ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38o09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
2dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
3dbj|AK099720.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 4e-45
4ref|XM_476319.1| Oryza sativa (japonica cultivar-group), predic... 101 3e-18
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
6dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
7dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
8dbj|AK065602.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
9emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 44 0.52
10emb|CR450782.5| Zebrafish DNA sequence from clone CH211-245B21 i... 42 2.1
11emb|Z47816.1|SC9827 S.cerevisiae chromosome XIII cosmid 9827 42 2.1
12gb|AC146691.5| Macaca mulatta clone ch250-214a10, complete sequence 42 2.1
13dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
14gb|AC097495.3| Homo sapiens BAC clone RP11-304A15 from 2, comple... 42 2.1
15gb|AC155998.2| Xenopus tropicalis clone ISB1-313L20, complete se... 42 2.1
16gb|AC152930.2| Xenopus tropicalis clone ISB1-158G10, complete se... 42 2.1
17dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
18dbj|AK070996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
19dbj|AK068472.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
20gb|CP000007.1| Gluconobacter oxydans 621H plasmid pGOX4, complet... 42 2.1
21gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
22emb|AL772416.6|CNS08C9U Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.1
23emb|AL954179.9| Zebrafish DNA sequence from clone DKEY-33I12, co... 42 2.1
24emb|AL732328.12| Mouse DNA sequence from clone RP23-106P4 on chr... 42 2.1
25gb|AC119240.11| Mus musculus chromosome 3, clone RP24-228K15, co... 40 8.1
26gb|AC163683.4| Mus musculus BAC clone RP23-8L20 from chromosome ... 40 8.1
27gb|AC146095.3| Pan troglodytes BAC clone RP43-48M24 from 7, comp... 40 8.1
28gb|AC145988.3| Pan troglodytes BAC clone RP43-166E1 from 7, comp... 40 8.1
29emb|CR955006.2| Medicago truncatula chromosome 5 clone mth2-5i4,... 40 8.1
30gb|AC023248.20| Mus musculus chromosome 7, clone RP23-124B2, com... 40 8.1
31emb|AL390294.19| Human DNA sequence from clone RP11-379F12 on ch... 40 8.1
32emb|AL354857.13| Human DNA sequence from clone RP11-346N8 on chr... 40 8.1
33emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 8.1
34emb|AL731595.1|OSJN00238 Oryza sativa genomic DNA, chromosome 4,... 40 8.1
35dbj|AP001295.1| Mus musculus genomic DNA, chromosome 7, clone:B9... 40 8.1
36gb|AC100757.2| Homo sapiens chromosome 15, clone RP11-566K19, co... 40 8.1
37gb|AC091220.3| Drosophila melanogaster 3L BAC RP98-7E7 (Roswell ... 40 8.1
38gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete seq... 40 8.1
39gb|AC024934.38| Homo sapiens 12 BAC RP11-329A19 (Roswell Park Ca... 40 8.1
40emb|BX511180.7| Zebrafish DNA sequence from clone CH211-221H1 in... 40 8.1
41gb|AC155949.8| Mus musculus 6 BAC RP24-407P20 (Roswell Park Canc... 40 8.1
42dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
43emb|AL731622.1|OSJN00265 Oryza sativa genomic DNA, chromosome 4,... 40 8.1
44gb|AC007341.10| Homo sapiens chromosome 16 clone RP11-381L15, co... 40 8.1
45gb|AC007333.8| Homo sapiens chromosome 16 clone RP11-142G1, comp... 40 8.1
46emb|CT485797.2| Medicago truncatula chromosome 5 clone mth4-11a3... 40 8.1
47gb|AE003550.4| Drosophila melanogaster chromosome 3L, section 35... 40 8.1
48emb|AL840638.9| Zebrafish DNA sequence from clone DKEY-224J12, c... 40 8.1
49emb|AL928959.9| Mouse DNA sequence from clone RP23-73I19 on chro... 40 8.1
50emb|AL121612.5|CNS01DS1 Human chromosome 14 DNA sequence BAC R-1... 40 8.1
51emb|AL837521.6| Mouse DNA sequence from clone RP23-28I8 on chrom... 40 8.1
52emb|AJ271885.2|MMU271885 Mus musculus partial Kcnq1 gene for pot... 40 8.1
53emb|AL691427.15| Mouse DNA sequence from clone RP23-317I15 on ch... 40 8.1
54emb|AL732463.7| Mouse DNA sequence from clone RP23-216N18 on chr... 40 8.1 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  190 bits (96), Expect = 4e-45
 Identities = 185/215 (86%)
 Strand = Plus / Minus

