ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39d15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_471148.1| Oryza sativa (japonica cultivar-group), predic... 202 1e-48
2dbj|AK120404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 1e-48
3dbj|AK071693.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 1e-48
4gb|BT016797.1| Zea mays clone Contig630 mRNA sequence 147 6e-32
5gb|AY104615.1| Zea mays PCO111783 mRNA sequence 147 6e-32
6emb|AL662964.3|OSJN00161 Oryza sativa genomic DNA, chromosome 4,... 113 8e-22
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 113 8e-22
8dbj|AK071986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
9gb|AC127245.5| Mus musculus BAC clone RP24-422M4 from chromosome... 44 0.60
10gb|AC144459.8| Medicago truncatula clone mth2-23o13, complete se... 44 0.60
11gb|AC132394.3| Mus musculus BAC clone RP23-391F16 from chromosom... 44 0.60
12gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 42 2.4
13gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 42 2.4
14gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 42 2.4
15gb|AC104686.2| Homo sapiens BAC clone RP11-74M11 from 4, complet... 42 2.4
16gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone mth2-4... 42 2.4
17gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 42 2.4
18emb|AL672290.16| Mouse DNA sequence from clone RP23-471M13 on ch... 42 2.4
19emb|AL121840.4|CNS01DSR Human chromosome 14 DNA sequence BAC C-2... 42 2.4
20emb|AL805971.6| Mouse DNA sequence from clone RP23-143H1 on chro... 42 2.4
21gb|AF024495.2| Caenorhabditis elegans cosmid R02D1, complete seq... 40 9.4
22gb|AC132323.3| Mus musculus BAC clone RP24-268M17 from chromosom... 40 9.4
23gb|AC110564.7| Mus musculus chromosome 12, clone RP23-292A16, co... 40 9.4
24emb|CT025837.1| Medicago truncatula chromosome 5 clone mth2-28f1... 40 9.4
25gb|AC163654.2| Mus musculus BAC clone RP23-259M14 from chromosom... 40 9.4
26gb|AC023736.4| Drosophila melanogaster X BAC RP98-4P5 (Roswell P... 40 9.4
27gb|AC108081.2| Homo sapiens chromosome 16 clone CTC-661I16, comp... 40 9.4
28gb|AC093844.3| Homo sapiens BAC clone RP11-451F20 from 4, comple... 40 9.4
29gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complet... 40 9.4
30emb|BX276188.11| Zebrafish DNA sequence from clone CH211-245A19,... 40 9.4
31emb|CR391759.1| Gallus gallus finished cDNA, clone ChEST469n6 40 9.4
32gb|AF125951.1| Caenorhabditis elegans cosmid D2063, complete seq... 40 9.4
33ref|NM_071793.4| Caenorhabditis elegans Nuclear Hormone Receptor... 40 9.4
34emb|BX119979.9| Zebrafish DNA sequence from clone CH211-201G8 in... 40 9.4
35gb|AC093744.2| Homo sapiens BAC clone RP11-25B14 from 4, complet... 40 9.4
36gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromos... 40 9.4
37emb|BX005484.7| Zebrafish DNA sequence from clone DKEY-25G12, co... 40 9.4
38emb|AL954695.14| Zebrafish DNA sequence from clone CH211-202N12 ... 40 9.4
39gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, c... 40 9.4
40gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 40 9.4
41gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 ... 40 9.4
42emb|AL161670.4|CNS01RHD Human chromosome 14 DNA sequence BAC R-8... 40 9.4
43emb|BX510915.23| Zebrafish DNA sequence from clone DKEY-24M12 in... 40 9.4
44emb|BX511083.17| Zebrafish DNA sequence from clone CH211-195F22 ... 40 9.4
45gb|AE016830.1| Enterococcus faecalis V583, complete genome 40 9.4
46emb|CR955007.2| Medicago truncatula chromosome 5 clone mte1-58b2... 40 9.4
47gb|AC111202.5| Mus musculus BAC clone RP23-338I3 from 9, complet... 40 9.4 
>ref|XM_471148.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3084

 Score =  202 bits (102), Expect = 1e-48
 Identities = 261/314 (83%)
 Strand = Plus / Minus

