ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38p01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY103682.1| Zea mays PCO122909 mRNA sequence 48 0.012
2gb|AC162881.2| Echinops telfairi, clone Echinops telfairi -24528... 40 3.0
3gb|AC148756.2| Medicago truncatula clone mth2-22d18, complete se... 40 3.0

>gb|AY103682.1| Zea mays PCO122909 mRNA sequence
          Length = 1641

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 196  acttcagtagggtcttcacgatggatttcacattca 231
            ||||||| ||||||||||| ||||||||||| ||||
Sbjct: 1382 acttcaggagggtcttcacaatggatttcacgttca 1347



to top

>gb|AC162881.2| Echinops telfairi, clone Echinops telfairi -24528857A5, complete
            sequence
          Length = 39811

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 30   cacagcagaataagttgacagcaa 53
            |||||||||||||| |||||||||
Sbjct: 4635 cacagcagaataagatgacagcaa 4658



to top

>gb|AC148756.2| Medicago truncatula clone mth2-22d18, complete sequence
          Length = 107160

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    aaaccaaacgagaaaaacaa 108
             ||||||||||||||||||||
Sbjct: 41908 aaaccaaacgagaaaaacaa 41889


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,815,371
Number of Sequences: 3902068
Number of extensions: 1815371
Number of successful extensions: 27243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27240
Number of HSP's gapped (non-prelim): 3
length of query: 231
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 209
effective length of database: 17,147,199,772
effective search space: 3583764752348
effective search space used: 3583764752348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top