                                                                            
Query: 360      atcactggccttccaggagcaccctgaggctatggagcccctcggccgagatgctccgct 419
                |||| |||||||||||||||||||||||||| || ||||| || ||||| ||||||||||
Sbjct: 34048414 atcattggccttccaggagcaccctgaggctgtgaagcccttcagccgatatgctccgct 34048355

                                                                            
Query: 420      ccaccctgcccatcctgctcaccctgatctggggaggggcctcctggtggaaggcgacca 479
                | ||||| ||| ||||| |||| |||| ||| |||||||||||||||||||| | |||||
Sbjct: 34048354 cgaccctccccgtcctgttcactctgagctgaggaggggcctcctggtggaatgagacca 34048295

                                                                            
Query: 480      tcaccgccgtcaggttgtcggtggcgccccgcctgatcgcctnctccacgatctccttgc 539
                |||||||||| |||||||| | ||| || ||||| || |||| ||| ||||||| |||||
Sbjct: 34048294 tcaccgccgttaggttgtctgaggcccctcgccttattgcctcctcgacgatctgcttgc 34048235

                                                   
Query: 540      agcaccgcctcaggtcgttgtgctcctggagcctc 574
                |||||  ||||| ||| |||||||| |||||||||
Sbjct: 34048234 agcacaacctcaagtcattgtgctcttggagcctc 34048200



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                          
Query: 57       catctcataatgagcctcaaagccccctggatgcacgctact 98
                |||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 34048704 catcgcataatgagcctcaaagccccctggatgcacactact 34048663



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 177      caggttcgttggttttattc 196
                ||||||||||||||||||||
Sbjct: 34048594 caggttcgttggttttattc 34048575
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>dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1695_D07
          Length = 110585

 Score =  190 bits (96), Expect = 4e-45
 Identities = 185/215 (86%)
 Strand = Plus / Minus

                                                                         
Query: 360   atcactggccttccaggagcaccctgaggctatggagcccctcggccgagatgctccgct 419
             |||| |||||||||||||||||||||||||| || ||||| || ||||| ||||||||||
Sbjct: 75689 atcattggccttccaggagcaccctgaggctgtgaagcccttcagccgatatgctccgct 75630

                                                                         
Query: 420   ccaccctgcccatcctgctcaccctgatctggggaggggcctcctggtggaaggcgacca 479
             | ||||| ||| ||||| |||| |||| ||| |||||||||||||||||||| | |||||
Sbjct: 75629 cgaccctccccgtcctgttcactctgagctgaggaggggcctcctggtggaatgagacca 75570

                                                                         
Query: 480   tcaccgccgtcaggttgtcggtggcgccccgcctgatcgcctnctccacgatctccttgc 539
             |||||||||| |||||||| | ||| || ||||| || |||| ||| ||||||| |||||
Sbjct: 75569 tcaccgccgttaggttgtctgaggcccctcgccttattgcctcctcgacgatctgcttgc 75510

                                                
Query: 540   agcaccgcctcaggtcgttgtgctcctggagcctc 574
             |||||  ||||| ||| |||||||| |||||||||
Sbjct: 75509 agcacaacctcaagtcattgtgctcttggagcctc 75475



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                       
Query: 57    catctcataatgagcctcaaagccccctggatgcacgctact 98
             |||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 75979 catcgcataatgagcctcaaagccccctggatgcacactact 75938



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   caggttcgttggttttattc 196
             ||||||||||||||||||||
Sbjct: 75869 caggttcgttggttttattc 75850
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>dbj|AK099720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088F12, full
            insert sequence
          Length = 1660

 Score =  190 bits (96), Expect = 4e-45
 Identities = 185/215 (86%)
 Strand = Plus / Minus

                                                                        
Query: 360  atcactggccttccaggagcaccctgaggctatggagcccctcggccgagatgctccgct 419
            |||| |||||||||||||||||||||||||| || ||||| || ||||| ||||||||||
Sbjct: 1299 atcattggccttccaggagcaccctgaggctgtgaagcccttcagccgatatgctccgct 1240

