ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38n15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precur... 220 9e-55
2emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical pr... 218 3e-54
3gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisp... 216 1e-53
4emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosp... 216 1e-53
5emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precur... 198 3e-48
6gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate c... 135 4e-29
7emb|AL607043.12| Human DNA sequence from clone RP11-309P22 on ch... 42 0.45
8emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chro... 42 0.45
9emb|AL161790.23| Human DNA sequence from clone RP11-558L8 on chr... 42 0.45
10gb|AC138395.8| Mus musculus chromosome 3, clone RP24-128I24, com... 40 1.8
11gb|AC102856.5| Mus musculus chromosome 8, clone RP24-500H8, comp... 40 1.8
12gb|AC112739.5| Rattus norvegicus 7 BAC CH230-108A12 (Children's ... 40 1.8
13gb|AC122913.4| Mus musculus BAC clone RP23-25J21 from 3, complet... 40 1.8
14emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on ch... 40 1.8
15gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, com... 40 1.8
16emb|X92945.2|EFCAT501 Enterococcus faecalis plasmid pRE25 DNA 40 1.8
17emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chrom... 40 1.8
18gb|AF516335.1| Enterococcus faecium plasmid pUW786 multiple anti... 40 1.8
19ref|NM_001002110.1| Danio rerio zgc:86839 (zgc:86839), mRNA 40 1.8
20gb|AC063968.5| Genomic sequence for Mus musculus, clone RP23-105... 40 1.8
21emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 i... 40 1.8
22gb|BC071486.1| Danio rerio zgc:86839, mRNA (cDNA clone MGC:86839... 40 1.8
23gb|AC091827.2| Homo sapiens chromosome 5 clone CTD-2006A19, comp... 40 1.8
24gb|AF299292.1|AF299292 Staphylococcus intermedius erythromycin r... 40 1.8
25gb|AF408195.1|AF408195 Enterococcus faecalis plasmid pEF418, par... 40 1.8
26gb|U73025.1|SAU73025 Staphylococcus aureus transposon Tn5405 unk... 40 1.8
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
28gb|AC151901.3| Mus musculus BAC clone RP23-271E15 from chromosom... 40 1.8
29gb|AF507977.1| Enterococcus faecium plasmid pRUM, complete sequence 40 1.8
30gb|CP000028.1| Staphylococcus epidermidis RP62A plasmid pSERP, c... 40 1.8
31dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
32dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
33emb|BX908751.8| Zebrafish DNA sequence from clone DKEY-223N17 in... 40 1.8
34gb|AC129022.5| Mus musculus BAC clone RP23-318P2 from chromosome... 38 7.0
35gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 38 7.0
36gb|AY694150.1| Dicentrarchus labrax clone DLA0233E microsatellit... 38 7.0
37gb|AC132284.5| Mus musculus BAC clone RP24-351O18 from chromosom... 38 7.0
38gb|AC144825.2| Danio rerio clone CH211-178A5, complete sequence 38 7.0
39ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 p... 38 7.0
40gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome... 38 7.0
41gb|AC118240.8| Mus musculus chromosome 16, clone RP23-186J5, com... 38 7.0
42gb|AC146760.13| Medicago truncatula clone mth2-174d3, complete s... 38 7.0
43gb|BC113869.1| Homo sapiens MAP/microtubule affinity-regulating ... 38 7.0
44gb|BC114478.1| Homo sapiens MAP/microtubule affinity-regulating ... 38 7.0
45gb|AC157275.2| Mus musculus BAC clone RP24-164M6 from chromosome... 38 7.0
46gb|AC124864.3| Homo sapiens BAC clone RP11-570J4 from 4, complet... 38 7.0
47gb|AC079073.7| Homo sapiens chromosome 11, clone RP11-72A10, com... 38 7.0
48ref|NM_018650.2| Homo sapiens MAP/microtubule affinity-regulatin... 38 7.0
49dbj|AK027493.1| Homo sapiens cDNA FLJ14587 fis, clone NT2RM40017... 38 7.0
50gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, comp... 38 7.0
51gb|AC015743.9| Homo sapiens chromosome 8, clone RP11-1G11, compl... 38 7.0
52gb|AC005341.13| Homo sapiens chromosome , clone RP11-146P2, comp... 38 7.0
53gb|AC090614.5| Homo sapiens chromosome 17, clone RP11-577I13, co... 38 7.0
54gb|AC000067.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 100h... 38 7.0
55ref|XM_624249.1| PREDICTED: Apis mellifera similar to CG3848-PC,... 38 7.0
56gb|AC009507.3| Homo sapiens BAC clone RP11-543L11 from 2, comple... 38 7.0
57gb|AC158237.2| Mus musculus BAC clone RP23-142I8 from chromosome... 38 7.0
58gb|AC068831.17| Homo sapiens chromosome 15, clone RP11-2O19, com... 38 7.0
59gb|AF154845.1|AF154845 Homo sapiens MARK (MARK) mRNA, complete cds 38 7.0
60emb|BX005041.11| Zebrafish DNA sequence from clone DKEY-38L12 in... 38 7.0
61emb|BX465868.6| Zebrafish DNA sequence from clone DKEY-42I9 in l... 38 7.0
62gb|BC084273.1| Xenopus laevis hypothetical LOC495100, mRNA (cDNA... 38 7.0
63gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome 38 7.0
64emb|AJ274968.1|SHE274968 Sida hermaphrodita internal transcribed... 38 7.0
65gb|AY656839.1| Leishmania donovani chagasi genomic sequence 38 7.0
66emb|BX323846.2| Pig DNA sequence from clone XX-43B6, complete se... 38 7.0
67gb|AC145348.3| Mus musculus BAC clone RP23-98E22 from 12, comple... 38 7.0
68gb|AC128704.4| Mus musculus BAC clone RP23-436H14 from 3, comple... 38 7.0
69emb|AL954315.6| Mouse DNA sequence from clone RP23-105O1 on chro... 38 7.0
70gb|AC015564.13| Homo sapiens chromosome 8, clone RP11-351D9, com... 38 7.0
71emb|AL683810.10| Mouse DNA sequence from clone RP23-10L18 on chr... 38 7.0
72emb|AL683880.7| Mouse DNA sequence from clone RP23-124M9 on chro... 38 7.0
73gb|AC026911.15| Mus musculus chromosome 1, clone RP23-190F21, co... 38 7.0
74dbj|AB040910.1| Homo sapiens mRNA for KIAA1477 protein, partial cds 38 7.0
75emb|AL732428.7| Mouse DNA sequence from clone RP23-347P2 on chro... 38 7.0 
>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39 ribulosebisphosphate carboxylase) clones 234
           and 406
          Length = 743

