ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal39c13 |
|---|---|
| Clone Library Name | barley_pub |
>SOT1_SPIOL (Q41364) 2-oxoglutarate/malate translocator, chloroplast precursor| Length = 569 Score = 121 bits (303), Expect = 5e-28 Identities = 50/62 (80%), Positives = 55/62 (88%) Frame = -3 Query: 336 MSFXSXLMGGLTHYGIGSAPVFYGAGYVPLAEWWGYGFVISVVNIIIWLGAGGFWWKMIG 157 +SF S LMGGLTHYGIGSAPVFYGA YVPL +WWGYGF+IS+VN+IIWLG GG WWK IG Sbjct: 508 LSFLSNLMGGLTHYGIGSAPVFYGANYVPLPQWWGYGFLISIVNLIIWLGVGGLWWKAIG 567 Query: 156 LW 151 LW Sbjct: 568 LW 569
>YFLS_BACSU (O34726) Putative malate transporter yflS| Length = 478 Score = 97.1 bits (240), Expect = 1e-20 Identities = 35/62 (56%), Positives = 49/62 (79%) Frame = -3 Query: 336 MSFXSXLMGGLTHYGIGSAPVFYGAGYVPLAEWWGYGFVISVVNIIIWLGAGGFWWKMIG 157 ++F S L G THYG G+APVF+GAGY+P +WW GF++S+V+II+WL GG WWK++G Sbjct: 417 LAFISNLFGSTTHYGSGAAPVFFGAGYIPQGKWWSIGFILSIVHIIVWLVIGGLWWKVLG 476 Query: 156 LW 151 +W Sbjct: 477 IW 478
>Y020_HAEIN (Q57048) Hypothetical protein HI0020| Length = 479 Score = 56.2 bits (134), Expect = 2e-08 Identities = 23/57 (40%), Positives = 34/57 (59%) Frame = -3 Query: 330 FXSXLMGGLTHYGIGSAPVFYGAGYVPLAEWWGYGFVISVVNIIIWLGAGGFWWKMI 160 F + G +THYG G P+ +GAGY + WW G +I+ ++II L G WWK++ Sbjct: 417 FANSYGGSVTHYGGGPGPIAFGAGYNDIKSWWITGAIIAFGSLIIHLTIGMAWWKLL 473
>YBHI_ECOLI (P75763) Inner membrane protein ybhI| Length = 477 Score = 54.7 bits (130), Expect = 6e-08 Identities = 20/60 (33%), Positives = 34/60 (56%) Frame = -3 Query: 330 FXSXLMGGLTHYGIGSAPVFYGAGYVPLAEWWGYGFVISVVNIIIWLGAGGFWWKMIGLW 151 F + G +THYG + PV +G GY + WW G V++++ ++ + G +WW M+ W Sbjct: 415 FSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGW 474
>TTDT_ECOLI (P39414) Putative tartrate carrier (Tartrate transporter)| (Tartrate/succinate antiporter) Length = 487 Score = 45.8 bits (107), Expect = 3e-05 Identities = 15/49 (30%), Positives = 31/49 (63%) Frame = -3 Query: 306 LTHYGIGSAPVFYGAGYVPLAEWWGYGFVISVVNIIIWLGAGGFWWKMI 160 LT Y G +P++YG+GY+P A++W G + ++ +++ + G W ++ Sbjct: 437 LTPYATGPSPIYYGSGYLPTADYWRLGAIFGLIFLVLLVITGLLWMPVV 485
>CITT_ECOLI (P0AE74) Citrate carrier (Citrate transporter) (Citrate/succinate| antiporter) Length = 487 Score = 42.4 bits (98), Expect = 3e-04 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = -3 Query: 318 LMGGLTHYGIGSAPVFYGAGYVPLAEWWGYGFVISVVNIIIWLGAGGFWWKMIGLW 151 +MG LT Y G + YG GYV ++W G + V+ I + L G W ++ +W Sbjct: 434 IMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVG---WPILAMW 486
>CITT_ECO57 (P0AE75) Citrate carrier (Citrate transporter) (Citrate/succinate| antiporter) Length = 487 Score = 42.4 bits (98), Expect = 3e-04 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = -3 Query: 318 LMGGLTHYGIGSAPVFYGAGYVPLAEWWGYGFVISVVNIIIWLGAGGFWWKMIGLW 151 +MG LT Y G + YG GYV ++W G + V+ I + L G W ++ +W Sbjct: 434 IMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVG---WPILAMW 486