                                                                        
Query: 420  ccaccctgcccatcctgctcaccctgatctggggaggggcctcctggtggaaggcgacca 479
            | ||||| ||| ||||| |||| |||| ||| |||||||||||||||||||| | |||||
Sbjct: 1239 cgaccctccccgtcctgttcactctgagctgaggaggggcctcctggtggaatgagacca 1180

                                                                        
Query: 480  tcaccgccgtcaggttgtcggtggcgccccgcctgatcgcctnctccacgatctccttgc 539
            |||||||||| |||||||| | ||| || ||||| || |||| ||| ||||||| |||||
Sbjct: 1179 tcaccgccgttaggttgtctgaggcccctcgccttattgcctcctcgacgatctgcttgc 1120

                                               
Query: 540  agcaccgcctcaggtcgttgtgctcctggagcctc 574
            |||||  ||||| ||| |||||||| |||||||||
Sbjct: 1119 agcacaacctcaagtcattgtgctcttggagcctc 1085



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 57   catctcataatgagcctcaaagccccctggatgcacgctact 98
            |||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 1589 catcgcataatgagcctcaaagccccctggatgcacactact 1548



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 177  caggttcgttggttttattc 196
            ||||||||||||||||||||
Sbjct: 1479 caggttcgttggttttattc 1460
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>ref|XM_476319.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1167

 Score =  101 bits (51), Expect = 3e-18
 Identities = 161/198 (81%)
 Strand = Plus / Minus

                                                                        
Query: 395  agcccctcggccgagatgctccgctccaccctgcccatcctgctcaccctgatctgggga 454
            |||||||| ||||| ||||| ||| ||||||| ||    | |||||| |||| |||||||
Sbjct: 1133 agcccctcagccgaaatgctgcgcgccaccctaccgggtcggctcactctgacctgggga 1074

                                                                        
Query: 455  ggggcctcctggtggaaggcgaccatcaccgccgtcaggttgtcggtggcgccccgcctg 514
            || |||||| ||||||||| ||||| |||||| || | ||||||||||||||| ||| | 
Sbjct: 1073 ggagcctccaggtggaaggagaccaacaccgcggttaagttgtcggtggcgcctcgcttt 1014

                                                                        
Query: 515  atcgcctnctccacgatctccttgcagcaccgcctcaggtcgttgtgctcctggagcctc 574
            || |||| ||| ||||||||| |||||||   | |||  |||||||| || ||||| | |
Sbjct: 1013 attgcctcctcaacgatctccctgcagcaggacttcacatcgttgtgttcttggaggcgc 954

                              
Query: 575  cgccgtgcaaagtccacc 592
            | ||||||||||||||||
Sbjct: 953  ctccgtgcaaagtccacc 936
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  101 bits (51), Expect = 3e-18
 Identities = 161/198 (81%)
 Strand = Plus / Plus

                                                                           
Query: 395     agcccctcggccgagatgctccgctccaccctgcccatcctgctcaccctgatctgggga 454
               |||||||| ||||| ||||| ||| ||||||| ||    | |||||| |||| |||||||
Sbjct: 3959156 agcccctcagccgaaatgctgcgcgccaccctaccgggtcggctcactctgacctgggga 3959215

                                                                           
Query: 455     ggggcctcctggtggaaggcgaccatcaccgccgtcaggttgtcggtggcgccccgcctg 514
               || |||||| ||||||||| ||||| |||||| || | ||||||||||||||| ||| | 
Sbjct: 3959216 ggagcctccaggtggaaggagaccaacaccgcggttaagttgtcggtggcgcctcgcttt 3959275

                                                                           
Query: 515     atcgcctnctccacgatctccttgcagcaccgcctcaggtcgttgtgctcctggagcctc 574
               || |||| ||| ||||||||| |||||||   | |||  |||||||| || ||||| | |
Sbjct: 3959276 attgcctcctcaacgatctccctgcagcaggacttcacatcgttgtgttcttggaggcgc 3959335

                                 
Query: 575     cgccgtgcaaagtccacc 592
               | ||||||||||||||||
Sbjct: 3959336 ctccgtgcaaagtccacc 3959353



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 557      ttgtgctcctggagcctccgccgtgcaaagtccaccg 593
                ||||||||||||||| | || ||||||||||| ||||
Sbjct: 23126009 ttgtgctcctggagctttcggcgtgcaaagtctaccg 23125973
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>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBb0019L07
          Length = 131650

 Score =  101 bits (51), Expect = 3e-18
 Identities = 161/198 (81%)
 Strand = Plus / Plus