 Score =  220 bits (111), Expect = 9e-55
 Identities = 136/142 (95%), Gaps = 2/142 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   catacgagcatgctttctcgagccatgttggtacatgaacatgggcatacacacattttt 62
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct: 657 catacgagcatgctttctcgagccatgttggtacatgaacatggacatacacatattctt 598

                                                                       
Query: 63  aggaacaaataatgaaagat-aatggagaaggaaaacccaaagcaatgtcagngttgaca 121
           |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 597 aggaacaaataa-gaaagataaatggagaaggaaaacccaaagcaatgtcagagttgaca 539

                                 
Query: 122 aaactgcaatggcactttatat 143
           ||||||||||||||||||||||
Sbjct: 538 aaactgcaatggcactttatat 517
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>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9
          Length = 875

 Score =  218 bits (110), Expect = 3e-54
 Identities = 138/145 (95%), Gaps = 2/145 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatacgagcatgctttctcgagccatgttggtacatgaacatgggcatacacacattt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| 
Sbjct: 780 cacatacgagcatgctttctcgagccatgttggtacatgaacatggacatacacatattc 721

                                                                       
Query: 61  ttaggaacaaataatgaaagat-aatggagaaggaaaacccaaagcaatgtcagngttga 119
           |||||||||||||| ||||||| |||||| |||||||||||||||||||||||| |||||
Sbjct: 720 ttaggaacaaataa-gaaagataaatggacaaggaaaacccaaagcaatgtcagagttga 662

                                    
Query: 120 caaaactgcaatggcactttatatg 144
           |||||||||||||||||||||||||
Sbjct: 661 caaaactgcaatggcactttatatg 637
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>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase
           small subunit mRNA, clone pTS406, 3' end
          Length = 317

 Score =  216 bits (109), Expect = 1e-53
 Identities = 137/144 (95%), Gaps = 2/144 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatacgagcatgctttctcgagccatgttggtacatgaacatgggcatacacacattt 60
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| 
Sbjct: 233 cacatacgagcatgctttctcgagccatgttcgtacatgaacatggacatacacatattc 174

                                                                       
Query: 61  ttaggaacaaataatgaaagat-aatggagaaggaaaacccaaagcaatgtcagngttga 119
           |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 173 ttaggaacaaataa-gaaagataaatggagaaggaaaacccaaagcaatgtcagagttga 115

                                   
Query: 120 caaaactgcaatggcactttatat 143
           ||||||||||||||||||||||||
Sbjct: 114 caaaactgcaatggcactttatat 91
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>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase, small subunit
          Length = 837

 Score =  216 bits (109), Expect = 1e-53
 Identities = 134/140 (95%), Gaps = 2/140 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatacgagcatgctttctcgagccatgttggtacatgaacatgggcatacacacattt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| 
Sbjct: 740 cacatacgagcatgctttctcgagccatgttggtacatgaacatggacatacacatattc 681

                                                                       
Query: 61  ttaggaacaaataatgaaagat-aatggagaaggaaaacccaaagcaatgtcagngttga 119
           |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 680 ttaggaacaaataa-gaaagataaatggagaaggaaaacccaaagcaatgtcagagttga 622

                               
Query: 120 caaaactgcaatggcacttt 139
           ||||||||||||||||||||
Sbjct: 621 caaaactgcaatggcacttt 602
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>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39) (ribulosebisphosphate carboxylase, clone 512)
          Length = 611

 Score =  198 bits (100), Expect = 3e-48
 Identities = 137/147 (93%), Gaps = 2/147 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatacgagcatgctttctcgagccatgttggtacatgaacatgggcatacacacattt 60
           |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||| 
Sbjct: 508 cacatacgagcacgctttctcgagccatgttgttacatgaacatggacatacacatattc 449

                                                                       
Query: 61  ttaggaacaaataatgaaagataa-tggagaaggaaaacccaaagcaatgtcagngttga 119
           |||||||||| ||| |||||| || ||||||||||||||||||||||||||||| |||||
Sbjct: 448 ttaggaacaagtaa-gaaagacaaatggagaaggaaaacccaaagcaatgtcagagttga 390

                                      
Query: 120 caaaactgcaatggcactttatatgtg 146
           |||||||||||||||||||||||||||
Sbjct: 389 caaaactgcaatggcactttatatgtg 363
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>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 816

 Score =  135 bits (68), Expect = 4e-29
 Identities = 127/138 (92%), Gaps = 8/138 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatacgagcatgctttctcgagccatgttggtacatgaacatgggcatacacacattt 60
           ||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||
Sbjct: 704 cacatacgagcatgctttctcgagc-atgttggtacatgaacatgggactacacaca-tt 647

                                                                       
Query: 61  ttaggaacaaataatgaaagataatggagaaggaaaacccaaagcaatgtcagngttgac 120
           |||||||| ||||| ||||||||||||||||||||||||  |||| ||||||| ||||||
Sbjct: 646 ttaggaac-aataa-gaaagataatggagaaggaaaacc--aagc-atgtcagagttgac 592

