ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X60343.1|HVGADPH H.vulgare GADPH mRNA for glycolytic glycera... 436 e-119
2gb|AY290728.1| Triticum aestivum glyceraldehyde 3-phosphate dehy... 137 2e-29
3ref|XM_479895.1| Oryza sativa (japonica cultivar-group), mRNA 72 9e-10
4ref|XM_507107.1| PREDICTED Oryza sativa (japonica cultivar-group... 72 9e-10
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 72 9e-10
6dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic D... 72 9e-10
7dbj|AK105038.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 9e-10
8dbj|AK103777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 9e-10
9dbj|AK100159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 9e-10
10dbj|AK071097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 9e-10
11gb|U31676.1|OSU31676 Oryza sativa clone glyceraldehyde-3-phospha... 72 9e-10
12gb|BT016387.1| Zea mays clone Contig220 mRNA sequence 60 3e-06
13emb|X73151.1|ZMGAPC2 Z.mays GapC2 gene 60 3e-06
14emb|X15596.1|ZMGPC1 Maize Gpc1 gene for glyceraldehyde-3-phospha... 60 3e-06
15gb|L13432.1|MZEGAPDB Zea mays GAPC2 glyceraldehyde-3-phosphate d... 60 3e-06
16gb|U45858.1|ZMU45858 Zea mays glyceraldehyde-3-phosphate dehydro... 60 3e-06
17gb|U45855.1|ZMU45855 Zea mays glyceraldehyde-3-phosphate dehydro... 60 3e-06
18gb|BT016419.1| Zea mays clone Contig252 mRNA sequence 56 5e-05
19gb|AY109359.1| Zea mays CL2022_2 mRNA sequence 56 5e-05
20emb|X07156.1|ZMCGAPDH Maize mRNA for cytosolic GAPDH (GapC) glyc... 48 0.012
21emb|CT009760.5| Mouse DNA sequence from clone RP23-92K14 on chro... 44 0.19
22gb|AC154775.2| Mus musculus BAC clone RP23-100F7 from chromosome... 44 0.19
23gb|BT016420.1| Zea mays clone Contig253 mRNA sequence 42 0.77
24gb|BT016360.1| Zea mays clone Contig193 mRNA sequence 42 0.77
25gb|L13431.1|MZEGAPDA Zea mays glyceraldehyde-3-phosphate dehydro... 42 0.77
26emb|X73152.1|ZMGAPC4 Z.mays GapC4 gene 42 0.77
27gb|AY109397.1| Zea mays CL2022_1 mRNA sequence 42 0.77
28gb|U45857.1|ZMU45857 Zea mays glyceraldehyde-3-phosphate dehydro... 42 0.77
29gb|U45856.1|ZMU45856 Zea mays glyceraldehyde-3-phosphate dehydro... 42 0.77
30gb|AY821550.1| Musa acuminata glyceraldehyde-3-phosphate dehydro... 40 3.0
31ref|NM_001034020.1| Rattus norvegicus synapsin II (Syn2), transc... 40 3.0
32ref|NM_019159.1| Rattus norvegicus synapsin II (Syn2), transcrip... 40 3.0
33ref|XM_590075.2| PREDICTED: Bos taurus similar to Synapsin-2 (Sy... 40 3.0
34gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cance... 40 3.0
35emb|X15062.1|YFVRNA Yellow fever virus genomic RNA 40 3.0
36gb|DQ118157.1| Yellow fever virus isolate YF-AVD2791-93F/04 from... 40 3.0
37emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4,... 40 3.0
38emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4,... 40 3.0
39gb|AY572535.1| Yellow fever virus strain Gambia 2001, complete g... 40 3.0