                                                                        
Query: 395  agcccctcggccgagatgctccgctccaccctgcccatcctgctcaccctgatctgggga 454
            |||||||| ||||| ||||| ||| ||||||| ||    | |||||| |||| |||||||
Sbjct: 2811 agcccctcagccgaaatgctgcgcgccaccctaccgggtcggctcactctgacctgggga 2870

                                                                        
Query: 455  ggggcctcctggtggaaggcgaccatcaccgccgtcaggttgtcggtggcgccccgcctg 514
            || |||||| ||||||||| ||||| |||||| || | ||||||||||||||| ||| | 
Sbjct: 2871 ggagcctccaggtggaaggagaccaacaccgcggttaagttgtcggtggcgcctcgcttt 2930

                                                                        
Query: 515  atcgcctnctccacgatctccttgcagcaccgcctcaggtcgttgtgctcctggagcctc 574
            || |||| ||| ||||||||| |||||||   | |||  |||||||| || ||||| | |
Sbjct: 2931 attgcctcctcaacgatctccctgcagcaggacttcacatcgttgtgttcttggaggcgc 2990

                              
Query: 575  cgccgtgcaaagtccacc 592
            | ||||||||||||||||
Sbjct: 2991 ctccgtgcaaagtccacc 3008
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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score =  101 bits (51), Expect = 3e-18
 Identities = 161/198 (81%)
 Strand = Plus / Plus

                                                                         
Query: 395   agcccctcggccgagatgctccgctccaccctgcccatcctgctcaccctgatctgggga 454
             |||||||| ||||| ||||| ||| ||||||| ||    | |||||| |||| |||||||
Sbjct: 65032 agcccctcagccgaaatgctgcgcgccaccctaccgggtcggctcactctgacctgggga 65091

                                                                         
Query: 455   ggggcctcctggtggaaggcgaccatcaccgccgtcaggttgtcggtggcgccccgcctg 514
             || |||||| ||||||||| ||||| |||||| || | ||||||||||||||| ||| | 
Sbjct: 65092 ggagcctccaggtggaaggagaccaacaccgcggttaagttgtcggtggcgcctcgcttt 65151

                                                                         
Query: 515   atcgcctnctccacgatctccttgcagcaccgcctcaggtcgttgtgctcctggagcctc 574
             || |||| ||| ||||||||| |||||||   | |||  |||||||| || ||||| | |
Sbjct: 65152 attgcctcctcaacgatctccctgcagcaggacttcacatcgttgtgttcttggaggcgc 65211

                               
Query: 575   cgccgtgcaaagtccacc 592
             | ||||||||||||||||
Sbjct: 65212 ctccgtgcaaagtccacc 65229
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>dbj|AK065602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026O16, full
            insert sequence
          Length = 1713

 Score =  101 bits (51), Expect = 3e-18
 Identities = 161/198 (81%)
 Strand = Plus / Minus

                                                                        
Query: 395  agcccctcggccgagatgctccgctccaccctgcccatcctgctcaccctgatctgggga 454
            |||||||| ||||| ||||| ||| ||||||| ||    | |||||| |||| |||||||
Sbjct: 1299 agcccctcagccgaaatgctgcgcgccaccctaccgggtcggctcactctgacctgggga 1240

                                                                        
Query: 455  ggggcctcctggtggaaggcgaccatcaccgccgtcaggttgtcggtggcgccccgcctg 514
            || |||||| ||||||||| ||||| |||||| || | ||||||||||||||| ||| | 
Sbjct: 1239 ggagcctccaggtggaaggagaccaacaccgcggttaagttgtcggtggcgcctcgcttt 1180

                                                                        
Query: 515  atcgcctnctccacgatctccttgcagcaccgcctcaggtcgttgtgctcctggagcctc 574
            || |||| ||| ||||||||| |||||||   | |||  |||||||| || ||||| | |
Sbjct: 1179 attgcctcctcaacgatctccctgcagcaggacttcacatcgttgtgttcttggaggcgc 1120

                              
Query: 575  cgccgtgcaaagtccacc 592
            | ||||||||||||||||
Sbjct: 1119 ctccgtgcaaagtccacc 1102
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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1753957

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 47      catctcatctcatctcataatg 68
               ||||||||||||||||||||||
Sbjct: 1553303 catctcatctcatctcataatg 1553324
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>emb|CR450782.5| Zebrafish DNA sequence from clone CH211-245B21 in linkage group 3,
             complete sequence
          Length = 99702