                             
Query: 121 aaaactgcaatggcactt 138
            |||||||||||||||||
Sbjct: 591 -aaactgcaatggcactt 575
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>emb|AL607043.12| Human DNA sequence from clone RP11-309P22 on chromosome 10 Contains a
             ribosomal protein S6 (RPS6) pseudogene, complete sequence
          Length = 169841

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 41    acatgggcatacacacatttttagg 65
             ||||||||||||| |||||||||||
Sbjct: 10408 acatgggcatacatacatttttagg 10432
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>emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chromosome 9 Contains
             pseudogene similar to part of a novel gene (KIAA1688), a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 6 (SLC25A6) (ANT3)
             pseudogene and a CpG island, complete sequence
          Length = 169550

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 65    gaacaaataatgaaagataat 85
             |||||||||||||||||||||
Sbjct: 18484 gaacaaataatgaaagataat 18464
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>emb|AL161790.23| Human DNA sequence from clone RP11-558L8 on chromosome 9 Contains part of
              the gene for a novel protein (KIAA1608), complete sequence
          Length = 120896

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 77     aaagataatggagaaggaaaa 97
              |||||||||||||||||||||
Sbjct: 106774 aaagataatggagaaggaaaa 106754
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>gb|AC138395.8| Mus musculus chromosome 3, clone RP24-128I24, complete sequence
          Length = 171020

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 51     acacacatttttaggaacaaataa 74
              |||||||| |||||||||||||||
Sbjct: 151686 acacacatgtttaggaacaaataa 151663
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>gb|AC102856.5| Mus musculus chromosome 8, clone RP24-500H8, complete sequence
          Length = 195286

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 34     tacatgaacatgggcatacacaca 57
              |||||||||||| |||||||||||
Sbjct: 130026 tacatgaacatgtgcatacacaca 130049
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>gb|AC112739.5| Rattus norvegicus 7 BAC CH230-108A12 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 234420

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     acatgaacatgggcatacac 54
              ||||||||||||||||||||
Sbjct: 133471 acatgaacatgggcatacac 133452
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>gb|AC122913.4| Mus musculus BAC clone RP23-25J21 from 3, complete sequence
          Length = 205216

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 35     acatgaacatgggcatacacacattttt 62
              |||||||||||  |||||||||||||||
Sbjct: 184580 acatgaacatgcacatacacacattttt 184553
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>emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on chromosome 6, complete
              sequence
          Length = 175757

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    aaaactgcaatggcacttta 140
              ||||||||||||||||||||
Sbjct: 166594 aaaactgcaatggcacttta 166575
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>gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, complete sequence
          Length = 153684

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 51    acacacatttttaggaacaaataa 74
             |||||||| |||||||||||||||
Sbjct: 92069 acacacatgtttaggaacaaataa 92046
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>emb|X92945.2|EFCAT501 Enterococcus faecalis plasmid pRE25 DNA
          Length = 50237

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    ggaacaaataatgaaagata 83
             ||||||||||||||||||||
Sbjct: 36657 ggaacaaataatgaaagata 36676
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>emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5
          Length = 341050

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    tgggcatacacacattttta 63
             ||||||||||||||||||||
Sbjct: 27477 tgggcatacacacattttta 27496
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>gb|AF516335.1| Enterococcus faecium plasmid pUW786 multiple antibiotic resistance gene
             cluster, complete sequence
          Length = 17510

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    ggaacaaataatgaaagata 83
             ||||||||||||||||||||
Sbjct: 13594 ggaacaaataatgaaagata 13613
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>ref|NM_001002110.1| Danio rerio zgc:86839 (zgc:86839), mRNA
          Length = 1054

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   acatacgagcatgctttctc 21
           ||||||||||||||||||||
Sbjct: 722 acatacgagcatgctttctc 703
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>gb|AC063968.5| Genomic sequence for Mus musculus, clone RP23-105K11, complete sequence
          Length = 222520