40gb|AY603338.1| Yellow fever virus strain Ivory Coast 1999, compl... 40 3.0
41gb|DQ083205.1| Oryza sativa (indica cultivar-group) clone 6S6G29... 40 3.0
42gb|AC023886.7| Homo sapiens BAC clone RP11-402J6 from 4, complet... 40 3.0
43emb|X03700.1|FLYF17DG Yellow fever virus complete genome, 17D va... 40 3.0
44gb|AY640589.1| Yellow fever virus strain ASIBI, complete genome 40 3.0
45dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
46dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
47gb|AC104792.5| Homo sapiens BAC clone RP11-202B22 from 2, comple... 40 3.0
48dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
49gb|U52413.1|YFU52413 Yellow fever virus Senegal65 core, pre-memb... 40 3.0
50gb|U52404.1|YFU52404 Yellow fever virus Panama74 core, pre-membr... 40 3.0
51gb|U52389.1|YFU52389 Yellow fever virus Brazil35 core, pre-membr... 40 3.0
52dbj|AK064960.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.0
53dbj|AK062122.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.0
54emb|AL627350.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 3.0
55gb|DQ322642.1| VEEV replicon vector YFV-C3opt, complete sequence 40 3.0
56gb|DQ322640.1| VEEV replicon vector YFV-C3opt-NS2mut, complete s... 40 3.0
57gb|DQ322638.1| VEEV replicon vector YFV-C2, complete sequence 40 3.0
58gb|DQ322636.1| VEEV replicon vector YFV-C2, complete sequence 40 3.0
59gb|DQ322634.1| YFV replicon vector FMDV-2A-def, complete sequence 40 3.0
60gb|DQ322633.1| YFV replicon vector capsid-def, complete sequence 40 3.0
61gb|U17067.1|YFU17067 Yellow fever virus vaccine strain 17D-213, ... 40 3.0
62gb|U17066.1|YFU17066 Yellow fever virus vaccine strain 17DD, com... 40 3.0
63gb|AF052447.1|AF052447 Yellow fever virus clone HONG11 polyprote... 40 3.0
64gb|AF052446.1|AF052446 Yellow fever virus clone HONG10 polyprote... 40 3.0
65gb|AF052445.1|AF052445 Yellow fever virus clone HONG9 polyprotei... 40 3.0
66gb|AF052444.1|AF052444 Yellow fever virus clone HONG8 polyprotei... 40 3.0
67gb|AF052442.1|AF052442 Yellow fever virus clone HONG6 polyprotei... 40 3.0
68gb|AF052440.1|AF052440 Yellow fever virus clone HONG4 polyprotei... 40 3.0
69gb|AF052439.1|AF052439 Yellow fever virus clone HONG3 polyprotei... 40 3.0
70gb|AF052438.1|AF052438 Yellow fever virus clone HONG2 polyprotei... 40 3.0
71gb|AF052437.1|AF052437 Yellow fever virus clone HONG1 polyprotei... 40 3.0
72gb|U21056.1|YFU21056 Yellow fever virus French viscerotropic str... 40 3.0
73gb|U21055.1|YFU21055 Yellow fever virus French neurotropic strai... 40 3.0
74gb|L06480.1|YFVCAPSIDM Yellow fever virus capsid protein, M prot... 40 3.0
75gb|M27926.1|RATS2B Rat synapsin 2b mRNA, complete cds 40 3.0
76gb|M27925.1|RATS2A Rat synapsin 2a mRNA, complete cds 40 3.0 
>emb|X60343.1|HVGADPH H.vulgare GADPH mRNA for glycolytic glyceraldehyde-3-phosphate
            dehydrogenase
          Length = 1365

