>emb|AJ242873.1|HVU242873 Hordeum vulgare mRNA for vacuolar H+-ATPase subunit C
          Length = 1487

 Score =  892 bits (450), Expect = 0.0
 Identities = 475/480 (98%), Gaps = 5/480 (1%)
 Strand = Plus / Minus

                                                                        
Query: 9    ccctgattttattattatggaacctggttactcaaa-ttacaataatgtacccagtaata 67
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1449 ccctgattttattattatggaacctggttactcaaaattacaataatgtacccagtaata 1390

                                                                        
Query: 68   caacactgcacaaaaagtaaacagttgcaacaccgtagcagaacaagaaaagataagtcc 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1389 caacactgcacaaaaagtaaacagttgcaacaccgtagcagaacaagaaaagataagtcc 1330

                                                                        
Query: 128  cactttgtgccaggatacgttcgaggttctccgaaacactatattattgatcggcgcgga 187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 cactttgtgccaggatacgttcgaggttctccgaaacactatattattgatcggcgcgga 1270

                                                                        
Query: 188  tcatctactacagaagtatgaaccgaaaccgacataccatgaaagaattggtgtcacaaa 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1269 tcatctactacagaagtatgaaccgaaaccgacataccatgaaagaattggtgtcacaaa 1210

                                                                        
Query: 248  ataatatacatcaaacaccctcagacaaagtttatggtgaaggacacgtatgggtgggac 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 ataatatacatcaaacaccctcagacaaagtttatggtgaaggacacgtatgggtgggac 1150

                                                                        
Query: 308  tctgtctcgcctcccaggccagcagccatacccacgtcgtcttcagatctccagtagctg 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 1149 tctgtctcgcctcccaggccagcagccatacccacgtcgtcttcagatctccagta---g 1093

                                                                        
Query: 368  ctgttggtattgccgcatagcccttccaagatgttccttacttttttctcgctctttgta 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 ctgttggtattgccgcatagcccttccaagatgttccttacttttttctcgctctttgta 1033

                                                                        
Query: 428  gatggtgctaggacaacagacaggaaccgtgcaggcaga-ccatatctcagaatactctc 486
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1032 gatggtgctaggacaacagacaggaaccgtgcaggcagacccatatctcagaatactctc 973

>gb|BT019108.1| Zea mays clone Contig713.F mRNA sequence
          Length = 984

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                       
Query: 395 aagatgttccttacttttttctcgctctttgtagatggtgctaggacaacagacaggaac 454
           |||||| |||||||||| ||||||||||||||||||||||| || ||| |||||||||| 
Sbjct: 471 aagatgctccttactttcttctcgctctttgtagatggtgcaagaacagcagacaggaat 530

                                           
Query: 455 cgtgcaggcagaccatatctcagaatactctc 486
             ||  |||||||||||||| ||||| |||||
Sbjct: 531 gatggcggcagaccatatctaagaatgctctc 562



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                       
Query: 267 ctcagacaaagtttatggtgaaggacacgtatgggtgggactctgtctcgcctcccaggc 326
           |||||||||| |||||||||||||||||||| ||||| | ||| || ||||||||||| |
Sbjct: 346 ctcagacaaaatttatggtgaaggacacgtaagggtgcgcctcggtttcgcctcccagac 405

                
Query: 327 cagca 331
           |||||
Sbjct: 406 cagca 410

>gb|AY103694.1| Zea mays PCO086635 mRNA sequence
          Length = 1710

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                        
Query: 395  aagatgttccttacttttttctcgctctttgtagatggtgctaggacaacagacaggaac 454
            |||||| |||||||||| ||||||||||||||||||||||| || ||| |||||||||| 
Sbjct: 1192 aagatgctccttactttcttctcgctctttgtagatggtgcaagaacagcagacaggaat 1133

                                            
Query: 455  cgtgcaggcagaccatatctcagaatactctc 486
              ||  |||||||||||||| ||||| |||||
Sbjct: 1132 gatggcggcagaccatatctaagaatgctctc 1101