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 554   tcgttgtgctcctggagcctc 574
             |||||||||||||||||||||
Sbjct: 11527 tcgttgtgctcctggagcctc 11547
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>emb|Z47816.1|SC9827 S.cerevisiae chromosome XIII cosmid 9827
          Length = 20668

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 44    aaacatctcatctcatctcat 64
             |||||||||||||||||||||
Sbjct: 20020 aaacatctcatctcatctcat 20000
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>gb|AC146691.5| Macaca mulatta clone ch250-214a10, complete sequence
          Length = 152056

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 26    agaaacaggggggaagaaaaa 46
             |||||||||||||||||||||
Sbjct: 54813 agaaacaggggggaagaaaaa 54793
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 463     ctggtggaaggcgaccatcac 483
               |||||||||||||||||||||
Sbjct: 8268189 ctggtggaaggcgaccatcac 8268209
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>gb|AC097495.3| Homo sapiens BAC clone RP11-304A15 from 2, complete sequence
          Length = 163994

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     cttttacagacaaatagaaac 31
              |||||||||||||||||||||
Sbjct: 139126 cttttacagacaaatagaaac 139106
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>gb|AC155998.2| Xenopus tropicalis clone ISB1-313L20, complete sequence
          Length = 86223

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 5     ttgtttcttttacagacaaat 25
             |||||||||||||||||||||
Sbjct: 15529 ttgtttcttttacagacaaat 15549
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>gb|AC152930.2| Xenopus tropicalis clone ISB1-158G10, complete sequence
          Length = 95175

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     ttgtttcttttacagacaaat 25
             |||||||||||||||||||||
Sbjct: 34857 ttgtttcttttacagacaaat 34837
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>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0417D05
          Length = 165752

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 557   ttgtgctcctggagcctccgccgtgcaaagtccaccg 593
             ||||||||||||||| | || ||||||||||| ||||
Sbjct: 76657 ttgtgctcctggagctttcggcgtgcaaagtctaccg 76621
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>dbj|AK070996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080K08, full
            insert sequence
          Length = 1521

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 557  ttgtgctcctggagcctccgccgtgcaaagtccaccg 593
            ||||||||||||||| | || ||||||||||| ||||
Sbjct: 1035 ttgtgctcctggagctttcggcgtgcaaagtctaccg 999
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>dbj|AK068472.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155M07, full
            insert sequence
          Length = 1770

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 557  ttgtgctcctggagcctccgccgtgcaaagtccaccg 593
            ||||||||||||||| | || ||||||||||| ||||
Sbjct: 1284 ttgtgctcctggagctttcggcgtgcaaagtctaccg 1248
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>gb|CP000007.1| Gluconobacter oxydans 621H plasmid pGOX4, complete sequence
          Length = 13223

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 241  gatggatgatgaacggacgga 261
            |||||||||||||||||||||
Sbjct: 6240 gatggatgatgaacggacgga 6260
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 463     ctggtggaaggcgaccatcac 483
               |||||||||||||||||||||
Sbjct: 8268070 ctggtggaaggcgaccatcac 8268090
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>emb|AL772416.6|CNS08C9U Oryza sativa chromosome 12, . BAC OSJNBa0095H15 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 142670

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 463   ctggtggaaggcgaccatcac 483
             |||||||||||||||||||||
Sbjct: 74706 ctggtggaaggcgaccatcac 74686
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>emb|AL954179.9| Zebrafish DNA sequence from clone DKEY-33I12, complete sequence
          Length = 194366

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 47     catctcatctcatctcataat 67
              |||||||||||||||||||||
Sbjct: 126796 catctcatctcatctcataat 126776
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>emb|AL732328.12| Mouse DNA sequence from clone RP23-106P4 on chromosome 2, complete
              sequence
          Length = 177649

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 419    tccaccctgcccatcctgctc 439
              |||||||||||||||||||||
Sbjct: 174896 tccaccctgcccatcctgctc 174876
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>gb|AC119240.11| Mus musculus chromosome 3, clone RP24-228K15, complete sequence
          Length = 161819

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     catctcatctcatctcataa 66
              ||||||||||||||||||||
Sbjct: 146714 catctcatctcatctcataa 146695
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>gb|AC163683.4| Mus musculus BAC clone RP23-8L20 from chromosome 6, complete sequence
          Length = 218138

