| Clone Name | rbaal39c13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 180 bits (91), Expect = 2e-42 Identities = 173/201 (86%) Strand = Plus / Minus Query: 133 catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 192 |||||||| || | |||||||||| || | |||||||||||||||||||||||||||||| Sbjct: 20049373 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 20049314 Query: 193 ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 252 |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| || Sbjct: 20049313 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 20049254 Query: 253 aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 312 ||||||||| || || |||||||| || || ||||| || ||||| || || || ||||| Sbjct: 20049253 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 20049194 Query: 313 catgaggnttgaaangaatga 333 ||||| | |||| | |||||| Sbjct: 20049193 catgatgtttgagaggaatga 20049173 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ggtacaaactaaaagaatgg 41 |||||||||||||||||||| Sbjct: 20049506 ggtacaaactaaaagaatgg 20049487
>dbj|AK099798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097M20, full insert sequence Length = 1962 Score = 180 bits (91), Expect = 2e-42 Identities = 173/201 (86%) Strand = Plus / Minus Query: 133 catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 192 |||||||| || | |||||||||| || | |||||||||||||||||||||||||||||| Sbjct: 1700 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 1641 Query: 193 ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 252 |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| || Sbjct: 1640 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 1581 Query: 253 aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 312 ||||||||| || || |||||||| || || ||||| || ||||| || || || ||||| Sbjct: 1580 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 1521 Query: 313 catgaggnttgaaangaatga 333 ||||| | |||| | |||||| Sbjct: 1520 catgatgtttgagaggaatga 1500 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ggtacaaactaaaagaatgg 41 |||||||||||||||||||| Sbjct: 1833 ggtacaaactaaaagaatgg 1814
>dbj|AK061957.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F09, full insert sequence Length = 1506 Score = 180 bits (91), Expect = 2e-42 Identities = 173/201 (86%) Strand = Plus / Minus Query: 133 catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 192 |||||||| || | |||||||||| || | |||||||||||||||||||||||||||||| Sbjct: 1308 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 1249 Query: 193 ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 252 |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| || Sbjct: 1248 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 1189 Query: 253 aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 312 ||||||||| || || |||||||| || || ||||| || ||||| || || || ||||| Sbjct: 1188 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 1129 Query: 313 catgaggnttgaaangaatga 333 ||||| | |||| | |||||| Sbjct: 1128 catgatgtttgagaggaatga 1108 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ggtacaaactaaaagaatgg 41 |||||||||||||||||||| Sbjct: 1441 ggtacaaactaaaagaatgg 1422
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 180 bits (91), Expect = 2e-42 Identities = 173/201 (86%) Strand = Plus / Minus Query: 133 catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 192 |||||||| || | |||||||||| || | |||||||||||||||||||||||||||||| Sbjct: 19975587 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 19975528 Query: 193 ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 252 |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| || Sbjct: 19975527 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 19975468 Query: 253 aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 312 ||||||||| || || |||||||| || || ||||| || ||||| || || || ||||| Sbjct: 19975467 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 19975408 Query: 313 catgaggnttgaaangaatga 333 ||||| | |||| | |||||| Sbjct: 19975407 catgatgtttgagaggaatga 19975387 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ggtacaaactaaaagaatgg 41 |||||||||||||||||||| Sbjct: 19975720 ggtacaaactaaaagaatgg 19975701
>emb|AL713900.4|CNS07YQ0 Oryza sativa chromosome 12, . BAC OJ1126_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 99791 Score = 180 bits (91), Expect = 2e-42 Identities = 173/201 (86%) Strand = Plus / Minus Query: 133 catttactgtgtttctcaccacaaaccaatcatcttccaccagaagcctccagcaccaag 192 |||||||| || | |||||||||| || | |||||||||||||||||||||||||||||| Sbjct: 29535 catttactttgctcctcaccacaagccgagcatcttccaccagaagcctccagcaccaag 29476 Query: 193 ccagatgatgatgttaacaacggagatgacaaatccatagccccaccactcagccagcgg 252 |||||||||||||||||| | ||| |||||||||||||| |||||||||| |||||| || Sbjct: 29475 ccagatgatgatgttaacgatggaaatgacaaatccatacccccaccactgagccagtgg 29416 Query: 253 aacatagcccgctccatagaagacgggggctgaccctatgccataatgggtcaggccacc 312 ||||||||| || || |||||||| || || ||||| || ||||| || || || ||||| Sbjct: 29415 aacatagccagcaccgtagaagacaggagcagacccaattccatagtgcgtgagtccacc 29356 Query: 313 catgaggnttgaaangaatga 333 ||||| | |||| | |||||| Sbjct: 29355 catgatgtttgagaggaatga 29335 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ggtacaaactaaaagaatgg 41 |||||||||||||||||||| Sbjct: 29668 ggtacaaactaaaagaatgg 29649