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                        
Query: 267  ctcagacaaagtttatggtgaaggacacgtatgggtgggactctgtctcgcctcccaggc 326
            |||||||||| |||||||||||||| ||||| ||||| | ||| || ||||||||||| |
Sbjct: 1317 ctcagacaaaatttatggtgaaggagacgtaagggtgcgcctcggtttcgcctcccagac 1258

                 
Query: 327  cagca 331
            |||||
Sbjct: 1257 cagca 1253

>gb|AY107133.1| Zea mays PCO086632 mRNA sequence
          Length = 817

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                       
Query: 395 aagatgttccttacttttttctcgctctttgtagatggtgctaggacaacagacaggaac 454
           |||||| |||| ||||| ||||||| ||||||||| || || || ||  |||||||||||
Sbjct: 224 aagatgctcctcactttcttctcgccctttgtagacggagcaagaacggcagacaggaac 165

                                           
Query: 455 cgtgcaggcagaccatatctcagaatactctc 486
             ||  |||||||| ||||| ||||| |||||
Sbjct: 164 gatggtggcagaccgtatctaagaatgctctc 133



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 267 ctcagacaaagtttatggtgaaggacacgtatgggtgggactctgtctcgcctcccaggc 326
           |||| ||||||||||||||||| || ||||| || |||  |||||  || |||||||| |
Sbjct: 349 ctcaaacaaagtttatggtgaatgagacgtaaggatggacctctgattcacctcccagac 290

                
Query: 327 cagca 331
           |||||
Sbjct: 289 cagca 285

>emb|BX255917.3| Zebrafish DNA sequence from clone DKEY-1H6 in linkage group 20
            Contains a novel gene, two transposase genes, a gene for
            a novel zinc finger protein and a gene for a novel
            protein similar to vertebrate MTHFD1, complete sequence
          Length = 218068

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 392  tccaagatgttccttacttttt 413
            ||||||||||||||||||||||
Sbjct: 2651 tccaagatgttccttacttttt 2672

>emb|BX004863.7| Zebrafish DNA sequence from clone DKEY-183N2 in linkage group 7,
            complete sequence
          Length = 44979

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 70   acactgcacaaaaagtaaaca 90
            |||||||||||||||||||||
Sbjct: 2924 acactgcacaaaaagtaaaca 2904

>ref|XM_466331.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 924

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 456 gtgcaggcagaccatatctc 475
           ||||||||||||||||||||
Sbjct: 816 gtgcaggcagaccatatctc 797

>ref|XM_450883.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2141

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 111 caagaaaagataagtcccac 130
           ||||||||||||||||||||
Sbjct: 998 caagaaaagataagtcccac 979

>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 391     ttccaagatgttccttactttttt 414
               ||||||||||||| ||||||||||
Sbjct: 1353506 ttccaagatgttcattactttttt 1353529

>emb|CR705232.2|CNS0G73W Tetraodon nigroviridis full-length cDNA
          Length = 689

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 aaaataatatacatcaaaca 264
           ||||||||||||||||||||
Sbjct: 599 aaaataatatacatcaaaca 618

>emb|Z83853.2|HSB109E1 Human DNA sequence from clone SC22CB-109E1 on chromosome 22q12.3,
             complete sequence
          Length = 20027

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 5     attnccctgattttattattatg 27
             ||| |||||||||||||||||||
Sbjct: 12243 attaccctgattttattattatg 12221

>emb|BX323068.15| Zebrafish DNA sequence from clone DKEYP-25A6 in linkage group 24,
              complete sequence
          Length = 156749

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     taatacaacactgcacaaaa 82
              ||||||||||||||||||||
Sbjct: 112954 taatacaacactgcacaaaa 112973

>gb|AC146348.42| Pan troglodytes clone rp43-34i24, complete sequence
          Length = 165558