 Score =  436 bits (220), Expect = e-119
 Identities = 227/228 (99%), Gaps = 1/228 (0%)
 Strand = Plus / Minus

                                                                        
Query: 11   aacagaagttgtaaatggactgaacgatttacataaat-aagagtacttgactagcaact 69
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1247 aacagaagttgtaaatggactgaacgatttacataaatcaagagtacttgactagcaact 1188

                                                                        
Query: 70   cggtgcggaaaaacagatggtaactcatgtccaactaacatgaaccaggcgtctagcgac 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1187 cggtgcggaaaaacagatggtaactcatgtccaactaacatgaaccaggcgtctagcgac 1128

                                                                        
Query: 130  accatccacatttattcccatagacaaaggggcacctctgaccaggcgccacaaggaaag 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1127 accatccacatttattcccatagacaaaggggcacctctgaccaggcgccacaaggaaag 1068

                                                            
Query: 190  cagaacgctctactgggtcttggccatgtggcggatcaggtcgacaac 237
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 cagaacgctctactgggtcttggccatgtggcggatcaggtcgacaac 1020
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>gb|AY290728.1| Triticum aestivum glyceraldehyde 3-phosphate dehydrogenase-like
           mRNA, partial sequence
          Length = 496

 Score =  137 bits (69), Expect = 2e-29
 Identities = 144/168 (85%), Gaps = 17/168 (10%)
 Strand = Plus / Minus

                                                                       
Query: 79  aaaacagatggtaactcatgtccaactaacatgaaccagg---cgtctagcgacaccatc 135
           |||||||| |||||||||||||||||||||||||||||||   ||||| |||||||||||
Sbjct: 406 aaaacagaaggtaactcatgtccaactaacatgaaccaggcgtcgtctggcgacaccatc 347

                                                                       
Query: 136 cacattta---ttcccatagacaa---aggggcacctctgaccaggcgccacaaggaaag 189
           ||||||||   ||| |||||||||   |||| ||||||||||||        ||||||| 
Sbjct: 346 cacatttattcttcgcatagacaaagcagggacacctctgacca--------aaggaaat 295

                                                           
Query: 190 cagaacgctctactgggtcttggccatgtggcggatcaggtcgacaac 237
           ||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 294 cagaacgctctactgagtcttggccatgtggcggatcagatcgacaac 247
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>ref|XM_479895.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1356

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                
Query: 198  tctactgggtcttggccatgtggcggatcaggtcga 233
            ||||||||||||||||||||||||||||||||||||
Sbjct: 1059 tctactgggtcttggccatgtggcggatcaggtcga 1024
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>ref|XM_507107.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1163_G08.15 mRNA
          Length = 1518

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                
Query: 198  tctactgggtcttggccatgtggcggatcaggtcga 233
            ||||||||||||||||||||||||||||||||||||
Sbjct: 1092 tctactgggtcttggccatgtggcggatcaggtcga 1057
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                   
Query: 198     tctactgggtcttggccatgtggcggatcaggtcga 233
               ||||||||||||||||||||||||||||||||||||
Sbjct: 1522421 tctactgggtcttggccatgtggcggatcaggtcga 1522386
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>dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1163_G08
          Length = 150676

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                 
Query: 198   tctactgggtcttggccatgtggcggatcaggtcga 233
             ||||||||||||||||||||||||||||||||||||
Sbjct: 49909 tctactgggtcttggccatgtggcggatcaggtcga 49874
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>dbj|AK105038.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C12, full
           insert sequence
          Length = 455

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                               
Query: 198 tctactgggtcttggccatgtggcggatcaggtcga 233
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tctactgggtcttggccatgtggcggatcaggtcga 201
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>dbj|AK103777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033144F10, full
            insert sequence
          Length = 1356

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                
Query: 198  tctactgggtcttggccatgtggcggatcaggtcga 233
            ||||||||||||||||||||||||||||||||||||
Sbjct: 1059 tctactgggtcttggccatgtggcggatcaggtcga 1024
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>dbj|AK100159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020L08, full
            insert sequence
          Length = 1783

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                
Query: 198  tctactgggtcttggccatgtggcggatcaggtcga 233
            ||||||||||||||||||||||||||||||||||||
Sbjct: 1530 tctactgggtcttggccatgtggcggatcaggtcga 1495
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>dbj|AK071097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080G06, full
            insert sequence
          Length = 1518

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                
Query: 198  tctactgggtcttggccatgtggcggatcaggtcga 233
            ||||||||||||||||||||||||||||||||||||
Sbjct: 1092 tctactgggtcttggccatgtggcggatcaggtcga 1057
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>gb|U31676.1|OSU31676 Oryza sativa clone glyceraldehyde-3-phosphate dehydrogenase (Gpc)
            mRNA, complete cds
          Length = 1326

