ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal39d14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY838897.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 1 (NCED1) mRNA, complete cds Length = 2119 Score = 125 bits (63), Expect = 6e-26 Identities = 98/110 (89%) Strand = Plus / Minus Query: 88 atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 147 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 2018 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1959 Query: 148 ggacgcgggatggaagctgcacctcggcgacgatgtccangtcgggcgac 197 ||||||| || ||||||||||| |||||||| |||| ||| |||||| Sbjct: 1958 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgac 1909
>ref|XM_506928.1| PREDICTED Oryza sativa (japonica cultivar-group), P0724B10.24 mRNA Length = 2079 Score = 125 bits (63), Expect = 6e-26 Identities = 98/110 (89%) Strand = Plus / Minus Query: 88 atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 147 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 1936 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1877 Query: 148 ggacgcgggatggaagctgcacctcggcgacgatgtccangtcgggcgac 197 ||||||| || ||||||||||| |||||||| |||| ||| |||||| Sbjct: 1876 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgac 1827
>ref|XM_467354.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2079 Score = 125 bits (63), Expect = 6e-26 Identities = 98/110 (89%) Strand = Plus / Minus Query: 88 atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 147 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 1936 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1877 Query: 148 ggacgcgggatggaagctgcacctcggcgacgatgtccangtcgggcgac 197 ||||||| || ||||||||||| |||||||| |||| ||| |||||| Sbjct: 1876 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgac 1827
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 125 bits (63), Expect = 6e-26 Identities = 98/110 (89%) Strand = Plus / Plus Query: 88 atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 147 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 29044735 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 29044794 Query: 148 ggacgcgggatggaagctgcacctcggcgacgatgtccangtcgggcgac 197 ||||||| || ||||||||||| |||||||| |||| ||| |||||| Sbjct: 29044795 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgac 29044844
>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0724B10 Length = 169143 Score = 125 bits (63), Expect = 6e-26 Identities = 98/110 (89%) Strand = Plus / Plus Query: 88 atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 147 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 90900 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 90959 Query: 148 ggacgcgggatggaagctgcacctcggcgacgatgtccangtcgggcgac 197 ||||||| || ||||||||||| |||||||| |||| ||| |||||| Sbjct: 90960 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgac 91009
>dbj|AK099580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040C20, full insert sequence Length = 2080 Score = 125 bits (63), Expect = 6e-26 Identities = 98/110 (89%) Strand = Plus / Minus Query: 88 atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 147 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 1936 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1877 Query: 148 ggacgcgggatggaagctgcacctcggcgacgatgtccangtcgggcgac 197 ||||||| || ||||||||||| |||||||| |||| ||| |||||| Sbjct: 1876 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgac 1827
>dbj|AK064824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F03, full insert sequence Length = 2080 Score = 125 bits (63), Expect = 6e-26 Identities = 98/110 (89%) Strand = Plus / Minus Query: 88 atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 147 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 1936 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1877 Query: 148 ggacgcgggatggaagctgcacctcggcgacgatgtccangtcgggcgac 197 ||||||| || ||||||||||| |||||||| |||| ||| |||||| Sbjct: 1876 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgac 1827
>gb|AY838901.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 5 (NCED5) mRNA, complete cds Length = 2041 Score = 48.1 bits (24), Expect = 0.011 Identities = 24/24 (100%) Strand = Plus / Minus Query: 131 gccgtggaagccgtaggggacgcg 154 |||||||||||||||||||||||| Sbjct: 1901 gccgtggaagccgtaggggacgcg 1878
