ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39e18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor 91 2e-18
2SSG2_AVESA (P14812) 12S seed storage globulin 2 precursor [Conta... 32 2.1
3SSG1_AVESA (P12615) 12S seed storage globulin 1 precursor [Conta... 32 2.1
4SUWA_DROME (P12297) Protein suppressor of white apricot 30 6.1

>EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor|
          Length = 684

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 43/75 (57%), Positives = 55/75 (73%)
 Frame = -1

Query: 645 LENRGAYPEEFGVTASYKGQGRIAQPGFKNPRWVDGELLVLNGKSAIPHIGGAELGFLYS 466
           L ++G  PEEFGV A YKGQGR+A PGF+NPRWVDGEL++L+GK      GG  +GF+Y 
Sbjct: 611 LPHKGLIPEEFGVIARYKGQGRLADPGFRNPRWVDGELVILDGKYV---KGGPVVGFVYW 667

Query: 465 VPEQSFLVLFDRLTL 421
            PE  F++ F+RL L
Sbjct: 668 APEYHFVMFFNRLRL 682



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>SSG2_AVESA (P14812) 12S seed storage globulin 2 precursor [Contains: 12S seed|
           storage globulin 2 acidic chain; 12S seed storage
           globulin 2 basic chain]
          Length = 518

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 25  FCSIKAIPKLVSSKRANERNPRKGRARHVYNR 120
           FCS++A   + + KRA+  NPR GR  H+ ++
Sbjct: 323 FCSLEARQNIENPKRADTYNPRAGRITHLNSK 354



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>SSG1_AVESA (P12615) 12S seed storage globulin 1 precursor [Contains: 12S seed|
           storage globulin 1 acidic chain; 12S seed storage
           globulin 1 basic chain]
          Length = 518

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 25  FCSIKAIPKLVSSKRANERNPRKGRARHVYNR 120
           FCS++A   + + KRA+  NPR GR  H+ ++
Sbjct: 323 FCSLEARQNIENPKRADTYNPRAGRITHLNSK 354



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>SUWA_DROME (P12297) Protein suppressor of white apricot|
          Length = 963

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +2

Query: 374 THERTSSYQRDLAHSGSV---RRSKRTRKLCSGTLYRKPSSAPP 496
           TH R+ S  +++  S S    R S R R+  S  L R+PSS PP
Sbjct: 837 THRRSRSRSKNVRSSDSSPSSRESSRRRRQKSSRLSREPSSNPP 880


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,977,215
Number of Sequences: 219361
Number of extensions: 1836753
Number of successful extensions: 5032
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5029
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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