ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38p04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_549891.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.2
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
3dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
4dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
5dbj|AK073168.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
6gb|AC167696.2| Reniera sp. JGI-2005 clone JGIBAYC-5E8, complete ... 40 4.9
7gb|AC025183.5| Homo sapiens chromosome 5 clone CTD-2194D22, comp... 40 4.9
8gb|DQ397855.1| Cenarchaeum symbiosum clone C20G06, complete sequ... 40 4.9
9gb|DQ397843.1| Cenarchaeum symbiosum clone C15C12, complete sequ... 40 4.9
10gb|DQ397833.1| Cenarchaeum symbiosum clone C02E10, complete sequ... 40 4.9
11gb|DQ397831.1| Cenarchaeum symbiosum clone C02C04, complete sequ... 40 4.9
12dbj|AB178027.1| Ralstonia solanacearum insertion sequence IS1424... 40 4.9
13emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 4.9
14emb|AL845467.3| Mouse DNA sequence from clone RP23-435G20 on chr... 40 4.9 
>ref|XM_549891.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2670

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 245 gcggcggcgctccagcagacg 265
           |||||||||||||||||||||
Sbjct: 57  gcggcggcgctccagcagacg 77
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 245    gcggcggcgctccagcagacg 265
              |||||||||||||||||||||
Sbjct: 736966 gcggcggcgctccagcagacg 736946
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>dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1212_B09
          Length = 130728

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 245   gcggcggcgctccagcagacg 265
             |||||||||||||||||||||
Sbjct: 14166 gcggcggcgctccagcagacg 14146
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>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0032H19
          Length = 126434

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 245    gcggcggcgctccagcagacg 265
              |||||||||||||||||||||
Sbjct: 120710 gcggcggcgctccagcagacg 120690
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>dbj|AK073168.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023H13, full
           insert sequence
          Length = 2671

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 245 gcggcggcgctccagcagacg 265
           |||||||||||||||||||||
Sbjct: 56  gcggcggcgctccagcagacg 76
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>gb|AC167696.2| Reniera sp. JGI-2005 clone JGIBAYC-5E8, complete sequence
          Length = 38144

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  atatactactactttatcta 226
            ||||||||||||||||||||
Sbjct: 8494 atatactactactttatcta 8513
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>gb|AC025183.5| Homo sapiens chromosome 5 clone CTD-2194D22, complete sequence
          Length = 52443

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   cacttcatggaacttcatgg 339
             ||||||||||||||||||||
Sbjct: 38215 cacttcatggaacttcatgg 38234
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>gb|DQ397855.1| Cenarchaeum symbiosum clone C20G06, complete sequence
          Length = 39443

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 238  ctacaaggcggcggcgctccagca 261
            ||||||||||| ||||||||||||
Sbjct: 3573 ctacaaggcgggggcgctccagca 3596
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>gb|DQ397843.1| Cenarchaeum symbiosum clone C15C12, complete sequence
          Length = 41188

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 238   ctacaaggcggcggcgctccagca 261
             ||||||||||| ||||||||||||
Sbjct: 37821 ctacaaggcgggggcgctccagca 37798
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>gb|DQ397833.1| Cenarchaeum symbiosum clone C02E10, complete sequence
          Length = 42750

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 238   ctacaaggcggcggcgctccagca 261
             ||||||||||| ||||||||||||
Sbjct: 12156 ctacaaggcgggggcgctccagca 12179
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>gb|DQ397831.1| Cenarchaeum symbiosum clone C02C04, complete sequence
          Length = 42751

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 238   ctacaaggcggcggcgctccagca 261
             ||||||||||| ||||||||||||
Sbjct: 30596 ctacaaggcgggggcgctccagca 30573
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>dbj|AB178027.1| Ralstonia solanacearum insertion sequence IS1424 DNA
          Length = 4442

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 246  cggcggcgctccagcagacg 265
            ||||||||||||||||||||
Sbjct: 1759 cggcggcgctccagcagacg 1740
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 246     cggcggcgctccagcagacg 265
               ||||||||||||||||||||
Sbjct: 1436944 cggcggcgctccagcagacg 1436925
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>emb|AL845467.3| Mouse DNA sequence from clone RP23-435G20 on chromosome 2, complete
             sequence
          Length = 201400

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   cttcatggaacttcatggtt 341
             ||||||||||||||||||||
Sbjct: 12545 cttcatggaacttcatggtt 12526


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,799,014
Number of Sequences: 3902068
Number of extensions: 2799014
Number of successful extensions: 48676
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48614
Number of HSP's gapped (non-prelim): 62
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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