ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXOC2_ARATH (Q8S3U9) Exocyst complex component 2 (Exocyst comple... 72 1e-12
2HXA9B_BRARE (Q9YGT5) Homeobox protein Hox-A9b 33 0.44
3PTPRZ_RAT (Q62656) Receptor-type tyrosine-protein phosphatase ze... 31 2.2

>EXOC2_ARATH (Q8S3U9) Exocyst complex component 2 (Exocyst complex component Sec5)|
          Length = 1090

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 38/54 (70%), Positives = 43/54 (79%)
 Frame = -2

Query: 573  RQPTRGSEDAASDDKQVSSVSPDDLLALAQQHGSDLLQGELERTRLNIACFMES 412
            R+PTRGSED  SDDKQ  SVS DDLLAL +Q  ++LLQ ELERTR+N ACF ES
Sbjct: 994  RRPTRGSEDTVSDDKQ--SVSADDLLALTKQCSNELLQQELERTRVNTACFAES 1045



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>HXA9B_BRARE (Q9YGT5) Homeobox protein Hox-A9b|
          Length = 258

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -3

Query: 365 HQHQQHIIPRLKSPPLVLEGSRQVQILP*SLEDADELTAESNIF 234
           H++  H+ PR  S P+V + SR++ +L  S ++     A+S+IF
Sbjct: 17  HENDDHLAPRFSSGPVVQQQSRELTLLEYSEQEPYTFQAKSSIF 60



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>PTPRZ_RAT (Q62656) Receptor-type tyrosine-protein phosphatase zeta precursor|
           (EC 3.1.3.48) (R-PTP-zeta) (Phosphacan) (3F8 chondroitin
           sulfate proteoglycan) (3H1 keratan sulfate proteoglycan)
          Length = 2316

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
 Frame = -2

Query: 573 RQPTRGSEDAASDD----------KQVSSVSPDDLLALAQQHGSDLLQGELERTRLNIAC 424
           R PTRGSE +   D          +QV+  +P+  ++L  Q G++L    +E T      
Sbjct: 481 RSPTRGSEFSGKSDVLNTSLNPTSQQVAEFNPEREMSLPSQIGTNLPPHSVEGT------ 534

Query: 423 FMESTLQSGSKT 388
              ++L SGSKT
Sbjct: 535 --SASLNSGSKT 544


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,830,008
Number of Sequences: 219361
Number of extensions: 1325951
Number of successful extensions: 3354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3352
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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