ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal38p11 |
|---|---|
| Clone Library Name | barley_pub |
>PIC2_YEAST (P40035) Mitochondrial phosphate carrier protein 2 (Phosphate| transport protein 2) (PTP 2) (mPic 2) (Pi carrier isoform 2) Length = 300 Score = 47.4 bits (111), Expect = 9e-06 Identities = 22/29 (75%), Positives = 23/29 (79%) Frame = -3 Query: 373 RIVXIGTLTGAQWGIYDAFKVMVGLPTTG 287 RIV IGTLT QW IYD+FK VGLPTTG Sbjct: 272 RIVMIGTLTSFQWLIYDSFKAYVGLPTTG 300
>MPCP_CHOFU (O61703) Phosphate carrier protein, mitochondrial precursor| (Phosphate transport protein) (PTP) Length = 349 Score = 39.7 bits (91), Expect = 0.002 Identities = 21/40 (52%), Positives = 25/40 (62%) Frame = -3 Query: 373 RIVXIGTLTGAQWGIYDAFKVMVGLPTTGGAPPVAPVEES 254 RI+ IGTLT QW IYDA KV + +P PP A + ES Sbjct: 303 RIIMIGTLTALQWFIYDAVKVWLRMP----RPPPAEMPES 338
>MPCP_CAEEL (P40614) Phosphate carrier protein, mitochondrial precursor (PTP)| Length = 340 Score = 38.1 bits (87), Expect = 0.005 Identities = 20/41 (48%), Positives = 23/41 (56%) Frame = -3 Query: 373 RIVXIGTLTGAQWGIYDAFKVMVGLPTTGGAPPVAPVEESA 251 RI+ IGTLT QW IYD+ KV + LP PP P A Sbjct: 296 RIIMIGTLTALQWFIYDSVKVALNLPRP--PPPEMPASLKA 334
>MPCP_MOUSE (Q8VEM8) Phosphate carrier protein, mitochondrial precursor (PTP)| (Solute carrier family 25 member 3) Length = 357 Score = 36.6 bits (83), Expect = 0.015 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = -3 Query: 373 RIVXIGTLTGAQWGIYDAFKVMVGLPTTGGAPPVAPVEES 254 RI+ IGTLT QW IYD+ KV LP PP + ES Sbjct: 313 RIIMIGTLTALQWFIYDSVKVYFRLP----RPPPPEMPES 348
>MPCP_HUMAN (Q00325) Phosphate carrier protein, mitochondrial precursor (PTP)| (Solute carrier family 25 member 3) Length = 362 Score = 36.6 bits (83), Expect = 0.015 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = -3 Query: 373 RIVXIGTLTGAQWGIYDAFKVMVGLPTTGGAPPVAPVEES 254 RI+ IGTLT QW IYD+ KV LP PP + ES Sbjct: 318 RIIMIGTLTALQWFIYDSVKVYFRLP----RPPPPEMPES 353
>MPCP_BOVIN (P12234) Phosphate carrier protein, mitochondrial precursor (PTP)| (Solute carrier family 25 member 3) Length = 362 Score = 36.6 bits (83), Expect = 0.015 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = -3 Query: 373 RIVXIGTLTGAQWGIYDAFKVMVGLPTTGGAPPVAPVEES 254 RI+ IGTLT QW IYD+ KV LP PP + ES Sbjct: 318 RIIMIGTLTALQWFIYDSVKVYFRLP----RPPPPEMPES 353
>MPCP_RAT (P16036) Phosphate carrier protein, mitochondrial precursor (PTP)| (Solute carrier family 25 member 3) Length = 356 Score = 36.6 bits (83), Expect = 0.015 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = -3 Query: 373 RIVXIGTLTGAQWGIYDAFKVMVGLPTTGGAPPVAPVEES 254 RI+ IGTLT QW IYD+ KV LP PP + ES Sbjct: 312 RIIMIGTLTALQWFIYDSVKVYFRLP----RPPPPEMPES 347
>MPCP_YEAST (P23641) Mitochondrial phosphate carrier protein (Phosphate| transport protein) (PTP) (mPic 1) (Mitochondrial import receptor) (p32) Length = 311 Score = 33.1 bits (74), Expect = 0.17 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = -3 Query: 373 RIVXIGTLTGAQWGIYDAFKVMVGLPTT 290 R+V +GTLT Q+GIY + K +G P T Sbjct: 276 RLVMVGTLTSLQFGIYGSLKSTLGCPPT 303
>LEP4_MYXXA (O30387) Type 4 prepilin-like proteins leader peptide-processing| enzyme [Includes: Leader peptidase (EC 3.4.23.43) (Prepilin peptidase); N-methyltransferase (EC 2.1.1.-)] Length = 335 Score = 32.0 bits (71), Expect = 0.37 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 247 LIFAAMTMYSWLWLLVDGTVSVTCLAPKIFCYCSRWLLSLS 125 L FA + + W + LV V V+ L P F W+L LS Sbjct: 95 LFFACLRRFGWTYELVPALVLVSLLVPLAFIDLDHWILPLS 135