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                
Query: 198  tctactgggtcttggccatgtggcggatcaggtcga 233
            ||||||||||||||||||||||||||||||||||||
Sbjct: 1043 tctactgggtcttggccatgtggcggatcaggtcga 1008
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>gb|BT016387.1| Zea mays clone Contig220 mRNA sequence
          Length = 1571

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 197  ctctactgggtcttggccatgtggcggatcaggtcgac 234
            |||||||||||||||  |||||||||||||||||||||
Sbjct: 1242 ctctactgggtcttgaacatgtggcggatcaggtcgac 1205
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>emb|X73151.1|ZMGAPC2 Z.mays GapC2 gene
          Length = 6166

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 197  ctctactgggtcttggccatgtggcggatcaggtcgac 234
            |||||||||||||||  |||||||||||||||||||||
Sbjct: 5814 ctctactgggtcttgaacatgtggcggatcaggtcgac 5777
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>emb|X15596.1|ZMGPC1 Maize Gpc1 gene for glyceraldehyde-3-phosphate dehydrogenase (GADPH)
            subunit C
          Length = 5955

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 197  ctctactgggtcttggccatgtggcggatcaggtcgac 234
            |||||||||||||||  |||||||||||||||||||||
Sbjct: 5494 ctctactgggtcttgaacatgtggcggatcaggtcgac 5457
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>gb|L13432.1|MZEGAPDB Zea mays GAPC2 glyceraldehyde-3-phosphate dehydrogenase mRNA,
           partial cds
          Length = 971

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 197 ctctactgggtcttggccatgtggcggatcaggtcgac 234
           |||||||||||||||  |||||||||||||||||||||
Sbjct: 747 ctctactgggtcttgaacatgtggcggatcaggtcgac 710
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>gb|U45858.1|ZMU45858 Zea mays glyceraldehyde-3-phosphate dehydrogenase (gpc2) gene,
            complete cds
          Length = 4590

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 197  ctctactgggtcttggccatgtggcggatcaggtcgac 234
            |||||||||||||||  |||||||||||||||||||||
Sbjct: 4473 ctctactgggtcttgaacatgtggcggatcaggtcgac 4436
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>gb|U45855.1|ZMU45855 Zea mays glyceraldehyde-3-phosphate dehydrogenase GAPC2 (gpc2) mRNA,
            complete cds
          Length = 1307

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 197  ctctactgggtcttggccatgtggcggatcaggtcgac 234
            |||||||||||||||  |||||||||||||||||||||
Sbjct: 1082 ctctactgggtcttgaacatgtggcggatcaggtcgac 1045
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>gb|BT016419.1| Zea mays clone Contig252 mRNA sequence
          Length = 1442

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 199  ctactgggtcttggccatgtggcggatcaggtcgac 234
            |||||||||||||  |||||||||||||||||||||
Sbjct: 1080 ctactgggtcttgaacatgtggcggatcaggtcgac 1045
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>gb|AY109359.1| Zea mays CL2022_2 mRNA sequence
          Length = 3495

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 199  ctactgggtcttggccatgtggcggatcaggtcgac 234
            |||||||||||||  |||||||||||||||||||||
Sbjct: 3120 ctactgggtcttgaacatgtggcggatcaggtcgac 3085
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>emb|X07156.1|ZMCGAPDH Maize mRNA for cytosolic GAPDH (GapC) glyceraldehyde-3-phosphate
            dehydrogenase
          Length = 1305

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 199  ctactgggtcttggccatgtggcggatcaggtcgac 234
            |||||||| ||||  |||||||||||||||||||||
Sbjct: 1088 ctactgggacttgaacatgtggcggatcaggtcgac 1053
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>emb|CT009760.5| Mouse DNA sequence from clone RP23-92K14 on chromosome 16, complete
              sequence
          Length = 212227