>PSBC_GUITH (O78426) Photosystem II 44 kDa reaction center protein (P6 protein)| (CP43) Length = 473 Score = 31.6 bits (70), Expect = 0.51 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 10/40 (25%) Frame = -3 Query: 261 GYVPLAEWWGYGFVISVVNI------IIWLG----AGGFW 172 GYV + W G G+++SV N+ IW+G AGGFW Sbjct: 211 GYVLKSPWGGDGWIVSVNNMEDVVGGHIWIGFTCIAGGFW 250
>DPOLZ_HUMAN (O60673) DNA polymerase zeta catalytic subunit (EC 2.7.7.7) (hREV3)| Length = 3130 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Frame = +1 Query: 148 SPQTNHLPPEASSTKPDDDVNNGDDKSIA-----PPLSQRNIARSIEDG 279 SP + +PP PD NGDD+ + P L+ N + I+DG Sbjct: 2119 SPDSPVIPPWQQPISPDSKALNGDDRPSSPVEELPSLAFENFLKPIKDG 2167
>Y195A_HAEIN (Q57362) MscS family protein HI0195.1 precursor| Length = 1111 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -2 Query: 205 HHHLAWCWRLLVEDDWFVVRNTVNVGLPISTR 110 H ++AWC W++VRNT+ G+ +S+R Sbjct: 719 HSYIAWCV-------WWLVRNTIYRGITVSSR 743
>DPOLZ_MOUSE (Q61493) DNA polymerase zeta catalytic subunit (EC 2.7.7.7)| (Seizure-related protein 4) Length = 3122 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%) Frame = +1 Query: 148 SPQTNHLPPEASSTKPDDDVNNGDDKSIAP-----PLSQRNIARSIEDG 279 SP + +PP + PD NGDD+ +P L+ N + I+DG Sbjct: 2110 SPDSPGIPPWQQAASPDFRSLNGDDRHSSPGKELCSLAVENFLKPIKDG 2158
>AMELX_RAT (P63278) Amelogenin, X isoform precursor (Leucine-rich amelogenin| peptide) (LRAP) Length = 210 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +2 Query: 104 VRPRRNRKSHIYCVSHHKPIIFHQKPPAPSQMMMLTTEMTNP*P-HHSASGT 256 V +++ SH HH P++ Q+P AP Q MM P P HHS + T Sbjct: 83 VLSQQHPPSHTLQPHHHLPVVPAQQPVAPQQPMM-------PVPGHHSMTPT 127
>AMELX_MOUSE (P63277) Amelogenin, X isoform precursor (Leucine-rich amelogenin| peptide) (LRAP) Length = 210 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +2 Query: 104 VRPRRNRKSHIYCVSHHKPIIFHQKPPAPSQMMMLTTEMTNP*P-HHSASGT 256 V +++ SH HH P++ Q+P AP Q MM P P HHS + T Sbjct: 83 VLSQQHPPSHTLQPHHHLPVVPAQQPVAPQQPMM-------PVPGHHSMTPT 127
>YE6A_THEMA (P58010) Hypothetical protein TM1467.1| Length = 168 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = -3 Query: 264 AGYVPLAEWWGYGFVISVVNIIIWLG 187 A Y+P+ WG FVISV +I++++G Sbjct: 121 ADYIPVYLPWGRKFVISVGDILVFIG 146
>GGABP_MOUSE (Q9D8L5) GGA-binding partner| Length = 442 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +1 Query: 148 SPQTNHLPPEASSTKPDDDVNNGDDKSIAPPLSQRNIARS 267 SP T HLPP+A + DD + D ++ +S+ I +S Sbjct: 57 SPSTGHLPPDAVISSADD--THADSSLMSQTISKAQIQQS 94
>SYL_MYCGA (Q7NB47) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 805 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 124 EVPHLLCFSPQTNHLPPEASSTKPDDDVNNGDDKSIAPPLSQRNIARSI 270 E+P L FSP + LPP A N DD+ + P + Q+ R I Sbjct: 443 ELPQLSDFSPNKDGLPPLA----------NADDQWLHPIIDQKKYRREI 481
>SOSD1_PONPY (Q5R5D2) Sclerostin domain-containing protein 1 precursor| Length = 206 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/53 (26%), Positives = 24/53 (45%) Frame = +2 Query: 20 RVQTKRMDXSTKLVVXSTCATCKCFARFVRPRRNRKSHIYCVSHHKPIIFHQK 178 R+Q + D ST+ + CKC R+ R + +S KP+ H++ Sbjct: 142 RIQLQCQDGSTRTYKITVVTACKC-KRYTRQHNESSHNFESMSPAKPVQHHRE 193