                                                                        
Query: 377  agctctgtgtttggcggtgaatctggagtatccaatccatgtaactgctggttccagcca 436
            ||||||| ||||||||||| || ||||||||||| |||||||||||||| || |||| ||
Sbjct: 3082 agctctgcgtttggcggtggatttggagtatccagtccatgtaactgctagtcccagaca 3023

                                                                        
Query: 437  tctggtcctcgacgaggttggacagaagcaagaagccctctcttggctgctcaccttgcc 496
            |||| |||||||| | ||| || |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 3022 tctgatcctcgaccaagttagatagaagcaaaaagccttctcttggctgttcaccctgac 2963

                                                                        
Query: 497  gtacaacacggggcagctggtaacacgaagaatccctctccctcagggctctttgtactg 556
            |||| || |||   |||||||   | |||| |||||||||||| ||||  | | ||| | 
Sbjct: 2962 gtacgacgcggcagagctggtggtaagaaggatccctctcccttagggtccctagtattt 2903

                                                                        
Query: 557  ccatgaagtttctcgagtgattgttgtcacattctctcaactgaatctttgatagatcag 616
             |||||| ||||| ||||  | ||| |||||||||||||| |||| |||||||||||| |
Sbjct: 2902 tcatgaaatttctggagtactcgttatcacattctctcaattgaacctttgatagatcgg 2843

                                                                        
Query: 617  ggaagtttgacaggctgactccaagaatgtcgttcatgagctcaggctggagcattctac 676
            ||||||||| || ||||||||||||||||| |||||  || |||||  ||||||| ||||
Sbjct: 2842 ggaagtttgccaagctgactccaagaatgttgttcacaagttcaggtgggagcatcctac 2783

                          
Query: 677  ctaaccatactagg 690
            ||||||||||||||
Sbjct: 2782 ctaaccatactagg 2769
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>dbj|AK120404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088L21, full
            insert sequence
          Length = 3678

 Score =  202 bits (102), Expect = 1e-48
 Identities = 261/314 (83%)
 Strand = Plus / Minus

                                                                        
Query: 377  agctctgtgtttggcggtgaatctggagtatccaatccatgtaactgctggttccagcca 436
            ||||||| ||||||||||| || ||||||||||| |||||||||||||| || |||| ||
Sbjct: 3208 agctctgcgtttggcggtggatttggagtatccagtccatgtaactgctagtcccagaca 3149

                                                                        
Query: 437  tctggtcctcgacgaggttggacagaagcaagaagccctctcttggctgctcaccttgcc 496
            |||| |||||||| | ||| || |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 3148 tctgatcctcgaccaagttagatagaagcaaaaagccttctcttggctgttcaccctgac 3089

                                                                        
Query: 497  gtacaacacggggcagctggtaacacgaagaatccctctccctcagggctctttgtactg 556
            |||| || |||   |||||||   | |||| |||||||||||| ||||  | | ||| | 
Sbjct: 3088 gtacgacgcggcagagctggtggtaagaaggatccctctcccttagggtccctagtattt 3029

                                                                        
Query: 557  ccatgaagtttctcgagtgattgttgtcacattctctcaactgaatctttgatagatcag 616
             |||||| ||||| ||||  | ||| |||||||||||||| |||| |||||||||||| |
Sbjct: 3028 tcatgaaatttctggagtactcgttatcacattctctcaattgaacctttgatagatcgg 2969

                                                                        
Query: 617  ggaagtttgacaggctgactccaagaatgtcgttcatgagctcaggctggagcattctac 676
            ||||||||| || ||||||||||||||||| |||||  || |||||  ||||||| ||||
Sbjct: 2968 ggaagtttgccaagctgactccaagaatgttgttcacaagttcaggtgggagcatcctac 2909

                          
Query: 677  ctaaccatactagg 690
            ||||||||||||||
Sbjct: 2908 ctaaccatactagg 2895
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>dbj|AK071693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108J23, full
            insert sequence
          Length = 1804

 Score =  202 bits (102), Expect = 1e-48
 Identities = 261/314 (83%)
 Strand = Plus / Minus

                                                                        
Query: 377  agctctgtgtttggcggtgaatctggagtatccaatccatgtaactgctggttccagcca 436
            ||||||| ||||||||||| || ||||||||||| |||||||||||||| || |||| ||
Sbjct: 1341 agctctgcgtttggcggtggatttggagtatccagtccatgtaactgctagtcccagaca 1282