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 136    cacatttattcccatagacaaa 157
              ||||||||||||||||||||||
Sbjct: 118207 cacatttattcccatagacaaa 118228
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>gb|AC154775.2| Mus musculus BAC clone RP23-100F7 from chromosome 16, complete sequence
          Length = 192492

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 136    cacatttattcccatagacaaa 157
              ||||||||||||||||||||||
Sbjct: 186048 cacatttattcccatagacaaa 186069
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>gb|BT016420.1| Zea mays clone Contig253 mRNA sequence
          Length = 1831

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 214  catgtggcggatcaggtcgac 234
            |||||||||||||||||||||
Sbjct: 1073 catgtggcggatcaggtcgac 1053
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>gb|BT016360.1| Zea mays clone Contig193 mRNA sequence
          Length = 1293

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 214  catgtggcggatcaggtcgac 234
            |||||||||||||||||||||
Sbjct: 1060 catgtggcggatcaggtcgac 1040
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>gb|L13431.1|MZEGAPDA Zea mays glyceraldehyde-3-phosphate dehydrogenase mRNA, partial cds
          Length = 899

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 214 catgtggcggatcaggtcgac 234
           |||||||||||||||||||||
Sbjct: 691 catgtggcggatcaggtcgac 671
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>emb|X73152.1|ZMGAPC4 Z.mays GapC4 gene
          Length = 4929

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 214  catgtggcggatcaggtcgac 234
            |||||||||||||||||||||
Sbjct: 4474 catgtggcggatcaggtcgac 4454
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>gb|AY109397.1| Zea mays CL2022_1 mRNA sequence
          Length = 2408

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 214  catgtggcggatcaggtcgac 234
            |||||||||||||||||||||
Sbjct: 1890 catgtggcggatcaggtcgac 1870
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>gb|U45857.1|ZMU45857 Zea mays glyceraldehyde-3-phosphate dehydrogenase GAPC4 (gpc4) mRNA,
            complete cds
          Length = 1232

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 214  catgtggcggatcaggtcgac 234
            |||||||||||||||||||||
Sbjct: 1008 catgtggcggatcaggtcgac 988
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>gb|U45856.1|ZMU45856 Zea mays glyceraldehyde-3-phosphate dehydrogenase GAPC3 (gpc3) mRNA,
            complete cds
          Length = 1281

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 214  catgtggcggatcaggtcgac 234
            |||||||||||||||||||||
Sbjct: 1072 catgtggcggatcaggtcgac 1052
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>gb|AY821550.1| Musa acuminata glyceraldehyde-3-phosphate dehydrogenase mRNA,
           partial cds
          Length = 993

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 catgtggcggatcaggtcga 233
           ||||||||||||||||||||
Sbjct: 993 catgtggcggatcaggtcga 974
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>ref|NM_001034020.1| Rattus norvegicus synapsin II (Syn2), transcript variant 1, mRNA
          Length = 2648

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  acagaagttgtaaatggact 31
           ||||||||||||||||||||
Sbjct: 802 acagaagttgtaaatggact 783
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>ref|NM_019159.1| Rattus norvegicus synapsin II (Syn2), transcript variant 2, mRNA
          Length = 1754

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  acagaagttgtaaatggact 31
           ||||||||||||||||||||
Sbjct: 802 acagaagttgtaaatggact 783
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>ref|XM_590075.2| PREDICTED: Bos taurus similar to Synapsin-2 (Synapsin II)
           (LOC512537), mRNA
          Length = 1563

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  acagaagttgtaaatggact 31
           ||||||||||||||||||||
Sbjct: 477 acagaagttgtaaatggact 458
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>gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 128301

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 91    aactcatgtccaactaacatgaac 114
             |||||||||||||| |||||||||
Sbjct: 82729 aactcatgtccaacaaacatgaac 82752
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>emb|X15062.1|YFVRNA Yellow fever virus genomic RNA
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|DQ118157.1| Yellow fever virus isolate YF-AVD2791-93F/04 from Spain, complete
           genome
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09, complete
              sequence
          Length = 120583