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 35     acatgaacatgggcatacacacat 58
              ||||||||||||||||||| ||||
Sbjct: 217582 acatgaacatgggcatacatacat 217605
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>emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 in linkage group 12,
              complete sequence
          Length = 155592

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 33     gtacatgaacatgggcatacacac 56
              |||||||||||||| |||||||||
Sbjct: 152158 gtacatgaacatggacatacacac 152135
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>gb|BC071486.1| Danio rerio zgc:86839, mRNA (cDNA clone MGC:86839 IMAGE:6902520),
           complete cds
          Length = 1054

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   acatacgagcatgctttctc 21
           ||||||||||||||||||||
Sbjct: 722 acatacgagcatgctttctc 703
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>gb|AC091827.2| Homo sapiens chromosome 5 clone CTD-2006A19, complete sequence
          Length = 164820

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 41    acatgggcatacacacatttttag 64
             ||||||||||||||||| ||||||
Sbjct: 61720 acatgggcatacacacaattttag 61697
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>gb|AF299292.1|AF299292 Staphylococcus intermedius erythromycin resistance methylase
            (erm(B)), ORF3, IS1182 transposase, ORFX, ORFY,
            streptomycin adenyltransferase (aadE), streptothricin
            acetyltransferase (sat4), and aminoglycoside
            phosphotransferase (aphA-3) genes, complete cds
          Length = 7680

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   ggaacaaataatgaaagata 83
            ||||||||||||||||||||
Sbjct: 2953 ggaacaaataatgaaagata 2972
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>gb|AF408195.1|AF408195 Enterococcus faecalis plasmid pEF418, partial sequence
          Length = 15890

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   ggaacaaataatgaaagata 83
            ||||||||||||||||||||
Sbjct: 2161 ggaacaaataatgaaagata 2180
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>gb|U73025.1|SAU73025 Staphylococcus aureus transposon Tn5405 unknown gene, complete cds
          Length = 1364

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 64  ggaacaaataatgaaagata 83
           ||||||||||||||||||||
Sbjct: 717 ggaacaaataatgaaagata 736
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 42       catgggcatacacacatttttagg 65
                |||||||||| |||||||||||||
Sbjct: 28187903 catgggcatagacacatttttagg 28187926



 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 88      agaaggaaaacccaaagcaa 107
               ||||||||||||||||||||
Sbjct: 1491873 agaaggaaaacccaaagcaa 1491854
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>gb|AC151901.3| Mus musculus BAC clone RP23-271E15 from chromosome 10, complete
             sequence
          Length = 182748

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 35    acatgaacatgggcatacacacat 58
             ||||||||||||||||||| ||||
Sbjct: 82489 acatgaacatgggcatacatacat 82512
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>gb|AF507977.1| Enterococcus faecium plasmid pRUM, complete sequence
          Length = 24873

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    ggaacaaataatgaaagata 83
             ||||||||||||||||||||
Sbjct: 10985 ggaacaaataatgaaagata 10966
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>gb|CP000028.1| Staphylococcus epidermidis RP62A plasmid pSERP, complete sequence
          Length = 27310

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    ggaacaaataatgaaagata 83
             ||||||||||||||||||||
Sbjct: 11328 ggaacaaataatgaaagata 11309
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>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0576F08
          Length = 135314

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    agaaggaaaacccaaagcaa 107
             ||||||||||||||||||||
Sbjct: 55294 agaaggaaaacccaaagcaa 55275
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>dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1717_A09
          Length = 203132

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 42     catgggcatacacacatttttagg 65
              |||||||||| |||||||||||||
Sbjct: 177550 catgggcatagacacatttttagg 177573
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>emb|BX908751.8| Zebrafish DNA sequence from clone DKEY-223N17 in linkage group 18,
             complete sequence
          Length = 157961

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    gaacaaataatgaaagataa 84
             ||||||||||||||||||||
Sbjct: 53620 gaacaaataatgaaagataa 53601
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>gb|AC129022.5| Mus musculus BAC clone RP23-318P2 from chromosome 12, complete sequence
          Length = 206083

