>gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's Hospital Oakland
           Research Institute) complete sequence
          Length = 157107

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 26  aaatctttaacataatccaca 46
           |||||||||||||||||||||
Sbjct: 947 aaatctttaacataatccaca 967

>ref|XM_795376.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
            LOC587622 (LOC587622), mRNA
          Length = 1578

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   ctctcaacatcatagacggt 75
            ||||||||||||||||||||
Sbjct: 1519 ctctcaacatcatagacggt 1500

>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      aaatctttaacataatccac 45
               ||||||||||||||||||||
Sbjct: 1390795 aaatctttaacataatccac 1390776

>emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in linkage group 5,
             complete sequence
          Length = 178961

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    ttaaatctttaacataatccacat 47
             |||||||||||||||| |||||||
Sbjct: 54407 ttaaatctttaacatagtccacat 54430

>gb|AC006227.1|AC006227 Homo sapiens, clone hRPK.16_A_1, complete sequence
          Length = 153337

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 17    tgacatcttaaatctttaacataa 40
             |||||||| |||||||||||||||
Sbjct: 76602 tgacatctgaaatctttaacataa 76579

>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 23      cttaaatctttaacataat 41
               |||||||||||||||||||
Sbjct: 1648959 cttaaatctttaacataat 1648941

>emb|CR933519.4| Zebrafish DNA sequence from clone DKEY-167I21 in linkage group 1,
             complete sequence
          Length = 77589

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 17    tgacatcttaaatctttaa 35
             |||||||||||||||||||
Sbjct: 29595 tgacatcttaaatctttaa 29613

>gb|AY916130.1| Epidermophyton floccosum mitochondrion, complete genome
          Length = 30910

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    cttaaatctttaacataat 41
             |||||||||||||||||||
Sbjct: 27182 cttaaatctttaacataat 27164

>emb|Y18476.1|TRU18476 Trichophyton rubrum mitochondrial cytb gene and NADH1 to NADH5 genes
          Length = 9764

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 23   cttaaatctttaacataat 41
            |||||||||||||||||||
Sbjct: 9643 cttaaatctttaacataat 9625

>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 23      cttaaatctttaacataat 41
               |||||||||||||||||||
Sbjct: 1613176 cttaaatctttaacataat 1613158

>gb|AC006419.4| Arabidopsis thaliana chromosome 2 clone F3K12 map mi421, complete
             sequence
          Length = 113960

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    ttaacataatccacatcat 50
             |||||||||||||||||||
Sbjct: 57550 ttaacataatccacatcat 57568

>gb|AY057222.1| Borrelia burgdorferi IA flagellin A (flaA) gene, complete cds
          Length = 1026

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 22  tcttaaatctttaacataa 40
           |||||||||||||||||||
Sbjct: 795 tcttaaatctttaacataa 777

>gb|AY057224.1| Borrelia garinii 46 flagellin A (flaA) gene, complete cds
          Length = 1029

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 22  tcttaaatctttaacataa 40
           |||||||||||||||||||
Sbjct: 795 tcttaaatctttaacataa 777

>emb|CR386712.1| Gallus gallus finished cDNA, clone ChEST303e18
          Length = 920

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 20  catcttaaatctttaacat 38
           |||||||||||||||||||
Sbjct: 363 catcttaaatctttaacat 345

>gb|AC150241.3| Rhinolophus ferrumequinum clone VMRC7-311G24, complete sequence
          Length = 174113

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 77     actttccaggtgaaggcca 95
              |||||||||||||||||||
Sbjct: 142784 actttccaggtgaaggcca 142766

>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence
          Length = 186961

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 15     tttgacatcttaaatctttaacataat 41
              |||||||||||| |||||||| |||||
Sbjct: 118355 tttgacatcttatatctttaaaataat 118381

>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 77      actttccaggtgaaggcca 95
               |||||||||||||||||||
Sbjct: 1071555 actttccaggtgaaggcca 1071537

>gb|AE000783.1| Borrelia burgdorferi B31, complete genome
          Length = 910724

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 22     tcttaaatctttaacataa 40
              |||||||||||||||||||
Sbjct: 706374 tcttaaatctttaacataa 706356

>gb|AY212943.1| Taenia solium from India diagnostic antigen GP50 (GP50) gene, partial
            cds
          Length = 3193

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 14   atttgacatcttaaatctt 32
            |||||||||||||||||||
Sbjct: 3118 atttgacatcttaaatctt 3100

>gb|U62900.1|BBU62900 Borrelia burgdorferi flagellar filament outsheath protein (flaA)
            gene, complete cds, and chemotaxis histidine kinase
            (cheA) gene, partial cds
          Length = 1655

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 22   tcttaaatctttaacataa 40
            |||||||||||||||||||
Sbjct: 1267 tcttaaatctttaacataa 1249


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,195,271
Number of Sequences: 3902068
Number of extensions: 1195271
Number of successful extensions: 83089
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83016
Number of HSP's gapped (non-prelim): 73
length of query: 163
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 141
effective length of database: 17,147,199,772
effective search space: 2417755167852
effective search space used: 2417755167852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)