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 198    tctactgggtcttggccatgtggcggatcaggtcgacaac 237
              |||||||||| |||  |||||| ||||||||||| |||||
Sbjct: 106476 tctactgggtgttgtacatgtgacggatcaggtcaacaac 106437
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>emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30,
           complete sequence
          Length = 141128

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 198 tctactgggtcttggccatgtggcggatcaggtcgacaac 237
           |||||||||| |||  |||||| ||||||||||| |||||
Sbjct: 475 tctactgggtgttgtacatgtgacggatcaggtcaacaac 436
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>gb|AY572535.1| Yellow fever virus strain Gambia 2001, complete genome
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|AY603338.1| Yellow fever virus strain Ivory Coast 1999, complete genome
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|DQ083205.1| Oryza sativa (indica cultivar-group) clone 6S6G29 mRNA sequence
          Length = 450

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 198 tctactgggtcttggccatgtggcggatcaggtcgacaac 237
           |||||||||| |||  |||||| ||||||||||| |||||
Sbjct: 286 tctactgggtgttgtacatgtgacggatcaggtcaacaac 247
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>gb|AC023886.7| Homo sapiens BAC clone RP11-402J6 from 4, complete sequence
          Length = 179697

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     gaaaaacagatggtaactca 96
              ||||||||||||||||||||
Sbjct: 107786 gaaaaacagatggtaactca 107805
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>emb|X03700.1|FLYF17DG Yellow fever virus complete genome, 17D vaccine strain
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|AY640589.1| Yellow fever virus strain ASIBI, complete genome
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 198      tctactgggtcttggccatgtggcggatcaggtcgacaac 237
                |||||||||| |||  |||||| ||||||||||| |||||
Sbjct: 24284064 tctactgggtgttgtacatgtgacggatcaggtcaacaac 24284025
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 33       aacgatttacataaataaga 52
                ||||||||||||||||||||
Sbjct: 16348041 aacgatttacataaataaga 16348060
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>gb|AC104792.5| Homo sapiens BAC clone RP11-202B22 from 2, complete sequence
          Length = 53135

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   ttattcccatagacaaaggg 160
             ||||||||||||||||||||
Sbjct: 43925 ttattcccatagacaaaggg 43906
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>dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0473C09
          Length = 141066

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    aacgatttacataaataaga 52
             ||||||||||||||||||||
Sbjct: 54097 aacgatttacataaataaga 54116
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>gb|U52413.1|YFU52413 Yellow fever virus Senegal65 core, pre-membrane, membrane and
           envelope proteins mRNA, partial cds
          Length = 1320

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|U52404.1|YFU52404 Yellow fever virus Panama74 core, pre-membrane, membrane and
           envelope proteins mRNA, partial cds
          Length = 1320

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|U52389.1|YFU52389 Yellow fever virus Brazil35 core, pre-membrane, membrane and
           envelope proteins mRNA, partial cds
          Length = 1320

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>dbj|AK064960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A14, full
            insert sequence
          Length = 1326

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 198  tctactgggtcttggccatgtggcggatcaggtcgacaac 237
            |||||||||| |||  |||||| ||||||||||| |||||
Sbjct: 1098 tctactgggtgttgtacatgtgacggatcaggtcaacaac 1059
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>dbj|AK062122.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D02, full
           insert sequence
          Length = 936

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 198 tctactgggtcttggccatgtggcggatcaggtcgacaac 237
           |||||||||| |||  |||||| ||||||||||| |||||
Sbjct: 705 tctactgggtgttgtacatgtgacggatcaggtcaacaac 666
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>emb|AL627350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0302E05, complete
             sequence
          Length = 61795

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 198   tctactgggtcttggccatgtggcggatcaggtcgacaac 237
             |||||||||| |||  |||||| ||||||||||| |||||
Sbjct: 12368 tctactgggtgttgtacatgtgacggatcaggtcaacaac 12329
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>gb|DQ322642.1| VEEV replicon vector YFV-C3opt, complete sequence
          Length = 12840