                                                                        
Query: 437  tctggtcctcgacgaggttggacagaagcaagaagccctctcttggctgctcaccttgcc 496
            |||| |||||||| | ||| || |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 1281 tctgatcctcgaccaagttagatagaagcaaaaagccttctcttggctgttcaccctgac 1222

                                                                        
Query: 497  gtacaacacggggcagctggtaacacgaagaatccctctccctcagggctctttgtactg 556
            |||| || |||   |||||||   | |||| |||||||||||| ||||  | | ||| | 
Sbjct: 1221 gtacgacgcggcagagctggtggtaagaaggatccctctcccttagggtccctagtattt 1162

                                                                        
Query: 557  ccatgaagtttctcgagtgattgttgtcacattctctcaactgaatctttgatagatcag 616
             |||||| ||||| ||||  | ||| |||||||||||||| |||| |||||||||||| |
Sbjct: 1161 tcatgaaatttctggagtactcgttatcacattctctcaattgaacctttgatagatcgg 1102

                                                                        
Query: 617  ggaagtttgacaggctgactccaagaatgtcgttcatgagctcaggctggagcattctac 676
            ||||||||| || ||||||||||||||||| |||||  || |||||  ||||||| ||||
Sbjct: 1101 ggaagtttgccaagctgactccaagaatgttgttcacaagttcaggtgggagcatcctac 1042

                          
Query: 677  ctaaccatactagg 690
            ||||||||||||||
Sbjct: 1041 ctaaccatactagg 1028
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>gb|BT016797.1| Zea mays clone Contig630 mRNA sequence
          Length = 1829

 Score =  147 bits (74), Expect = 6e-32
 Identities = 248/306 (81%)
 Strand = Plus / Minus

                                                                        
Query: 385  gtttggcggtgaatctggagtatccaatccatgtaactgctggttccagccatctggtcc 444
            ||||| |||||||| ||  |||||||||| | |||||| || ||||||||||||||||||
Sbjct: 1328 gtttgacggtgaatttgctgtatccaatcaacgtaactacttgttccagccatctggtcc 1269

                                                                        
Query: 445  tcgacgaggttggacagaagcaagaagccctctcttggctgctcaccttgccgtacaaca 504
            || || ||||| || |||||||   |||| ||||||||||| ||||| || || || |||
Sbjct: 1268 tcaacaaggttagatagaagcagatagccttctcttggctgttcaccctgtcgcaccaca 1209

                                                                        
Query: 505  cggggcagctggtaacacgaagaatccctctccctcagggctctttgtactgccatgaag 564
            |||   ||||||| | | |||| |||| |||||| ||||| |||| ||| |  |||||| 
Sbjct: 1208 cggcatagctggtgataggaaggatccttctcccgcagggatcttagtattttcatgaaa 1149

                                                                        
Query: 565  tttctcgagtgattgttgtcacattctctcaactgaatctttgatagatcagggaagttt 624
            ||||| ||    |  |||||||| ||||||||   |||||||||||| ||||||||||||
Sbjct: 1148 tttcttgacaattcattgtcacactctctcaatacaatctttgataggtcagggaagttt 1089

                                                                        
Query: 625  gacaggctgactccaagaatgtcgttcatgagctcaggctggagcattctacctaaccat 684
            | || ||| ||||||||||||| |||||  || |||||| ||||||| ||||||||||| 
Sbjct: 1088 gccaagctcactccaagaatgttgttcacaagttcaggcgggagcatcctacctaaccac 1029

                  
Query: 685  actagg 690
            ||||||
Sbjct: 1028 actagg 1023
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>gb|AY104615.1| Zea mays PCO111783 mRNA sequence
          Length = 2510

 Score =  147 bits (74), Expect = 6e-32
 Identities = 248/306 (81%)
 Strand = Plus / Minus

                                                                        
Query: 385  gtttggcggtgaatctggagtatccaatccatgtaactgctggttccagccatctggtcc 444
            ||||| |||||||| ||  |||||||||| | |||||| || ||||||||||||||||||
Sbjct: 2064 gtttgacggtgaatttgctgtatccaatcaacgtaactacttgttccagccatctggtcc 2005

