ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38o12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein 955 0.0
2ref|XM_215932.3| PREDICTED: Rattus norvegicus matrilin 4 (predic... 42 1.7
3gb|AC017026.8| Homo sapiens BAC clone RP11-269L4 from 2, complet... 40 6.9
4dbj|AK183923.1| Mus musculus cDNA, clone:Y0G0127O07, strand:plus... 40 6.9
5gb|U91319.1|HSU91319 Human chromosome 16p13.11 BAC clone CIT987S... 40 6.9

>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein
          Length = 1334

 Score =  955 bits (482), Expect = 0.0
 Identities = 502/509 (98%), Gaps = 1/509 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    catgaatacaanagtttcccgacaggggcggggggtattattttaggagtgcacactagg 60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1290 catgaatacaatagtttcccgacaggggcggggggtattattttaggagtgcacactagg 1231

                                                                        
Query: 61   cacttacatactcacgacagtagtagctagcactaagagcagaagatagcatagcaaaga 120
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1230 cacttacatactcacgacagtagtagctamcactaagagcagaagatagcatagcaaaga 1171

                                                                        
Query: 121  tcatagtagtagcatgatcangtttaaagttcagggtaattgtgcttaactagacgagcg 180
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 tcatagtagtagcatgatca-gtttaaagttcagggtaattgtgcttaactagacgagcg 1112

                                                                        
Query: 181  agttcgagaccatgaggcataggcgccacacggcaaactgtaagcccgtctgttatcttc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 agttcgagaccatgaggcataggcgccacacggcaaactgtaagcccgtctgttatcttc 1052

                                                                        
Query: 241  accttgctagttccactgctgaaaatcaagtcaagcagcgcacctgcagctatcccaatg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 accttgctagttccactgctgaaaatcaagtcaagcagcgcacctgcagctatcccaatg 992

                                                                        
Query: 301  agcgcaccaattccaaaaccgacgactcctccaattaccgtgacagccgcanaagcaatt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 991  agcgcaccaattccaaaaccgacgactcctccaattaccgtgacagccgcagaagcaatt 932

                                                                        
Query: 361  tcnatgtctagtgctacgaatccagcttctacagcagtagtaactatttctcccacctca 420
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931  tcgatgtctagtgctacgaatccagcttctacagcagtagtaactatttctcccacctca 872

                                                                        
Query: 421  aggttaactactgcagttaacgcatttactgaatccctaaccgctgnctccagcttatct 480
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 871  aggttaactactgcagttaacgcatttactgaatccctaaccgctgcctccagcttatct 812

                                         
Query: 481  tntgctgtgtatatgtcccacaccattgc 509
            | |||||||||||||||||||||||||||
Sbjct: 811  tctgctgtgtatatgtcccacaccattgc 783



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>ref|XM_215932.3| PREDICTED: Rattus norvegicus matrilin 4 (predicted)
           (Matn4_predicted), mRNA
          Length = 2236

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 179 cgagttcgagaccatgaggca 199
           |||||||||||||||||||||
Sbjct: 253 cgagttcgagaccatgaggca 273



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>gb|AC017026.8| Homo sapiens BAC clone RP11-269L4 from 2, complete sequence
          Length = 37049

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 426   aactactgcagttaacgcatttac 449
             ||||||||||||||| ||||||||
Sbjct: 27724 aactactgcagttaatgcatttac 27747



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>dbj|AK183923.1| Mus musculus cDNA, clone:Y0G0127O07, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000069456, based on BLAT search
          Length = 225

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 383 cagcttctacagcagtagta 402
           ||||||||||||||||||||
Sbjct: 177 cagcttctacagcagtagta 196



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>gb|U91319.1|HSU91319 Human chromosome 16p13.11 BAC clone CIT987SK-98H8 complete sequence
          Length = 125630

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    actgctgaaaatcaagtcaa 274
              ||||||||||||||||||||
Sbjct: 106508 actgctgaaaatcaagtcaa 106489


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,409,984
Number of Sequences: 3902068
Number of extensions: 3409984
Number of successful extensions: 54529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54522
Number of HSP's gapped (non-prelim): 6
length of query: 509
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 487
effective length of database: 17,147,199,772
effective search space: 8350686288964
effective search space used: 8350686288964
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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