ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal39c22 |
|---|---|
| Clone Library Name | barley_pub |
>CREA_GIBFU (O94131) DNA-binding protein creA (Carbon catabolite repressor)| Length = 420 Score = 32.0 bits (71), Expect = 0.42 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 52 LTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPRS 192 LTAPP H++ NH H P G +H++ L RSH ++ S Sbjct: 215 LTAPPHHSN-NHRHHPYFGHGMHSSRGHLPTLSSYHMGRSHSNEDPS 260
>OPA_DROME (P39768) Pair-rule protein odd-paired| Length = 609 Score = 31.6 bits (70), Expect = 0.55 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = +1 Query: 49 PLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEH 153 PL PP H HH H H+ AASA + H Sbjct: 522 PLGPPPSHHHHPHHHQAAPSPGAAAASASMLHHNH 556
>ASR_ECOLI (P36560) Acid shock protein precursor| Length = 102 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Frame = +1 Query: 46 TPLTAPPEHTHHNHTHKPGRGQTVHAA-------SARLRQAEHTAEARSHYSKPRSTMRP 204 T AP + THH HK Q AA A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 205 S 207 + Sbjct: 94 A 94
>ASR_ECOL6 (Q8CW15) Acid shock protein precursor| Length = 102 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Frame = +1 Query: 46 TPLTAPPEHTHHNHTHKPGRGQTVHA-------ASARLRQAEHTAEARSHYSKPRSTMRP 204 T AP + THH HK Q A A A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNAKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 205 S 207 + Sbjct: 94 A 94
>ASR_ECO57 (Q8X783) Acid shock protein precursor| Length = 102 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Frame = +1 Query: 46 TPLTAPPEHTHHNHTHKPGRGQTVHAA-------SARLRQAEHTAEARSHYSKPRSTMRP 204 T AP + THH HK Q AA A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 205 S 207 + Sbjct: 94 A 94
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 29.6 bits (65), Expect = 2.1 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Frame = +1 Query: 70 HTHHNHTHKPGR--GQTVHAASARLRQAEHTAEAR 168 H HH+H H PGR G+ SAR R+ A R Sbjct: 2219 HHHHHHHHHPGRGPGRVSPGVSARRRRRGPVARVR 2253
>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor| Length = 4010 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%) Frame = -1 Query: 186 GFGIMRASLCCVLCLSQARTC-----CVDCLPP 103 G G +A C+ C Q TC C CLPP Sbjct: 454 GLGFYQAGSLCLACQPQCSTCTNGLECSSCLPP 486
>MTP1_ARATH (Q9ZT63) Metal tolerance protein 1 (AtMTP1) (Zinc transporter| ZAT-1) (ZAT1p) [Contains: Metal tolerance protein 1 short form] Length = 398 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Frame = +1 Query: 31 HHNTCTPLTAPPEHTHHNHT--HKPGRGQTVHAA 126 HHN +T H HH+H H G G+ H A Sbjct: 198 HHNHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHA 231
>HYCG_ECOLI (P16433) Formate hydrogenlyase subunit 7 (FHL subunit 7)| (Hydrogenase-3 component G) Length = 255 Score = 28.9 bits (63), Expect = 3.6 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -2 Query: 158 AVCSACRKRALAAWTVCPLPGLCV*LW-CVCSGGAVKGVHVLW 33 AV A R AL AW P P +C+ C SGG ++ +W Sbjct: 87 AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor| Length = 4007 Score = 28.5 bits (62), Expect = 4.7 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 5/39 (12%) Frame = -1 Query: 204 WAHGRSGFGIMRASLCCVLCLSQARTC-----CVDCLPP 103 W G G +A C+ C Q TC C C PP Sbjct: 449 WCVHSCGLGFYQAGSLCLACQPQCSTCTSGLECSSCQPP 487
>VE1_BPV1 (P03116) Replication protein E1| Length = 605 Score = 28.5 bits (62), Expect = 4.7 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +3 Query: 36 QHMHTLDCTTRT-HTPQSHTQARQGADSPRSKCALATGRAHSRGSLALFQTQ 188 Q H DC T H ++ TQA +++C LATG + L F Q Sbjct: 354 QAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQ 405
>VE1_BPV2 (P11298) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 604 Score = 28.5 bits (62), Expect = 4.7 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +3 Query: 36 QHMHTLDCTTRT-HTPQSHTQARQGADSPRSKCALATGRAHSRGSLALFQTQ 188 Q H DC T H ++ TQA +++C LATG + L F Q Sbjct: 353 QAKHVKDCATMVRHYLRAETQALSMPAYIKTRCKLATGEGSWKSILTFFNYQ 404
>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)| Length = 387 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = +1 Query: 31 HHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTA 159 HHN+ P H HH+H H P Q A+A + E A Sbjct: 38 HHNS-----HHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = +1 Query: 31 HHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTA 159 HHN+ P H HH+H H P Q A+A + E A Sbjct: 38 HHNS-----HHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>SI1L2_MOUSE (Q80TE4) Signal-induced proliferation-associated 1-like protein 2| Length = 1722 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = +3 Query: 84 SHTQARQGADSPRSKCALATGRAHSRGSLALFQTQIDHAPKLQTRPYY 227 SH+ Q + SP + C+ +TG S + AP T+PY+ Sbjct: 1341 SHSSGSQHSGSPSAHCSKSTGSLDSSKGYIVTHGGGQQAPGAVTKPYH 1388
>DLX2_MOUSE (P40764) Homeobox protein DLX-2 (Homeobox protein TES-1)| Length = 332 Score = 27.7 bits (60), Expect = 7.9 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = +1 Query: 49 PLTAPPEHTHHNHTHKPGRGQTVHAAS 129 P P H HH+H H G G V A + Sbjct: 304 PSQTPQAHHHHHHHHHAGGGAPVSAGT 330
>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)| Length = 657 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Frame = +1 Query: 31 HHNTCTPLTAPPE-HTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPR 189 HH P AP + H HH+H + VH QA H H+ P+ Sbjct: 72 HHQHQAPHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHHHHLHPQ 125
>GSH2_HUMAN (Q9BZM3) Homeobox protein GSH-2| Length = 304 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Frame = +1 Query: 61 PPEHTHHNH-THKPGRGQTVHAASARLRQAEHTAEARSH 174 PP+H HH+H +PG AA+A A + H Sbjct: 131 PPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHH 169
>TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 972 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/49 (26%), Positives = 21/49 (42%) Frame = +1 Query: 70 HTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPRSTMRPSYRR 216 H HH+H H + H +S++ + + E +S S S S R Sbjct: 32 HGHHHHHHSSSSSSSKHKSSSKDKHRDREREHKSSNSSSSSKEHKSSSR 80
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 70 HTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSH 174 H HH+H H GQ HAA+A++ E E S+ Sbjct: 181 HHHHHHGHHHHHGQP-HAAAAKVNPMEVEEELDSY 214 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,538,151 Number of Sequences: 219361 Number of extensions: 697426 Number of successful extensions: 2934 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2610 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2853 length of database: 80,573,946 effective HSP length: 67 effective length of database: 65,876,759 effective search space used: 1581042216 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