                                                                        
Query: 445  tcgacgaggttggacagaagcaagaagccctctcttggctgctcaccttgccgtacaaca 504
            || || ||||| || |||||||   |||| ||||||||||| ||||| || || || |||
Sbjct: 2004 tcaacaaggttagatagaagcagatagccttctcttggctgttcaccctgtcgcaccaca 1945

                                                                        
Query: 505  cggggcagctggtaacacgaagaatccctctccctcagggctctttgtactgccatgaag 564
            |||   ||||||| | | |||| |||| |||||| ||||| |||| ||| |  |||||| 
Sbjct: 1944 cggcatagctggtgataggaaggatccttctcccgcagggatcttagtattttcatgaaa 1885

                                                                        
Query: 565  tttctcgagtgattgttgtcacattctctcaactgaatctttgatagatcagggaagttt 624
            ||||| ||    |  |||||||| ||||||||   |||||||||||| ||||||||||||
Sbjct: 1884 tttcttgacaattcattgtcacactctctcaatacaatctttgataggtcagggaagttt 1825

                                                                        
Query: 625  gacaggctgactccaagaatgtcgttcatgagctcaggctggagcattctacctaaccat 684
            | || ||| ||||||||||||| |||||  || |||||| ||||||| ||||||||||| 
Sbjct: 1824 gccaagctcactccaagaatgttgttcacaagttcaggcgggagcatcctacctaaccac 1765

                  
Query: 685  actagg 690
            ||||||
Sbjct: 1764 actagg 1759



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 104  tgcctacttattctgaaacaacagctgt 131
            ||||||||||||| || |||||||||||
Sbjct: 2330 tgcctacttattccgatacaacagctgt 2303
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>emb|AL662964.3|OSJN00161 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H09,
              complete sequence
          Length = 155672

 Score =  113 bits (57), Expect = 8e-22
 Identities = 183/225 (81%)
 Strand = Plus / Minus

                                                                          
Query: 377    agctctgtgtttggcggtgaatctggagtatccaatccatgtaactgctggttccagcca 436
              ||||||| ||||||||||| || ||||||||||| |||||||||||||| || |||| ||
Sbjct: 147165 agctctgcgtttggcggtggatttggagtatccagtccatgtaactgctagtcccagaca 147106

                                                                          
Query: 437    tctggtcctcgacgaggttggacagaagcaagaagccctctcttggctgctcaccttgcc 496
              |||| |||||||| | ||| || |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 147105 tctgatcctcgaccaagttagatagaagcaaaaagccttctcttggctgttcaccctgac 147046

                                                                          
Query: 497    gtacaacacggggcagctggtaacacgaagaatccctctccctcagggctctttgtactg 556
              |||| || |||   |||||||   | |||| |||||||||||| ||||  | | ||| | 
Sbjct: 147045 gtacgacgcggcagagctggtggtaagaaggatccctctcccttagggtccctagtattt 146986

                                                           
Query: 557    ccatgaagtttctcgagtgattgttgtcacattctctcaactgaa 601
               |||||| ||||| ||||  | ||| |||||||||||||| ||||
Sbjct: 146985 tcatgaaatttctggagtactcgttatcacattctctcaattgaa 146941



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                          
Query: 603    ctttgatagatcagggaagtttgacaggctgactccaagaatgtcgttcatgagctcagg 662
              |||||||||||| |||||||||| || ||||||||||||||||| |||||  || |||||
Sbjct: 146727 ctttgatagatcggggaagtttgccaagctgactccaagaatgttgttcacaagttcagg 146668

                                          
Query: 663    ctggagcattctacctaaccatactagg 690
                ||||||| ||||||||||||||||||
Sbjct: 146667 tgggagcatcctacctaaccatactagg 146640
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  113 bits (57), Expect = 8e-22
 Identities = 183/225 (81%)
 Strand = Plus / Minus

                                                                           
Query: 377     agctctgtgtttggcggtgaatctggagtatccaatccatgtaactgctggttccagcca 436
               ||||||| ||||||||||| || ||||||||||| |||||||||||||| || |||| ||
Sbjct: 1851897 agctctgcgtttggcggtggatttggagtatccagtccatgtaactgctagtcccagaca 1851838