>SOSD1_HUMAN (Q6X4U4) Sclerostin domain-containing protein 1 precursor| (Ectodermal BMP inhibitor) (Ectodin) (Uterine sensitization-associated gene 1 protein) (USAG-1) Length = 206 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/53 (26%), Positives = 24/53 (45%) Frame = +2 Query: 20 RVQTKRMDXSTKLVVXSTCATCKCFARFVRPRRNRKSHIYCVSHHKPIIFHQK 178 R+Q + D ST+ + CKC R+ R + +S KP+ H++ Sbjct: 142 RIQLQCQDGSTRTYKITVVTACKC-KRYTRQHNESSHNFESMSPAKPVQHHRE 193
>RCEM_RHORU (P10718) Reaction center protein M chain (Photosynthetic reaction| center M subunit) Length = 305 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%) Frame = -3 Query: 270 YGAGYVPLAE--WWGYGFVISVVNIIIW 193 YG G+ PLAE WW +I++W Sbjct: 100 YGLGFAPLAEGGWWQIAGFFLTTSILLW 127
>UAS3_DROME (Q9VCE9) Protein UBASH3A homolog| Length = 751 Score = 23.1 bits (48), Expect(2) = 7.0 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +1 Query: 169 PPEASSTKPDDDVNNGDDKSIAP 237 PP A +PDD ++ D S+ P Sbjct: 459 PPAAQPPRPDDTLSVHSDHSLHP 481 Score = 23.1 bits (48), Expect(2) = 7.0 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +3 Query: 48 RQNLWSAQPVPLANVLLVSFALVEIGSP-TFTVFLTTNQSSSTRSLQHQ 191 RQ L +P LL S L +P T T+ +TTN SSS+ S+ Q Sbjct: 403 RQTLKPCLELPSVQ-LLNSHNLTHQHNPNTPTIEITTNMSSSSTSMSKQ 450
>XRN1_SCHPO (P40383) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Exonuclease 2)| (Exonuclease II) (Exo II) (p140) Length = 1328 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +2 Query: 119 NRKSHIYCVSHHKPIIFHQKPPAPSQMMMLTTEMTNP*PHHSASGT 256 N++ H H KP HQ PP P ++ + + HHS +GT Sbjct: 1253 NKREH-----HPKPFSLHQVPP-PESLIHKSKSKFSKGNHHSTNGT 1292
>NADD_SYNY3 (P73246) Probable nicotinate-nucleotide adenylyltransferase (EC| 2.7.7.18) (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 200 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +1 Query: 205 VNNGDDKSIAPPLSQRNIARSIED 276 VN GDD++I PP+S +I R I D Sbjct: 158 VNQGDDQAITPPISS-SIYRQIRD 180
>ABP1_YEAST (P15891) Actin-binding protein| Length = 591 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 175 EASSTKPDDDVNNGDDKSIAPPLSQRNIA 261 E + DDD ++ +D++ PPL RN+A Sbjct: 428 EEEPEENDDDWDDDEDEAAQPPLPSRNVA 456
>ESR2_PIG (Q9XSW2) Estrogen receptor beta (ER-beta)| Length = 526 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +2 Query: 86 KCFARFVRPRRNRKSHIYCVSHHK 157 +C R VR +RN + H++C+S K Sbjct: 220 RCGYRIVRKQRNSEGHLHCLSRAK 243
>SOSD1_RAT (Q642G2) Sclerostin domain-containing protein 1 precursor (Uterine| sensitization-associated gene 1 protein) (USAG-1) (Wnt-signaling modulator) Length = 206 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = +2 Query: 20 RVQTKRMDXSTKLVVXSTCATCKCFARFVRPRRNRKSHIYCVSHHKPIIFHQK 178 R+Q + D ST+ + CKC R+ R + VS KP H++ Sbjct: 142 RIQLQCQDGSTRTYKITVVTACKC-KRYTRQHNESSHNFESVSPAKPAQHHRE 193