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   ggtgcggaaaaacagatggt 90
            ||||||||||||||||||||
Sbjct: 7942 ggtgcggaaaaacagatggt 7961
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>gb|DQ322640.1| VEEV replicon vector YFV-C3opt-NS2mut, complete sequence
          Length = 12840

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   ggtgcggaaaaacagatggt 90
            ||||||||||||||||||||
Sbjct: 7942 ggtgcggaaaaacagatggt 7961
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>gb|DQ322638.1| VEEV replicon vector YFV-C2, complete sequence
          Length = 12840

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   ggtgcggaaaaacagatggt 90
            ||||||||||||||||||||
Sbjct: 7942 ggtgcggaaaaacagatggt 7961
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>gb|DQ322636.1| VEEV replicon vector YFV-C2, complete sequence
          Length = 10928

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   ggtgcggaaaaacagatggt 90
            ||||||||||||||||||||
Sbjct: 7942 ggtgcggaaaaacagatggt 7961
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>gb|DQ322634.1| YFV replicon vector FMDV-2A-def, complete sequence
          Length = 14325

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   ggtgcggaaaaacagatggt 90
            ||||||||||||||||||||
Sbjct: 1040 ggtgcggaaaaacagatggt 1059
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>gb|DQ322633.1| YFV replicon vector capsid-def, complete sequence
          Length = 14295

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   ggtgcggaaaaacagatggt 90
            ||||||||||||||||||||
Sbjct: 1010 ggtgcggaaaaacagatggt 1029
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>gb|U17067.1|YFU17067 Yellow fever virus vaccine strain 17D-213, complete genome
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|U17066.1|YFU17066 Yellow fever virus vaccine strain 17DD, complete genome
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|AF052447.1|AF052447 Yellow fever virus clone HONG11 polyprotein gene, partial cds
          Length = 2452

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|AF052446.1|AF052446 Yellow fever virus clone HONG10 polyprotein gene, complete cds
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|AF052445.1|AF052445 Yellow fever virus clone HONG9 polyprotein gene, complete cds
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|AF052444.1|AF052444 Yellow fever virus clone HONG8 polyprotein gene, complete cds
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|AF052442.1|AF052442 Yellow fever virus clone HONG6 polyprotein gene, partial cds
          Length = 2452

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|AF052440.1|AF052440 Yellow fever virus clone HONG4 polyprotein gene, partial cds
          Length = 2452

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
to top
>gb|AF052439.1|AF052439 Yellow fever virus clone HONG3 polyprotein gene, complete cds
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
to top
>gb|AF052438.1|AF052438 Yellow fever virus clone HONG2 polyprotein gene, complete cds
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|AF052437.1|AF052437 Yellow fever virus clone HONG1 polyprotein gene, complete cds
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|U21056.1|YFU21056 Yellow fever virus French viscerotropic strain, complete genome
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
to top
>gb|U21055.1|YFU21055 Yellow fever virus French neurotropic strain, complete genome
          Length = 10862

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 490 ggtgcggaaaaacagatggt 509
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>gb|L06480.1|YFVCAPSIDM Yellow fever virus capsid protein, M protein, and envelope protein
           mRNAs
          Length = 2367

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  ggtgcggaaaaacagatggt 90
           ||||||||||||||||||||
Sbjct: 405 ggtgcggaaaaacagatggt 424
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>gb|M27926.1|RATS2B Rat synapsin 2b mRNA, complete cds
          Length = 1754

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  acagaagttgtaaatggact 31
           ||||||||||||||||||||
Sbjct: 802 acagaagttgtaaatggact 783
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>gb|M27925.1|RATS2A Rat synapsin 2a mRNA, complete cds
          Length = 2648

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  acagaagttgtaaatggact 31
           ||||||||||||||||||||
Sbjct: 802 acagaagttgtaaatggact 783


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,688,971
Number of Sequences: 3902068
Number of extensions: 1688971
Number of successful extensions: 29516
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29401
Number of HSP's gapped (non-prelim): 113
length of query: 237
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 215
effective length of database: 17,147,199,772
effective search space: 3686647950980
effective search space used: 3686647950980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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