain of Homo sapiens
           (human)
          Length = 1577

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 604 gataagggaataaacttgtt 585
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>emb|CR605123.1| full-length cDNA clone CS0DI002YO05 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1572

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 582 gataagggaataaacttgtt 563
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>emb|CR601867.1| full-length cDNA clone CS0DI081YA14 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1564

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 587 gataagggaataaacttgtt 568
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>emb|CR595867.1| full-length cDNA clone CS0DG002YI15 of B cells (Ramos cell line) of
           Homo sapiens (human)
          Length = 1576

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 561 gataagggaataaacttgtt 542
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>emb|CR595044.1| full-length cDNA clone CS0DN005YI22 of Adult brain of Homo sapiens
           (human)
          Length = 1591

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 597 gataagggaataaacttgtt 578
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>emb|CR594862.1| full-length cDNA clone CS0DI061YE09 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1578

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 582 gataagggaataaacttgtt 563
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>emb|CR593683.1| full-length cDNA clone CS0DI009YL11 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1587

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 587 gataagggaataaacttgtt 568
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>emb|CR593384.1| full-length cDNA clone CS0DI067YA06 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 992

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 623 gataagggaataaacttgtt 604
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>gb|AC078963.16| Homo sapiens 12q BAC RP11-362K2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 123253

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      tctacacaacacaaattaaa 20
              ||||||||||||||||||||
Sbjct: 105739 tctacacaacacaaattaaa 105758
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>emb|CR456994.1| Homo sapiens full open reading frame cDNA clone RZPDo834E075D for
           gene COPS8, COP9 constitutive photomorphogenic homolog
           subunit 8 (Arabidopsis); complete cds, incl. stopcodon
          Length = 630

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 548 gataagggaataaacttgtt 529
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>gb|AC092416.3| Homo sapiens chromosome 3 clone RP11-89A12, complete sequence
          Length = 23515

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 510   gataagggaataaacttgtt 529
             ||||||||||||||||||||
Sbjct: 18795 gataagggaataaacttgtt 18814
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>gb|BC095365.1| Danio rerio zgc:110672, mRNA (cDNA clone MGC:110672 IMAGE:7165974),
            complete cds
          Length = 2397

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 426  gataccatgagtaacgatga 445
            ||||||||||||||||||||
Sbjct: 1097 gataccatgagtaacgatga 1116
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>ref|NG_003103.1| Homo sapiens COP9 pseudogene (LOC375350) on chromosome 3
          Length = 982

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 660 gataagggaataaacttgtt 641
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>gb|AC105760.3| Homo sapiens BAC clone RP11-346I14 from 2, complete sequence
          Length = 77730

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   gataagggaataaacttgtt 529
             ||||||||||||||||||||
Sbjct: 60948 gataagggaataaacttgtt 60929
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>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 280     tcgctattacgtgcaggacgtcca 303
               |||||||||||||||| |||||||
Sbjct: 1168650 tcgctattacgtgcagcacgtcca 1168673
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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 74      ctgaaacaacaaacagtaaa 93
               ||||||||||||||||||||
Sbjct: 5002270 ctgaaacaacaaacagtaaa 5002251
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>gb|BC080617.1| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8
           (Arabidopsis), transcript variant 1, mRNA (cDNA clone
           MGC:99545 IMAGE:6252628), complete cds
          Length = 961

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 gataagggaataaacttgtt 529
           ||||||||||||||||||||
Sbjct: 568 gataagggaataaacttgtt 549
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>emb|BX640593.8| Zebrafish DNA sequence from clone DKEY-183C16 in linkage group 4,
             complete sequence
          Length = 218192

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   gataccatgagtaacgatga 445
             ||||||||||||||||||||
Sbjct: 45864 gataccatgagtaacgatga 45883
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>emb|BX957285.9| Zebrafish DNA sequence from clone CH211-160M18 in linkage group 10,
              complete sequence
          Length = 156078

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      ctacacaacacaaattaaac 21
              ||||||||||||||||||||
Sbjct: 141210 ctacacaacacaaattaaac 141191
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>gb|U40942.2| Caenorhabditis elegans cosmid K02E10, complete sequence
          Length = 38434

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 513  aagggaataaacttgttttc 532
            ||||||||||||||||||||
Sbjct: 2167 aagggaataaacttgttttc 2186
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>emb|CR936437.14| Zebrafish DNA sequence from clone CH211-197I23 in linkage group 3,
             complete sequence
          Length = 96056

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    agaggacagcactttctgaa 78
             ||||||||||||||||||||
Sbjct: 34043 agaggacagcactttctgaa 34062
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>emb|AL807251.2| Human DNA sequence from clone RP11-425M20 on chromosome 6, complete
             sequence
          Length = 40767

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 515   gggaataaacttgttttctgcagg 538
             |||||||||||| |||||||||||
Sbjct: 14401 gggaataaactttttttctgcagg 14378


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,299,092
Number of Sequences: 3902068
Number of extensions: 5299092
Number of successful extensions: 102659
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102425
Number of HSP's gapped (non-prelim): 234
length of query: 655
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 632
effective length of database: 17,143,297,704
effective search space: 10834564148928
effective search space used: 10834564148928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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