| Clone Name | rbaal38o12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein Length = 1334 Score = 955 bits (482), Expect = 0.0 Identities = 502/509 (98%), Gaps = 1/509 (0%) Strand = Plus / Minus Query: 1 catgaatacaanagtttcccgacaggggcggggggtattattttaggagtgcacactagg 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1290 catgaatacaatagtttcccgacaggggcggggggtattattttaggagtgcacactagg 1231 Query: 61 cacttacatactcacgacagtagtagctagcactaagagcagaagatagcatagcaaaga 120 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1230 cacttacatactcacgacagtagtagctamcactaagagcagaagatagcatagcaaaga 1171 Query: 121 tcatagtagtagcatgatcangtttaaagttcagggtaattgtgcttaactagacgagcg 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1170 tcatagtagtagcatgatca-gtttaaagttcagggtaattgtgcttaactagacgagcg 1112 Query: 181 agttcgagaccatgaggcataggcgccacacggcaaactgtaagcccgtctgttatcttc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1111 agttcgagaccatgaggcataggcgccacacggcaaactgtaagcccgtctgttatcttc 1052 Query: 241 accttgctagttccactgctgaaaatcaagtcaagcagcgcacctgcagctatcccaatg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1051 accttgctagttccactgctgaaaatcaagtcaagcagcgcacctgcagctatcccaatg 992 Query: 301 agcgcaccaattccaaaaccgacgactcctccaattaccgtgacagccgcanaagcaatt 360 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 991 agcgcaccaattccaaaaccgacgactcctccaattaccgtgacagccgcagaagcaatt 932 Query: 361 tcnatgtctagtgctacgaatccagcttctacagcagtagtaactatttctcccacctca 420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 931 tcgatgtctagtgctacgaatccagcttctacagcagtagtaactatttctcccacctca 872 Query: 421 aggttaactactgcagttaacgcatttactgaatccctaaccgctgnctccagcttatct 480 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 871 aggttaactactgcagttaacgcatttactgaatccctaaccgctgcctccagcttatct 812 Query: 481 tntgctgtgtatatgtcccacaccattgc 509 | ||||||||||||||||||||||||||| Sbjct: 811 tctgctgtgtatatgtcccacaccattgc 783
>ref|XM_215932.3| PREDICTED: Rattus norvegicus matrilin 4 (predicted) (Matn4_predicted), mRNA Length = 2236 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 179 cgagttcgagaccatgaggca 199 ||||||||||||||||||||| Sbjct: 253 cgagttcgagaccatgaggca 273
>gb|AC017026.8| Homo sapiens BAC clone RP11-269L4 from 2, complete sequence Length = 37049 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 426 aactactgcagttaacgcatttac 449 ||||||||||||||| |||||||| Sbjct: 27724 aactactgcagttaatgcatttac 27747
>dbj|AK183923.1| Mus musculus cDNA, clone:Y0G0127O07, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000069456, based on BLAT search Length = 225 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 cagcttctacagcagtagta 402 |||||||||||||||||||| Sbjct: 177 cagcttctacagcagtagta 196
>gb|U91319.1|HSU91319 Human chromosome 16p13.11 BAC clone CIT987SK-98H8 complete sequence Length = 125630 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 actgctgaaaatcaagtcaa 274 |||||||||||||||||||| Sbjct: 106508 actgctgaaaatcaagtcaa 106489 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,409,984 Number of Sequences: 3902068 Number of extensions: 3409984 Number of successful extensions: 54529 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54522 Number of HSP's gapped (non-prelim): 6 length of query: 509 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 487 effective length of database: 17,147,199,772 effective search space: 8350686288964 effective search space used: 8350686288964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)