                                                                           
Query: 437     tctggtcctcgacgaggttggacagaagcaagaagccctctcttggctgctcaccttgcc 496
               |||| |||||||| | ||| || |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 1851837 tctgatcctcgaccaagttagatagaagcaaaaagccttctcttggctgttcaccctgac 1851778

                                                                           
Query: 497     gtacaacacggggcagctggtaacacgaagaatccctctccctcagggctctttgtactg 556
               |||| || |||   |||||||   | |||| |||||||||||| ||||  | | ||| | 
Sbjct: 1851777 gtacgacgcggcagagctggtggtaagaaggatccctctcccttagggtccctagtattt 1851718

                                                            
Query: 557     ccatgaagtttctcgagtgattgttgtcacattctctcaactgaa 601
                |||||| ||||| ||||  | ||| |||||||||||||| ||||
Sbjct: 1851717 tcatgaaatttctggagtactcgttatcacattctctcaattgaa 1851673



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                           
Query: 603     ctttgatagatcagggaagtttgacaggctgactccaagaatgtcgttcatgagctcagg 662
               |||||||||||| |||||||||| || ||||||||||||||||| |||||  || |||||
Sbjct: 1851459 ctttgatagatcggggaagtttgccaagctgactccaagaatgttgttcacaagttcagg 1851400

                                           
Query: 663     ctggagcattctacctaaccatactagg 690
                 ||||||| ||||||||||||||||||
Sbjct: 1851399 tgggagcatcctacctaaccatactagg 1851372
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>dbj|AK071986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094J05, full
            insert sequence
          Length = 2007

 Score =  101 bits (51), Expect = 3e-18
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                        
Query: 592  ctcaactgaatctttgatagatcagggaagtttgacaggctgactccaagaatgtcgttc 651
            ||||| |||| |||||||||||| |||||||||| || ||||||||||||||||| ||||
Sbjct: 2007 ctcaattgaacctttgatagatcggggaagtttgccaagctgactccaagaatgttgttc 1948

                                                   
Query: 652  atgagctcaggctggagcattctacctaaccatactagg 690
            |  || |||||  ||||||| ||||||||||||||||||
Sbjct: 1947 acaagttcaggtgggagcatcctacctaaccatactagg 1909
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>gb|AC127245.5| Mus musculus BAC clone RP24-422M4 from chromosome 6, complete sequence
          Length = 181475

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 584    cacattctctcaactgaatctttgat 609
              |||||||| |||||||||||||||||
Sbjct: 173797 cacattctgtcaactgaatctttgat 173822
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>gb|AC144459.8| Medicago truncatula clone mth2-23o13, complete sequence
          Length = 114098

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 169   aatatattaacaataaagtttg 190
             ||||||||||||||||||||||
Sbjct: 93512 aatatattaacaataaagtttg 93491
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>gb|AC132394.3| Mus musculus BAC clone RP23-391F16 from chromosome 6, complete sequence
          Length = 197171

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 584   cacattctctcaactgaatctttgat 609
             |||||||| |||||||||||||||||
Sbjct: 32272 cacattctgtcaactgaatctttgat 32297
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 328     gtttacacaaaaacaaaaatt 348
               |||||||||||||||||||||
Sbjct: 2398457 gtttacacaaaaacaaaaatt 2398437
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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 328     gtttacacaaaaacaaaaatt 348
               |||||||||||||||||||||
Sbjct: 2350274 gtttacacaaaaacaaaaatt 2350254
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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 328     gtttacacaaaaacaaaaatt 348
               |||||||||||||||||||||
Sbjct: 2350203 gtttacacaaaaacaaaaatt 2350183
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>gb|AC104686.2| Homo sapiens BAC clone RP11-74M11 from 4, complete sequence
          Length = 149964

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 334   acaaaaacaaaaatttctgga 354
             |||||||||||||||||||||
Sbjct: 39981 acaaaaacaaaaatttctgga 40001
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>gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone mth2-48e18, complete
             sequence
          Length = 146321

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 335   caaaaacaaaaatttctggaa 355
             |||||||||||||||||||||
Sbjct: 24817 caaaaacaaaaatttctggaa 24837
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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 328     gtttacacaaaaacaaaaatt 348
               |||||||||||||||||||||
Sbjct: 2350150 gtttacacaaaaacaaaaatt 2350130
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>emb|AL672290.16| Mouse DNA sequence from clone RP23-471M13 on chromosome X, complete
              sequence
          Length = 178341