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 5      attnccctgattttattattatg 27
              ||| |||||||||||||||||||
Sbjct: 101733 attaccctgattttattattatg 101755

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 111      caagaaaagataagtcccac 130
                ||||||||||||||||||||
Sbjct: 13507811 caagaaaagataagtcccac 13507792

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 456      gtgcaggcagaccatatctc 475
                ||||||||||||||||||||
Sbjct: 21733273 gtgcaggcagaccatatctc 21733254

>gb|AY225945.1| Neurospora dodgei strain FGSC 1692 microsatellite TMI sequence
          Length = 455

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 gctgctgttggtattgccgc 383
           ||||||||||||||||||||
Sbjct: 379 gctgctgttggtattgccgc 360

>gb|AY225943.1| Neurospora galapagosensis strain FGSC 1739 microsatellite TMI
           sequence
          Length = 470

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 gctgctgttggtattgccgc 383
           ||||||||||||||||||||
Sbjct: 379 gctgctgttggtattgccgc 360

>gb|AY225944.1| Neurospora africana strain FGSC 1740 microsatellite TMI sequence
          Length = 461

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 gctgctgttggtattgccgc 383
           ||||||||||||||||||||
Sbjct: 379 gctgctgttggtattgccgc 360

>gb|AC084879.23| Homo sapiens 12q BAC RP11-167N24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155589

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     caaaaagtaaacagttgcaa 97
              ||||||||||||||||||||
Sbjct: 152305 caaaaagtaaacagttgcaa 152324

>dbj|AP006562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1175F05
          Length = 126842

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   caagaaaagataagtcccac 130
             ||||||||||||||||||||
Sbjct: 82739 caagaaaagataagtcccac 82720

>dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0025F02
          Length = 156545

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 456    gtgcaggcagaccatatctc 475
              ||||||||||||||||||||
Sbjct: 114670 gtgcaggcagaccatatctc 114651

>dbj|AP005835.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0008E01
          Length = 156856

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   gtgcaggcagaccatatctc 475
             ||||||||||||||||||||
Sbjct: 25672 gtgcaggcagaccatatctc 25653

>emb|BX072529.5| Zebrafish DNA sequence from clone DKEY-20D17 in linkage group 7,
             complete sequence
          Length = 223845

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 390   cttccaagatgttccttacttttt 413
             |||||||||||||||||| |||||
Sbjct: 56665 cttccaagatgttccttatttttt 56688

>emb|BX005164.9| Mouse DNA sequence from clone RP23-257P3 on chromosome X, complete
              sequence
          Length = 168756

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 388    cccttccaagatgttcctta 407
              ||||||||||||||||||||
Sbjct: 138637 cccttccaagatgttcctta 138656

>dbj|AK100117.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007E18, full
           insert sequence
          Length = 2141

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 111 caagaaaagataagtcccac 130
           ||||||||||||||||||||
Sbjct: 998 caagaaaagataagtcccac 979

>emb|CR788243.8| Zebrafish DNA sequence from clone DKEY-194O9 in linkage group 7,
             complete sequence
          Length = 113842

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 390   cttccaagatgttccttacttttt 413
             |||||||||||||||||| |||||
Sbjct: 56877 cttccaagatgttccttatttttt 56900

>gb|AC133953.3| Mus musculus BAC clone RP23-144D4 from chromosome 3, complete sequence
          Length = 196827

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   aagatgttccttactttttt 414
             ||||||||||||||||||||
Sbjct: 59310 aagatgttccttactttttt 59329

>gb|AC134772.2| Homo sapiens chromosome 3 clone RP13-794C1, complete sequence
          Length = 177231

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     acaataatgtacccagtaat 66
              ||||||||||||||||||||
Sbjct: 129463 acaataatgtacccagtaat 129482


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,243,077
Number of Sequences: 3902068
Number of extensions: 5243077
Number of successful extensions: 94214
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94097
Number of HSP's gapped (non-prelim): 112
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)