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 95    aaacccaaagcaatgtcag 113
             |||||||||||||||||||
Sbjct: 42496 aaacccaaagcaatgtcag 42478
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>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
               sequence
          Length = 1178688

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 95      aaacccaaagcaatgtcag 113
               |||||||||||||||||||
Sbjct: 1130897 aaacccaaagcaatgtcag 1130915
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>gb|AY694150.1| Dicentrarchus labrax clone DLA0233E microsatellite sequence
          Length = 716

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 69  aaataatgaaagataatgg 87
           |||||||||||||||||||
Sbjct: 674 aaataatgaaagataatgg 692
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>gb|AC132284.5| Mus musculus BAC clone RP24-351O18 from chromosome 5, complete sequence
          Length = 174681

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 66     aacaaataatgaaagataa 84
              |||||||||||||||||||
Sbjct: 150543 aacaaataatgaaagataa 150525
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>gb|AC144825.2| Danio rerio clone CH211-178A5, complete sequence
          Length = 53370

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    acacatttttaggaacaaa 71
             |||||||||||||||||||
Sbjct: 37910 acacatttttaggaacaaa 37928
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>ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 protein phosphatase
           (CNI04270) partial mRNA
          Length = 3071

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 95  aaacccaaagcaatgtcag 113
           |||||||||||||||||||
Sbjct: 80  aaacccaaagcaatgtcag 98
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>gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome 1, complete sequence
          Length = 207475

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     acatgggcatacacacatt 59
              |||||||||||||||||||
Sbjct: 100255 acatgggcatacacacatt 100273
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>gb|AC118240.8| Mus musculus chromosome 16, clone RP23-186J5, complete sequence
          Length = 222869

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 59     ttttaggaacaaataatga 77
              |||||||||||||||||||
Sbjct: 124124 ttttaggaacaaataatga 124142
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>gb|AC146760.13| Medicago truncatula clone mth2-174d3, complete sequence
          Length = 122316

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 66     aacaaataatgaaagataa 84
              |||||||||||||||||||
Sbjct: 121885 aacaaataatgaaagataa 121903
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>gb|BC113869.1| Homo sapiens MAP/microtubule affinity-regulating kinase 1, mRNA (cDNA
            clone MGC:126513 IMAGE:40036731), complete cds
          Length = 3951

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   ggaacaaataatgaaagat 82
            |||||||||||||||||||
Sbjct: 1082 ggaacaaataatgaaagat 1100
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>gb|BC114478.1| Homo sapiens MAP/microtubule affinity-regulating kinase 1, mRNA (cDNA
            clone MGC:126512 IMAGE:40036730), complete cds
          Length = 3951

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   ggaacaaataatgaaagat 82
            |||||||||||||||||||
Sbjct: 1082 ggaacaaataatgaaagat 1100
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>gb|AC157275.2| Mus musculus BAC clone RP24-164M6 from chromosome 12, complete sequence
          Length = 175123

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 90    aaggaaaacccaaagcaatgtca 112
             |||||||||||||||||| ||||
Sbjct: 99058 aaggaaaacccaaagcaaagtca 99036
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>gb|AC124864.3| Homo sapiens BAC clone RP11-570J4 from 4, complete sequence
          Length = 166797

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 35    acatgaacatgggcatacacaca 57
             ||||||||| |||||||||||||
Sbjct: 65149 acatgaacacgggcatacacaca 65171
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>gb|AC079073.7| Homo sapiens chromosome 11, clone RP11-72A10, complete sequence
          Length = 173119

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 73     aatgaaagataatggagaa 91
              |||||||||||||||||||
Sbjct: 102478 aatgaaagataatggagaa 102460
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>ref|NM_018650.2| Homo sapiens MAP/microtubule affinity-regulating kinase 1 (MARK1),
            mRNA
          Length = 4638