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   ctgcccatcctgctcaccct 444
             ||||||||||||||||||||
Sbjct: 79722 ctgcccatcctgctcaccct 79741
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>gb|AC146095.3| Pan troglodytes BAC clone RP43-48M24 from 7, complete sequence
          Length = 190243

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   aacatctcatctcatctcat 64
            ||||||||||||||||||||
Sbjct: 7834 aacatctcatctcatctcat 7815
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>gb|AC145988.3| Pan troglodytes BAC clone RP43-166E1 from 7, complete sequence
          Length = 162223

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    aacatctcatctcatctcat 64
             ||||||||||||||||||||
Sbjct: 48486 aacatctcatctcatctcat 48505
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>emb|CR955006.2| Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE
          Length = 108871

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    catctcatctcatctcataa 66
             ||||||||||||||||||||
Sbjct: 55530 catctcatctcatctcataa 55549
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>gb|AC023248.20| Mus musculus chromosome 7, clone RP23-124B2, complete sequence
          Length = 211123

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 38     gaagaaaaacatctcatctcatct 61
              ||||||| ||||||||||||||||
Sbjct: 138731 gaagaaatacatctcatctcatct 138708
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>emb|AL390294.19| Human DNA sequence from clone RP11-379F12 on chromosome 10 Contains the
             3' end of the TAF3 gene for TAF3 RNA polymerase II, TATA
             box binding protein (TBP)-associated factor, 140kDa
             (TAF140,TAFII140), the GATA3 gene for GATA binding protein
             3 (HDR,MGC5445), two novel genes and 3 CpG islands,
             complete sequence
          Length = 151559

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   cttccaggagcaccctgagg 388
             ||||||||||||||||||||
Sbjct: 43620 cttccaggagcaccctgagg 43639
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>emb|AL354857.13| Human DNA sequence from clone RP11-346N8 on chromosome 6 Contains the 3'
              end of the EPHA7 gene for ephrin receptor A7, complete
              sequence
          Length = 199223

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     ttttacagacaaatagaaac 31
              ||||||||||||||||||||
Sbjct: 172041 ttttacagacaaatagaaac 172060
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>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1320834

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 41     gaaaaacatctcatctcatctcat 64
              |||||| |||||||||||||||||
Sbjct: 874063 gaaaaaaatctcatctcatctcat 874040



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     aacatctcatctcatctcat 64
              ||||||||||||||||||||
Sbjct: 708762 aacatctcatctcatctcat 708743
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>emb|AL731595.1|OSJN00238 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041M21,
             complete sequence
          Length = 151218

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    aacatctcatctcatctcat 64
             ||||||||||||||||||||
Sbjct: 68002 aacatctcatctcatctcat 67983



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    aacatctcatctcatctcat 64
             ||||||||||||||||||||
Sbjct: 67968 aacatctcatctcatctcat 67949
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>dbj|AP001295.1| Mus musculus genomic DNA, chromosome 7, clone:B96, complete sequence
          Length = 191373

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 38    gaagaaaaacatctcatctcatct 61
             ||||||| ||||||||||||||||
Sbjct: 11568 gaagaaatacatctcatctcatct 11545
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>gb|AC100757.2| Homo sapiens chromosome 15, clone RP11-566K19, complete sequence
          Length = 171987

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   ggggaggggcctcctggtgg 469
             ||||||||||||||||||||
Sbjct: 17794 ggggaggggcctcctggtgg 17813
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>gb|AC091220.3| Drosophila melanogaster 3L BAC RP98-7E7 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179838

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     acatctcatctcatctcata 65
              ||||||||||||||||||||
Sbjct: 128762 acatctcatctcatctcata 128743
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>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence
          Length = 117931

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     acatctcatctcatctcata 65
              ||||||||||||||||||||
Sbjct: 110528 acatctcatctcatctcata 110547
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>gb|AC024934.38| Homo sapiens 12 BAC RP11-329A19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 204819

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     aacatctcatctcatctcat 64
              ||||||||||||||||||||
Sbjct: 169078 aacatctcatctcatctcat 169059
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>emb|BX511180.7| Zebrafish DNA sequence from clone CH211-221H1 in linkage group 3,
             complete sequence
          Length = 155448