>SOSD1_MOUSE (Q9CQN4) Sclerostin domain-containing protein 1 precursor| (Ectodermal BMP inhibitor) (Ectodin) (Uterine sensitization-associated gene 1 protein) (USAG-1) (Sclerostin-like protein) Length = 206 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = +2 Query: 20 RVQTKRMDXSTKLVVXSTCATCKCFARFVRPRRNRKSHIYCVSHHKPIIFHQK 178 R+Q + D ST+ + CKC R+ R + VS KP H++ Sbjct: 142 RIQLQCQDGSTRTYKITVVTACKC-KRYTRQHNESSHNFESVSPAKPAQHHRE 193
>S6A16_HUMAN (Q9GZN6) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT5 (Solute carrier family 6 member 16) Length = 736 Score = 27.3 bits (59), Expect = 9.7 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Frame = -3 Query: 318 LMGG--LTHYGIGSAPVFYGAGYVPLAE-WWGYGFVISVVNIIIWLGAGGFWWKMIGLW 151 L GG L++ GIG V A Y+P + F++SV+N++ L F + ++G W Sbjct: 341 LAGGQVLSNTGIGLGSVASLASYMPQSNNCLSDAFLVSVINLLTLLVFTSFNFCVLGFW 399
>GDIS_BOVIN (Q9TU03) Rho GDP-dissociation inhibitor 2 (Rho GDI 2) (Rho-GDI| beta) (Ly-GDI) (D4-GDP-dissociation inhibitor) (D4-GDI) Length = 200 Score = 27.3 bits (59), Expect = 9.7 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = -2 Query: 205 HHHLAWCWRLLVEDDW 158 H HL W W L ++ DW Sbjct: 183 HDHLTWEWNLSIKKDW 198
>WWP1_HUMAN (Q9H0M0) NEDD4-like E3 ubiquitin-protein ligase WWP1 (EC 6.3.2.-)| (WW domain-containing protein 1) (Atropin-1-interacting protein 5) (AIP5) Length = 922 Score = 27.3 bits (59), Expect = 9.7 Identities = 23/79 (29%), Positives = 34/79 (43%) Frame = +1 Query: 1 TAEKHCTGTN*KNGXVDKTCGXLNLCHLQMFCSFRSPSSK*EVPHLLCFSPQTNHLPPEA 180 TA GTN + V + N C + +PSS P + P+ N P+ Sbjct: 178 TARLAVEGTNGIDNHVPTSTLVQNSCCSYVVNGDNTPSS----PSQVAARPK-NTPAPKP 232 Query: 181 SSTKPDDDVNNGDDKSIAP 237 +++P DD NG+ S AP Sbjct: 233 LASEPADDTVNGESSSFAP 251
>NUSG_STRP8 (P68895) Transcription antitermination protein nusG| Length = 179 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -2 Query: 178 LLVEDDWFVVRNTVNVGLPISTRANETSKT 89 ++ ++ WFVVRNT NV + + N + T Sbjct: 74 VMTDEAWFVVRNTPNVTGFVGSHGNRSKPT 103
>NUSG_STRP6 (Q5XE43) Transcription antitermination protein nusG| Length = 179 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -2 Query: 178 LLVEDDWFVVRNTVNVGLPISTRANETSKT 89 ++ ++ WFVVRNT NV + + N + T Sbjct: 74 VMTDEAWFVVRNTPNVTGFVGSHGNRSKPT 103
>NUSG_STRP3 (P68894) Transcription antitermination protein nusG| Length = 179 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -2 Query: 178 LLVEDDWFVVRNTVNVGLPISTRANETSKT 89 ++ ++ WFVVRNT NV + + N + T Sbjct: 74 VMTDEAWFVVRNTPNVTGFVGSHGNRSKPT 103
>NUSG_STRP1 (P68893) Transcription antitermination protein nusG| Length = 179 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -2 Query: 178 LLVEDDWFVVRNTVNVGLPISTRANETSKT 89 ++ ++ WFVVRNT NV + + N + T Sbjct: 74 VMTDEAWFVVRNTPNVTGFVGSHGNRSKPT 103 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,970,243 Number of Sequences: 219361 Number of extensions: 1079229 Number of successful extensions: 3466 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3357 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3464 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