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   ggaacaaataatgaaagat 82
            |||||||||||||||||||
Sbjct: 1437 ggaacaaataatgaaagat 1455
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>dbj|AK027493.1| Homo sapiens cDNA FLJ14587 fis, clone NT2RM4001758, moderately
           similar to PUTATIVE SERINE/THREONINE-PROTEIN KINASE EMK
           (EC 2.7.1.-)
          Length = 2720

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 64  ggaacaaataatgaaagat 82
           |||||||||||||||||||
Sbjct: 503 ggaacaaataatgaaagat 521
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>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence
          Length = 139476

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    atgaacatgggcatacaca 55
             |||||||||||||||||||
Sbjct: 31202 atgaacatgggcatacaca 31220
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>gb|AC015743.9| Homo sapiens chromosome 8, clone RP11-1G11, complete sequence
          Length = 193989

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 35     acatgaacatgggcatacacaca 57
              ||||| |||||||||||||||||
Sbjct: 161840 acatgcacatgggcatacacaca 161862
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>gb|AC005341.13| Homo sapiens chromosome , clone RP11-146P2, complete sequence
          Length = 161449

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 73    aatgaaagataatggagaa 91
             |||||||||||||||||||
Sbjct: 27096 aatgaaagataatggagaa 27078
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>gb|AC090614.5| Homo sapiens chromosome 17, clone RP11-577I13, complete sequence
          Length = 230956

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 73     aatgaaagataatggagaa 91
              |||||||||||||||||||
Sbjct: 179647 aatgaaagataatggagaa 179629
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>gb|AC000067.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 100h In DGCR Region,
             complete sequence
          Length = 40645

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 90    aaggaaaacccaaagcaat 108
             |||||||||||||||||||
Sbjct: 17806 aaggaaaacccaaagcaat 17824
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>ref|XM_624249.1| PREDICTED: Apis mellifera similar to CG3848-PC, isoform C
            (LOC409844), mRNA
          Length = 2950

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 122  aaactgcaatggcacttta 140
            |||||||||||||||||||
Sbjct: 2799 aaactgcaatggcacttta 2781
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>gb|AC009507.3| Homo sapiens BAC clone RP11-543L11 from 2, complete sequence
          Length = 122213

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 55    acatttttaggaacaaata 73
             |||||||||||||||||||
Sbjct: 64842 acatttttaggaacaaata 64860
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>gb|AC158237.2| Mus musculus BAC clone RP23-142I8 from chromosome 9, complete sequence
          Length = 179606

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 35    acatgaacatgggcatacacaca 57
             ||||||||||||||| |||||||
Sbjct: 82839 acatgaacatgggcacacacaca 82817
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>gb|AC068831.17| Homo sapiens chromosome 15, clone RP11-2O19, complete sequence
          Length = 136975

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 78    aagataatggagaaggaaa 96
             |||||||||||||||||||
Sbjct: 99913 aagataatggagaaggaaa 99931
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>gb|AF154845.1|AF154845 Homo sapiens MARK (MARK) mRNA, complete cds
          Length = 2965

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   ggaacaaataatgaaagat 82
            |||||||||||||||||||
Sbjct: 1172 ggaacaaataatgaaagat 1190
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>emb|BX005041.11| Zebrafish DNA sequence from clone DKEY-38L12 in linkage group 18,
              complete sequence
          Length = 190853

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 63     aggaacaaataatgaaagataat 85
              ||||| |||||||||||||||||
Sbjct: 119478 aggaagaaataatgaaagataat 119456
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>emb|BX465868.6| Zebrafish DNA sequence from clone DKEY-42I9 in linkage group 22, complete
              sequence
          Length = 222195

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 56     catttttaggaacaaataa 74
              |||||||||||||||||||
Sbjct: 155591 catttttaggaacaaataa 155573
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>gb|BC084273.1| Xenopus laevis hypothetical LOC495100, mRNA (cDNA clone MGC:82131
            IMAGE:7012144), complete cds
          Length = 1516