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 621    gtttgacaggctgactccaag 641
              |||||||||||||||||||||
Sbjct: 162560 gtttgacaggctgactccaag 162580
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>emb|AL121840.4|CNS01DSR Human chromosome 14 DNA sequence BAC C-2251F13 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 93432

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 173   tattaacaataaagtttgtat 193
             |||||||||||||||||||||
Sbjct: 61915 tattaacaataaagtttgtat 61895
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>emb|AL805971.6| Mouse DNA sequence from clone RP23-143H1 on chromosome X, complete
              sequence
          Length = 107283

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 183    aaagtttgtattgcccgctga 203
              |||||||||||||||||||||
Sbjct: 103457 aaagtttgtattgcccgctga 103437
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>gb|AF024495.2| Caenorhabditis elegans cosmid R02D1, complete sequence
          Length = 5027

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 341  caaaaatttctggaacatcc 360
            ||||||||||||||||||||
Sbjct: 4777 caaaaatttctggaacatcc 4796
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>gb|AC132323.3| Mus musculus BAC clone RP24-268M17 from chromosome 9, complete sequence
          Length = 182469

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    atattaacaataaagtttgt 191
              ||||||||||||||||||||
Sbjct: 176578 atattaacaataaagtttgt 176597
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>gb|AC110564.7| Mus musculus chromosome 12, clone RP23-292A16, complete sequence
          Length = 211576

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   gtttacacaaaaacaaaaat 347
             ||||||||||||||||||||
Sbjct: 95687 gtttacacaaaaacaaaaat 95706
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>emb|CT025837.1| Medicago truncatula chromosome 5 clone mth2-28f11, COMPLETE SEQUENCE
          Length = 99258

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 6     gagtttacacaatctttgcaacta 29
             ||||||||||||| ||||||||||
Sbjct: 95499 gagtttacacaatttttgcaacta 95522
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>gb|AC163654.2| Mus musculus BAC clone RP23-259M14 from chromosome 16, complete
             sequence
          Length = 159273

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 49    tgcatacaaacccctaccaaaaac 72
             ||||||||||| ||||||||||||
Sbjct: 32179 tgcatacaaactcctaccaaaaac 32156
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>gb|AC023736.4| Drosophila melanogaster X BAC RP98-4P5 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 165052

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 334    acaaaaacaaaaatttctgg 353
              ||||||||||||||||||||
Sbjct: 117029 acaaaaacaaaaatttctgg 117048
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>gb|AC108081.2| Homo sapiens chromosome 16 clone CTC-661I16, complete sequence
          Length = 100808

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 437   tctggtcctcgacgaggttg 456
             ||||||||||||||||||||
Sbjct: 23452 tctggtcctcgacgaggttg 23433
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>gb|AC093844.3| Homo sapiens BAC clone RP11-451F20 from 4, complete sequence
          Length = 196044

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   ttacacaaaaacaaaaattt 349
             ||||||||||||||||||||
Sbjct: 58574 ttacacaaaaacaaaaattt 58555
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>gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complete sequence
          Length = 219476

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   tctgaaacaacagctgtgtc 134
             ||||||||||||||||||||
Sbjct: 63759 tctgaaacaacagctgtgtc 63740
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>emb|BX276188.11| Zebrafish DNA sequence from clone CH211-245A19, complete sequence
          Length = 177660

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 169   aatatattaacaataaagtttgta 192
             |||||||| |||||||||||||||
Sbjct: 17735 aatatattcacaataaagtttgta 17712
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>emb|CR391759.1| Gallus gallus finished cDNA, clone ChEST469n6
          Length = 917

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 564 gtttctcgagtgattgttgt 583
           ||||||||||||||||||||
Sbjct: 45  gtttctcgagtgattgttgt 64
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>gb|AF125951.1| Caenorhabditis elegans cosmid D2063, complete sequence
          Length = 18125

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 341  caaaaatttctggaacatcc 360
            ||||||||||||||||||||
Sbjct: 1650 caaaaatttctggaacatcc 1669
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>ref|NM_071793.4| Caenorhabditis elegans Nuclear Hormone Receptor family member
           (nhr-125) (nhr-125) mRNA, complete cds
          Length = 2339

