ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39d14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADAM1_RAT (P70505) ADAM 1 precursor (EC 3.4.24.-) (A disintegrin... 28 5.0
2BCDO2_MOUSE (Q99NF1) Beta,beta-carotene 9',10'-dioxygenase (EC 1... 28 8.6

>ADAM1_RAT (P70505) ADAM 1 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 1) (Fertilin alpha subunit)
          Length = 789

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = +3

Query: 6   PXHGLPMHHSVDLLVLYIERAGVSE-SDDHWCC---DRSSACLTNRPW-KP*GTRDGSCT 170
           P H   MH ++       + +G S  S DH+     D   ACL +RPW +    RD  C 
Sbjct: 392 PKHLCLMHETIS------KTSGFSNCSSDHFLRFLHDHRGACLLDRPWHQSHKRRDAHCG 445

Query: 171 SATMSXSGDC 200
           +  +  S +C
Sbjct: 446 NGVVEESEEC 455



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>BCDO2_MOUSE (Q99NF1) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)|
           (Beta-carotene dioxygenase 2) (B-diox-II)
          Length = 532

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 178 VAEVQLPSRVPYGFHGLFV 122
           +   ++P ++PYGFHG FV
Sbjct: 512 LGRAEVPVQMPYGFHGTFV 530


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,118,315
Number of Sequences: 219361
Number of extensions: 367957
Number of successful extensions: 1091
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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