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 55   acatttttaggaacaaata 73
            |||||||||||||||||||
Sbjct: 1122 acatttttaggaacaaata 1140
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>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome
          Length = 1698955

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 66     aacaaataatgaaagataa 84
              |||||||||||||||||||
Sbjct: 281531 aacaaataatgaaagataa 281513
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>emb|AJ274968.1|SHE274968 Sida hermaphrodita internal transcribed spacer 1 (ITS1)
          Length = 289

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 63  aggaacaaataatgaaaga 81
           |||||||||||||||||||
Sbjct: 196 aggaacaaataatgaaaga 214
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>gb|AY656839.1| Leishmania donovani chagasi genomic sequence
          Length = 31876

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 85  tggagaaggaaaacccaaagcaa 107
           |||||||||||||| ||||||||
Sbjct: 899 tggagaaggaaaacgcaaagcaa 877
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>emb|BX323846.2| Pig DNA sequence from clone XX-43B6, complete sequence
          Length = 80149

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 78    aagataatggagaaggaaaaccc 100
             ||||| |||||||||||||||||
Sbjct: 65032 aagatgatggagaaggaaaaccc 65054
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>gb|AC145348.3| Mus musculus BAC clone RP23-98E22 from 12, complete sequence
          Length = 183380

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 95     aaacccaaagcaatgtcag 113
              |||||||||||||||||||
Sbjct: 179292 aaacccaaagcaatgtcag 179274
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>gb|AC128704.4| Mus musculus BAC clone RP23-436H14 from 3, complete sequence
          Length = 212119

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 35     acatgaacatgggcatacacaca 57
              ||||| |||||||||||||||||
Sbjct: 126753 acatgcacatgggcatacacaca 126731
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>emb|AL954315.6| Mouse DNA sequence from clone RP23-105O1 on chromosome 2, complete
             sequence
          Length = 167210

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 47    gcatacacacatttttaggaacaaata 73
             |||||||||||| |||| |||||||||
Sbjct: 90854 gcatacacacatatttacgaacaaata 90880
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>gb|AC015564.13| Homo sapiens chromosome 8, clone RP11-351D9, complete sequence
          Length = 193425

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 35    acatgaacatgggcatacacaca 57
             ||||| |||||||||||||||||
Sbjct: 46983 acatgcacatgggcatacacaca 47005
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>emb|AL683810.10| Mouse DNA sequence from clone RP23-10L18 on chromosome 2, complete
             sequence
          Length = 186882

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    gaacatgggcatacacaca 57
             |||||||||||||||||||
Sbjct: 79545 gaacatgggcatacacaca 79527
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>emb|AL683880.7| Mouse DNA sequence from clone RP23-124M9 on chromosome 4, complete
             sequence
          Length = 210306

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 74    atgaaagataatggagaag 92
             |||||||||||||||||||
Sbjct: 75776 atgaaagataatggagaag 75758
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>gb|AC026911.15| Mus musculus chromosome 1, clone RP23-190F21, complete sequence
          Length = 239743

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     acatgggcatacacacatt 59
              |||||||||||||||||||
Sbjct: 223699 acatgggcatacacacatt 223717
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>dbj|AB040910.1| Homo sapiens mRNA for KIAA1477 protein, partial cds
          Length = 4638

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 64   ggaacaaataatgaaagat 82
            |||||||||||||||||||
Sbjct: 1437 ggaacaaataatgaaagat 1455
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>emb|AL732428.7| Mouse DNA sequence from clone RP23-347P2 on chromosome 2, complete
             sequence
          Length = 123627

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    gaacatgggcatacacaca 57
             |||||||||||||||||||
Sbjct: 27749 gaacatgggcatacacaca 27767


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,892,358
Number of Sequences: 3902068
Number of extensions: 1892358
Number of successful extensions: 139417
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139157
Number of HSP's gapped (non-prelim): 252
length of query: 146
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 125
effective length of database: 17,151,101,840
effective search space: 2143887730000
effective search space used: 2143887730000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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