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 341 caaaaatttctggaacatcc 360
           ||||||||||||||||||||
Sbjct: 179 caaaaatttctggaacatcc 160
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>emb|BX119979.9| Zebrafish DNA sequence from clone CH211-201G8 in linkage group 1,
             complete sequence
          Length = 194023

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   tttacacaaaaacaaaaatt 348
             ||||||||||||||||||||
Sbjct: 64816 tttacacaaaaacaaaaatt 64797
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>gb|AC093744.2| Homo sapiens BAC clone RP11-25B14 from 4, complete sequence
          Length = 188914

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    atacaaatgcatacaaaccc 61
             ||||||||||||||||||||
Sbjct: 43849 atacaaatgcatacaaaccc 43868
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>gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromosome unknown, complete
              sequence
          Length = 240555

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 336    aaaaacaaaaatttctggaa 355
              ||||||||||||||||||||
Sbjct: 149380 aaaaacaaaaatttctggaa 149361
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>emb|BX005484.7| Zebrafish DNA sequence from clone DKEY-25G12, complete sequence
          Length = 212049

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 458   acagaagcaagaagccctctcttg 481
             ||||||||||||| ||||||||||
Sbjct: 55877 acagaagcaagaaaccctctcttg 55900
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>emb|AL954695.14| Zebrafish DNA sequence from clone CH211-202N12 in linkage group 1,
             complete sequence
          Length = 207004

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 458   acagaagcaagaagccctctcttg 481
             ||||||||||||| ||||||||||
Sbjct: 91754 acagaagcaagaaaccctctcttg 91777
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>gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, complete sequence
          Length = 211981

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   gcctacttattctgaaacaa 124
             ||||||||||||||||||||
Sbjct: 70811 gcctacttattctgaaacaa 70792
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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 438    ctggtcctcgacgaggttgg 457
              ||||||||||||||||||||
Sbjct: 941296 ctggtcctcgacgaggttgg 941315
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>gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 of 74 of the complete
              sequence
          Length = 299153

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 334    acaaaaacaaaaatttctgg 353
              ||||||||||||||||||||
Sbjct: 273911 acaaaaacaaaaatttctgg 273930
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>emb|AL161670.4|CNS01RHD Human chromosome 14 DNA sequence BAC R-804M7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163923

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   acaaaaacaaaaatttctgg 353
             ||||||||||||||||||||
Sbjct: 71834 acaaaaacaaaaatttctgg 71853
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>emb|BX510915.23| Zebrafish DNA sequence from clone DKEY-24M12 in linkage group 21,
             complete sequence
          Length = 253718

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 458   acagaagcaagaagccctctcttg 481
             ||||||||||||| ||||||||||
Sbjct: 99165 acagaagcaagaaaccctctcttg 99188
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>emb|BX511083.17| Zebrafish DNA sequence from clone CH211-195F22 in linkage group 1,
             complete sequence
          Length = 211668

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   tttacacaaaaacaaaaatt 348
             ||||||||||||||||||||
Sbjct: 79436 tttacacaaaaacaaaaatt 79417
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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 170     atatattaacaataaagttt 189
               ||||||||||||||||||||
Sbjct: 2011992 atatattaacaataaagttt 2011973
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>emb|CR955007.2| Medicago truncatula chromosome 5 clone mte1-58b20, COMPLETE SEQUENCE
          Length = 108616

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 6    gagtttacacaatctttgcaacta 29
            ||||||||||||| ||||||||||
Sbjct: 5195 gagtttacacaatttttgcaacta 5218
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>gb|AC111202.5| Mus musculus BAC clone RP23-338I3 from 9, complete sequence
          Length = 200266

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    atattaacaataaagtttgt 191
              ||||||||||||||||||||
Sbjct: 187047 atattaacaataaagtttgt 187028


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,291,873
Number of Sequences: 3902068
Number of extensions: 7291873
Number of successful extensions: 140478
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140094
Number of HSP's gapped (non-prelim): 374
length of query: 690
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 667
effective length of database: 17,143,297,704
effective search space: 11434579568568
effective search space used: 11434579568568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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