ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39e13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GP157_HUMAN (Q5UAW9) Probable G-protein coupled receptor 157 30 2.2
2KRA47_HUMAN (Q9BYR0) Keratin-associated protein 4-7 (Keratin-ass... 29 2.8
3KR414_HUMAN (Q9BYQ6) Keratin-associated protein 4-14 (Keratin-as... 29 2.8
4MRE11_PYRHO (O58686) DNA double-strand break repair protein mre11 29 2.8
5EDG4_HUMAN (Q9HBW0) Lysophosphatidic acid receptor Edg-4 (LPA re... 28 4.8
6SPAG8_HUMAN (Q99932) Sperm-associated antigen 8 (Sperm membrane ... 28 6.3
7KRA42_HUMAN (Q9BYR5) Keratin-associated protein 4-2 (Keratin-ass... 28 6.3
8EDG4_MACFA (Q95KH4) Lysophosphatidic acid receptor Edg-4 (LPA re... 28 8.2
9MRE11_PYRAB (Q9UZC9) DNA double-strand break repair protein mre11 28 8.2
10SP8_MOUSE (Q8BMJ8) Transcription factor Sp8 28 8.2

>GP157_HUMAN (Q5UAW9) Probable G-protein coupled receptor 157|
          Length = 335

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 32  LRLPSMAIDPGCGHSLLRAISLINIASCTRCGVRRFFIRLICCCSS 169
           ++ P + +  G G++     + I    CTR    R F    CCCSS
Sbjct: 255 VQTPVLVVLHGIGNTFQGGANCIMFVLCTRAVRTRLFSLCCCCCSS 300



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>KRA47_HUMAN (Q9BYR0) Keratin-associated protein 4-7 (Keratin-associated protein|
           4.7) (Ultrahigh sulfur keratin-associated protein 4.7)
          Length = 210

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +2

Query: 44  SMAIDPGCGHSLLRAISLINIASCTRCGVRRFFIRLICCCSS*YLPRCGESMRFTPSC 217
           S+  D GCG  L +          T C  R    R  CC SS   P+C +S+   P+C
Sbjct: 8   SVCSDQGCGQVLCQETCCRPSCCQTTC-CRTTCYRPSCCVSSCCRPQCCQSVCCQPTC 64



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>KR414_HUMAN (Q9BYQ6) Keratin-associated protein 4-14 (Keratin-associated|
           protein 4.14) (Ultrahigh sulfur keratin-associated
           protein 4.14)
          Length = 195

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 44  SMAIDPGCGHSLLRAISLINIASCTRCGVRRFFIRLICCCSS*YLPRCGESMRFTPSC 217
           S+    GCG  L +  +    + C     R  + R  CC SS   P+C +S+   P+C
Sbjct: 8   SVCSHQGCGQDLCQE-TCCRPSCCETTCCRTTYCRPSCCVSSCCRPQCCQSVCCQPTC 64



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>MRE11_PYRHO (O58686) DNA double-strand break repair protein mre11|
          Length = 413

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 19  EREVPPFAIDGNRSRLWSQPSSCHQLNQHRLLHPV 123
           E  +P FAI+GN  R    PS  H L    LL+ +
Sbjct: 73  ENNIPVFAIEGNHDRTQRGPSVLHLLEDLGLLYVI 107



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>EDG4_HUMAN (Q9HBW0) Lysophosphatidic acid receptor Edg-4 (LPA receptor 2)|
           (LPA-2)
          Length = 351

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 77  LLRAISLINIA--SCTRCGVRRFFIRLICCCSS*YLPRCGESMRFTPS 214
           L  A SL+N A  SC    +RR F RL+CC       R  ES+ +T S
Sbjct: 283 LAEANSLVNAAVYSCRDAEMRRTFRRLLCCACLRQSTR--ESVHYTSS 328



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>SPAG8_HUMAN (Q99932) Sperm-associated antigen 8 (Sperm membrane protein 1)|
           (SMP-1) (HSD-1) (Sperm membrane protein BS-84)
          Length = 426

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 113 RRRC*LS*WHEEGCDHNLDLLPSMANGGTS 24
           R +C L  W EE   ++LD +PSM +G  S
Sbjct: 277 RGQCLLYNWEEERATNHLDQVPSMQDGSES 306



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>KRA42_HUMAN (Q9BYR5) Keratin-associated protein 4-2 (Keratin-associated protein|
           4.2) (Ultrahigh sulfur keratin-associated protein 4.2)
          Length = 136

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +2

Query: 20  RGRCLRLPSMAID----PGCGHSLLRAISLINIASCTRCGVRRFFIRLICCCSS*YLPRC 187
           R  C R PS  +     P C  S+    +  + + C     R    R  CC SS + P+C
Sbjct: 32  RTTCCR-PSCCVSSCCRPQCCQSVCCQPTCCSPSCCQTTCCRTTCCRPSCCVSSCFRPQC 90

Query: 188 GESMRFTPSC 217
            +S+   P+C
Sbjct: 91  CQSVCCQPTC 100



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>EDG4_MACFA (Q95KH4) Lysophosphatidic acid receptor Edg-4 (LPA receptor 2)|
           (LPA-2)
          Length = 351

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 77  LLRAISLINIA--SCTRCGVRRFFIRLICC 160
           L  A SL+N A  SC    +RR F RL+CC
Sbjct: 283 LAEANSLVNAAVYSCRDAEMRRTFRRLLCC 312



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>MRE11_PYRAB (Q9UZC9) DNA double-strand break repair protein mre11|
          Length = 423

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 19  EREVPPFAIDGNRSRLWSQPSSCHQLNQHRLLH 117
           +  +P FAI+GN  R    PS  H L    LL+
Sbjct: 83  DNNIPVFAIEGNHDRTQRGPSILHLLEDLGLLY 115



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>SP8_MOUSE (Q8BMJ8) Transcription factor Sp8|
          Length = 486

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = +2

Query: 41  PSMAIDP--GCGHSLLRAISLINIASCTRCGVRRFFIRLICCCSS*YLPRCGESMRFTPS 214
           P  A  P  G G S+L A     +    R   RR+  R  C C     P C E+ R  P+
Sbjct: 292 PDSAPSPLAGAGSSMLSAGPAAQLGGSPRSSARRYSGRATCDC-----PNCQEAERLGPA 346


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,396,424
Number of Sequences: 219361
Number of extensions: 503376
Number of successful extensions: 1250
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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