ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38p16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ILR1_ARATH (P54968) IAA-amino acid hydrolase ILR1 precursor (EC ... 29 3.6
2KPB2_MOUSE (Q8BWJ3) Phosphorylase b kinase alpha regulatory chai... 28 4.7
3ITA8_CHICK (P26009) Integrin alpha-8 precursor [Contains: Integr... 28 4.7
4LSPA_CHLTR (O84413) Lipoprotein signal peptidase (EC 3.4.23.36) ... 28 4.7
5GSHB_RALSO (P58579) Glutathione synthetase (EC 6.3.2.3) (Glutath... 28 8.0

>ILR1_ARATH (P54968) IAA-amino acid hydrolase ILR1 precursor (EC 3.5.1.-)|
          Length = 442

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 68  NKISMRCHGCSFDRRARPLVTVQELLPLNKHLLLRQGKTESQPG 199
           +K+  + H C  D     L+   +LL   KHL+    K   QPG
Sbjct: 129 SKVDGKMHACGHDTHVAMLLGAAKLLQTTKHLIKGTVKLVFQPG 172



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>KPB2_MOUSE (Q8BWJ3) Phosphorylase b kinase alpha regulatory chain, liver isoform|
            (Phosphorylase kinase alpha L subunit)
          Length = 1235

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 35   NRSTDSPFAKHNKISMRCHGCSFDRRARPLVTVQELLP 148
            NR     + K  KI  +CHG S D    P  T QE+ P
Sbjct: 1078 NRVPVGFYQKVWKILQKCHGLSIDGYVLPSSTTQEMTP 1115



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>ITA8_CHICK (P26009) Integrin alpha-8 precursor [Contains: Integrin alpha-8|
           heavy chain; Integrin alpha-8 light chain]
          Length = 1044

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 110 RARPLVTVQELLPLNKHLLLRQGKTESQPG 199
           RARP+VTV  LL LN  ++    KT   PG
Sbjct: 464 RARPVVTVNALLILNPMIVNPDNKTCQPPG 493



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>LSPA_CHLTR (O84413) Lipoprotein signal peptidase (EC 3.4.23.36)|
           (Prolipoprotein signal peptidase) (Signal peptidase II)
           (SPase II)
          Length = 167

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 107 CQMSIHGSAWKFCYVWQKESLLI 39
           CQ+S H SA+ + YVW   S LI
Sbjct: 31  CQLSPHSSAFLYSYVWGHFSFLI 53



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>GSHB_RALSO (P58579) Glutathione synthetase (EC 6.3.2.3) (Glutathione synthase)|
           (GSH synthetase) (GSH-S) (GSHase)
          Length = 324

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 186 SVFPCRNSRCLFRGNNSCTVTKGLARLSNEHPWQR 82
           +++ C+ S+    GN   TV   LA   +EH W R
Sbjct: 33  AIYTCQQSQLTLSGNVVETVATPLALTGDEHDWYR 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,787,826
Number of Sequences: 219361
Number of extensions: 523731
Number of successful extensions: 1403
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 80,573,946
effective HSP length: 65
effective length of database: 66,315,481
effective search space used: 1591571544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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