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.011 Identities = 24/24 (100%) Strand = Plus / Minus Query: 131 gccgtggaagccgtaggggacgcg 154 |||||||||||||||||||||||| Sbjct: 26303686 gccgtggaagccgtaggggacgcg 26303663
>dbj|AK107649.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-F10, full insert sequence Length = 1475 Score = 48.1 bits (24), Expect = 0.011 Identities = 24/24 (100%) Strand = Plus / Minus Query: 131 gccgtggaagccgtaggggacgcg 154 |||||||||||||||||||||||| Sbjct: 813 gccgtggaagccgtaggggacgcg 790
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.011 Identities = 24/24 (100%) Strand = Plus / Minus Query: 131 gccgtggaagccgtaggggacgcg 154 |||||||||||||||||||||||| Sbjct: 26231862 gccgtggaagccgtaggggacgcg 26231839
>emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb0016A10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133978 Score = 48.1 bits (24), Expect = 0.011 Identities = 24/24 (100%) Strand = Plus / Minus Query: 131 gccgtggaagccgtaggggacgcg 154 |||||||||||||||||||||||| Sbjct: 67670 gccgtggaagccgtaggggacgcg 67647
>emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb0101I10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131689 Score = 48.1 bits (24), Expect = 0.011 Identities = 24/24 (100%) Strand = Plus / Minus Query: 131 gccgtggaagccgtaggggacgcg 154 |||||||||||||||||||||||| Sbjct: 17965 gccgtggaagccgtaggggacgcg 17942
>gb|AY838899.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 3 (NCED3) mRNA, complete cds Length = 2060 Score = 46.1 bits (23), Expect = 0.042 Identities = 35/39 (89%) Strand = Plus / Minus Query: 131 gccgtggaagccgtaggggacgcgggatggaagctgcac 169 ||||||||||||||| || |||||||| || |||||||| Sbjct: 1958 gccgtggaagccgtacggcacgcgggacggcagctgcac 1920
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183327 Score = 46.1 bits (23), Expect = 0.042 Identities = 35/39 (89%) Strand = Plus / Minus Query: 131 gccgtggaagccgtaggggacgcgggatggaagctgcac 169 ||||||||||||||| || |||||||| || |||||||| Sbjct: 144759 gccgtggaagccgtacggcacgcgggacggcagctgcac 144721
>gb|DQ145930.1| Hordeum vulgare subsp. vulgare 9-cis-epoxycarotenoid dioxygenase 1 mRNA, complete cds Length = 2376 Score = 46.1 bits (23), Expect = 0.042 Identities = 35/39 (89%) Strand = Plus / Minus Query: 131 gccgtggaagccgtaggggacgcgggatggaagctgcac 169 |||||||||||| |||||||| ||||| || |||||||| Sbjct: 1773 gccgtggaagccataggggacccgggacggcagctgcac 1735
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.042 Identities = 35/39 (89%) Strand = Plus / Minus Query: 131 gccgtggaagccgtaggggacgcgggatggaagctgcac 169 ||||||||||||||| || |||||||| || |||||||| Sbjct: 24766070 gccgtggaagccgtacggcacgcgggacggcagctgcac 24766032
>emb|BX842649.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 4/11 Length = 349697 Score = 44.1 bits (22), Expect = 0.16 Identities = 25/26 (96%) Strand = Plus / Plus Query: 59 agaacgtgctggtgtatctgaatctg 84 |||||||||||||||||||| ||||| Sbjct: 280488 agaacgtgctggtgtatctgtatctg 280513
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 gcctgacgaacaggccgtgg 137 |||||||||||||||||||| Sbjct: 2409487 gcctgacgaacaggccgtgg 2409468 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acaggccgtggaagccgtag 146 |||||||||||||||||||| Sbjct: 1066435 acaggccgtggaagccgtag 1066454
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acaggccgtggaagccgtag 146 |||||||||||||||||||| Sbjct: 2736990 acaggccgtggaagccgtag 2737009
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 gctgcacctcggcgacgatgtcca 186 |||||||||||||||| ||||||| Sbjct: 3236706 gctgcacctcggcgaccatgtcca 3236683
>gb|U95953.1|ZMU95953 Zea mays viviparous-14 (vp14) mRNA, complete cds Length = 2498 Score = 40.1 bits (20), Expect = 2.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 131 gccgtggaagccgtaggggacgcgggatggaagctg 166 ||||||||||||| |||| |||||||| || ||||| Sbjct: 1872 gccgtggaagccgaagggcacgcgggacggcagctg 1837 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,108,108 Number of Sequences: 3902068 Number of extensions: 1108108 Number of successful extensions: 81213 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80777 Number of HSP's gapped (non-prelim): 429 length of query: 204 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 182 effective length of database: 17,147,199,772 effective search space: 3120790358504 effective search space used: 3120790358504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