>TENR_CHICK (Q00546) Tenascin-R precursor (TN-R) (Restrictin)| Length = 1353 Score = 31.2 bits (69), Expect = 0.64 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Frame = -2 Query: 344 CSVGNL*CV*SYGGTP-DHRRCSTSCSGRGISLIDFCCYDDVFLVVVIGGWDC 189 C G C Y G RC +CSGRG+ C +D + GG DC Sbjct: 275 CDNGTCVCAEGYAGEDCGWLRCPNACSGRGVCQDGLCICEDGY-----GGQDC 322 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Frame = -2 Query: 344 CSVGNL*CV*SYGGTP-DHRRCSTSCSGRGISLIDFCCYDDVFLVVVIGGWDC 189 C G C YGG RC C RG+ + C ++ F GG DC Sbjct: 213 CLEGQCVCDNDYGGEDCSQLRCPAGCGSRGLCVDGECICEEGF-----GGEDC 260
>PALF_KLULA (Q6CTM7) pH-response regulator protein palF/RIM8| Length = 572 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +1 Query: 76 GGQKKAYFACLMSSSHLIETITICYNNKRFWVLNK*LIQSHPPI 207 GG+ K F+C ++ +L+ +I + R+WV + Q PPI Sbjct: 133 GGEHKFPFSCKINGKNLVSSIDFKKGSIRYWVQAELHAQKTPPI 176
>M1_DHVI1 (Q01479) Matrix protein 1 (M1)| Length = 270 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = +3 Query: 18 LRSNSLAVLKLIMSSIKLSRGAKKGLFRLLNEFLSSDRDNNHLLQ*QKILGAKQVTDTV 194 L SN L K M+S+K AK GL + N S DR+ +L IL + + TV Sbjct: 73 LISNRLKGGKYDMNSVKKGYKAKDGLQEISNYISSLDREGKQVLACMLILSTQSIGKTV 131
>HDA4_CAEBR (Q613L4) Histone deacetylase 4| Length = 892 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 3/44 (6%) Frame = +3 Query: 204 NNHNQEYIVIAAKINQADSSTGATGGAP---PVVGSPTITLNAS 326 ++ + + V+ A++ +A SSTG+TGGA PV+ S + L A+ Sbjct: 5 SSSSSSFPVVFARMEEASSSTGSTGGAMAGIPVIPSTSAALLAN 48
>DAPD_BUCBP (Q89AP4) 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate| N-succinyltransferase (EC 2.3.1.117) (Tetrahydrodipicolinate N-succinyltransferase) (THP succinyltransferase) (Tetrahydropicolinate succinylase) Length = 274 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +3 Query: 126 DRDNNHLLQ*QKILGAKQVTDTVPSTNNHNQEYIVIAAKIN-QADSSTG 269 DR+N +L + G+ V ++PS NN N +VI ++N Q S TG Sbjct: 216 DRNNKKILYGKVPSGSVVVPGSLPSKNNCNLYCVVIVKQVNAQTLSKTG 264
>Y338_MYCGE (P47580) Hypothetical lipoprotein MG338 precursor| Length = 1271 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +3 Query: 9 WXNLRSNSLAVLKLIMSSIKLSRGAKKGLFRLLNEFLSSDRDNNHLLQ*QKIL-GAKQVT 185 W N ++NSL + K I S+ + + +G L L + H + Q+IL G K++ Sbjct: 1198 WKNNKANSLGLKKEIFMSLLIEQALDEGTQELAFLDLIRENQKQHQREHQQILVGDKRLY 1257 Query: 186 DTVPST 203 D + T Sbjct: 1258 DILGQT 1263
>GAT6B_XENLA (P70005) GATA-binding factor 6-B (Transcription factor xGATA-6B)| Length = 391 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 281 STAGGRESHHNFKRIIDSPLSTSKSTNXDD 370 S++ G SHH I +P ST+ STN DD Sbjct: 296 SSSNGNSSHH----ITMTPTSTTSSTNSDD 321
>YCZ2_SCHPO (O74556) Putative mannan endo-1,6-alpha-mannosidase C970.02| precursor (EC 3.2.1.101) (Endo-alpha-1->6-D-mannanase C970.02) Length = 442 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = -1 Query: 153 IVADGYCLYQMRGTH*AGEIGLFLPP 76 +VADG Y G H G IG+FLPP Sbjct: 36 LVADGLLNYYA-GQHKGGTIGMFLPP 60
>BUCA_BUNCA (P81782) Bucandin| Length = 63 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = -3 Query: 190 VSVTCLAPKIFCYCSRWLLSLSDER 116 + +TC A + FCY +WL +S+ER Sbjct: 13 LKITCSAEETFCY--KWLNKISNER 35
>TRUD_NITOC (Q3JCS7) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 358 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +3 Query: 18 LRSNSLAVLKLIMSSIKLSRGAKKG-LFRLLNEFLSSDRD 134 L S ++ VLK+I S KL RGA KG F L DR+ Sbjct: 109 LESATVQVLKVIRHSRKLQRGALKGNRFLLTLRHFQGDRE 148 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,736,353 Number of Sequences: 219361 Number of extensions: 1142988 Number of successful extensions: 2761 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2708 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2760 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