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   gatgaacggacggacaaaca 267
             ||||||||||||||||||||
Sbjct: 10400 gatgaacggacggacaaaca 10381
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>gb|AC155949.8| Mus musculus 6 BAC RP24-407P20 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 179931

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    catctcatctcatctcataa 66
             ||||||||||||||||||||
Sbjct: 40617 catctcatctcatctcataa 40598
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 45       aacatctcatctcatctcat 64
                ||||||||||||||||||||
Sbjct: 13074189 aacatctcatctcatctcat 13074170



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 45       aacatctcatctcatctcat 64
                ||||||||||||||||||||
Sbjct: 13074155 aacatctcatctcatctcat 13074136
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>emb|AL731622.1|OSJN00265 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093P23,
            complete sequence
          Length = 165683

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   aacatctcatctcatctcat 64
            ||||||||||||||||||||
Sbjct: 6399 aacatctcatctcatctcat 6380



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   aacatctcatctcatctcat 64
            ||||||||||||||||||||
Sbjct: 6365 aacatctcatctcatctcat 6346
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>gb|AC007341.10| Homo sapiens chromosome 16 clone RP11-381L15, complete sequence
          Length = 168612

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   ttggttttattcctcccagg 204
             ||||||||||||||||||||
Sbjct: 70695 ttggttttattcctcccagg 70714
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>gb|AC007333.8| Homo sapiens chromosome 16 clone RP11-142G1, complete sequence
          Length = 180837

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   ttggttttattcctcccagg 204
             ||||||||||||||||||||
Sbjct: 22551 ttggttttattcctcccagg 22532
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>emb|CT485797.2| Medicago truncatula chromosome 5 clone mth4-11a3, COMPLETE SEQUENCE
          Length = 211224

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     catctcatctcatctcataa 66
              ||||||||||||||||||||
Sbjct: 101530 catctcatctcatctcataa 101511
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>gb|AE003550.4| Drosophila melanogaster chromosome 3L, section 35 of 83 of the complete
             sequence
          Length = 304975

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    acatctcatctcatctcata 65
             ||||||||||||||||||||
Sbjct: 27544 acatctcatctcatctcata 27525
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>emb|AL840638.9| Zebrafish DNA sequence from clone DKEY-224J12, complete sequence
          Length = 177617

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     catctcatctcatctcataa 66
              ||||||||||||||||||||
Sbjct: 100665 catctcatctcatctcataa 100646
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>emb|AL928959.9| Mouse DNA sequence from clone RP23-73I19 on chromosome 2, complete
              sequence
          Length = 143937

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     ggggaagaaaaacatctcat 54
              ||||||||||||||||||||
Sbjct: 120869 ggggaagaaaaacatctcat 120888
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>emb|AL121612.5|CNS01DS1 Human chromosome 14 DNA sequence BAC R-179A9 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 180914

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     aacatctcatctcatctcat 64
              ||||||||||||||||||||
Sbjct: 100979 aacatctcatctcatctcat 100998
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>emb|AL837521.6| Mouse DNA sequence from clone RP23-28I8 on chromosome 4, complete
             sequence
          Length = 230493

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    aacatctcatctcatctcat 64
             ||||||||||||||||||||
Sbjct: 97097 aacatctcatctcatctcat 97116
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>emb|AJ271885.2|MMU271885 Mus musculus partial Kcnq1 gene for potassium channel protein and
             associated 187740 bp genomic fragment
          Length = 187740

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 38    gaagaaaaacatctcatctcatct 61
             ||||||| ||||||||||||||||
Sbjct: 50127 gaagaaatacatctcatctcatct 50104
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>emb|AL691427.15| Mouse DNA sequence from clone RP23-317I15 on chromosome 3, complete
              sequence
          Length = 213090

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     catctcatctcatctcataa 66
              ||||||||||||||||||||
Sbjct: 180492 catctcatctcatctcataa 180511
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>emb|AL732463.7| Mouse DNA sequence from clone RP23-216N18 on chromosome X, complete
             sequence
          Length = 158239

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 13    tttacagacaaatagaaacagggg 36
             |||||| |||||||||||||||||
Sbjct: 20535 tttacacacaaatagaaacagggg 20512


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,061,199
Number of Sequences: 3902068
Number of extensions: 5061199
Number of successful extensions: 108305
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107729
Number of HSP's gapped (non-prelim): 571
length of query: 598
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 575
effective length of database: 17,143,297,704
effective search space: 9857396179800
effective search space used: 9857396179800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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