>dbj|AB112936.1| Zea mays ZmpOMT1 mRNA for plastidic 2-oxoglutarate/malate transporter, complete cds Length = 1907 Score = 113 bits (57), Expect = 4e-22 Identities = 114/133 (85%) Strand = Plus / Minus Query: 147 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 206 ||||||||| || || ||||||||||||||||| || | || |||||||||||||||| Sbjct: 1760 ctcaccacagcccgattatcttccaccagaagccgcccaccccgagccagatgatgatgt 1701 Query: 207 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 266 | ||||||||||||||||| |||||||||||||||| ||||| || ||||| || || | Sbjct: 1700 ttacaacggagatgacaaacccatagccccaccactgagccaatgggacatacccggcgc 1641 Query: 267 catagaagacggg 279 | ||||||||||| Sbjct: 1640 cgtagaagacggg 1628
>gb|AY106468.1| Zea mays PCO103506 mRNA sequence Length = 845 Score = 113 bits (57), Expect = 4e-22 Identities = 114/133 (85%) Strand = Plus / Minus Query: 147 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 206 ||||||||| || || ||||||||||||||||| || | || |||||||||||||||| Sbjct: 581 ctcaccacagcccgattatcttccaccagaagccgcccaccccgagccagatgatgatgt 522 Query: 207 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 266 | ||||||||||||||||| |||||||||||||||| ||||| || ||||| || || | Sbjct: 521 ttacaacggagatgacaaacccatagccccaccactgagccaatgggacatacccggcgc 462 Query: 267 catagaagacggg 279 | ||||||||||| Sbjct: 461 cgtagaagacggg 449
>emb|BX830891.1|CNS0A0U0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS37ZB03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1880 Score = 61.9 bits (31), Expect = 1e-06 Identities = 127/159 (79%) Strand = Plus / Minus Query: 147 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 206 |||||||||| ||||| | |||||||||| || || ||||||||||||||| |||| Sbjct: 1696 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1637 Query: 207 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 266 | || | ||||| | ||||||||||||||||| | ||||||||| || ||| |||| Sbjct: 1636 tgactattgagatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1577 Query: 267 catagaagacgggggctgaccctatgccataatgggtca 305 | ||||||| || || ||||| || ||||||||||||| Sbjct: 1576 cgtagaagataggcgcagacccgataccataatgggtca 1538
>ref|NM_121289.3| Arabidopsis thaliana oxoglutarate:malate antiporter AT5G12860 mRNA, complete cds Length = 1946 Score = 54.0 bits (27), Expect = 3e-04 Identities = 126/159 (79%) Strand = Plus / Minus Query: 147 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 206 |||||||||| ||||| | |||||||||| || || ||||||||||||||| |||| Sbjct: 1706 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1647 Query: 207 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 266 | || | || || | ||||||||||||||||| | ||||||||| || ||| |||| Sbjct: 1646 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1587 Query: 267 catagaagacgggggctgaccctatgccataatgggtca 305 | ||||||| || || ||||| || ||||||||||||| Sbjct: 1586 cgtagaagataggcgcagacccgataccataatgggtca 1548
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project) Length = 90020 Score = 54.0 bits (27), Expect = 3e-04 Identities = 126/159 (79%) Strand = Plus / Plus Query: 147 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 206 |||||||||| ||||| | |||||||||| || || ||||||||||||||| |||| Sbjct: 11743 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 11802 Query: 207 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 266 | || | || || | ||||||||||||||||| | ||||||||| || ||| |||| Sbjct: 11803 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 11862 Query: 267 catagaagacgggggctgaccctatgccataatgggtca 305 | ||||||| || || ||||| || ||||||||||||| Sbjct: 11863 cgtagaagataggcgcagacccgataccataatgggtca 11901
>gb|AF370494.1|AF370494 Arabidopsis thaliana 2-oxoglutarate/malate translocator precursor-like protein (T24H18.30) mRNA, complete cds Length = 1827 Score = 54.0 bits (27), Expect = 3e-04 Identities = 126/159 (79%) Strand = Plus / Minus Query: 147 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 206 |||||||||| ||||| | |||||||||| || || ||||||||||||||| |||| Sbjct: 1628 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1569 Query: 207 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 266 | || | || || | ||||||||||||||||| | ||||||||| || ||| |||| Sbjct: 1568 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1509 Query: 267 catagaagacgggggctgaccctatgccataatgggtca 305 | ||||||| || || ||||| || ||||||||||||| Sbjct: 1508 cgtagaagataggcgcagacccgataccataatgggtca 1470
>emb|BX831984.1|CNS0A12U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH43ZF10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 865 Score = 54.0 bits (27), Expect = 3e-04 Identities = 126/159 (79%) Strand = Plus / Minus Query: 147 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 206 |||||||||| ||||| | |||||||||| || || ||||||||||||||| |||| Sbjct: 681 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 622 Query: 207 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 266 | || | || || | ||||||||||||||||| | ||||||||| || ||| |||| Sbjct: 621 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 562 Query: 267 catagaagacgggggctgaccctatgccataatgggtca 305 | ||||||| || || ||||| || ||||||||||||| Sbjct: 561 cgtagaagataggcgcagacccgataccataatgggtca 523
>emb|BX831708.1|CNS0A15V Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH25ZB11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1833 Score = 54.0 bits (27), Expect = 3e-04 Identities = 126/159 (79%) Strand = Plus / Minus Query: 147 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 206 |||||||||| ||||| | |||||||||| || || ||||||||||||||| |||| Sbjct: 1694 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1635 Query: 207 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 266 | || | || || | ||||||||||||||||| | ||||||||| || ||| |||| Sbjct: 1634 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1575 Query: 267 catagaagacgggggctgaccctatgccataatgggtca 305 | ||||||| || || ||||| || ||||||||||||| Sbjct: 1574 cgtagaagataggcgcagacccgataccataatgggtca 1536
>emb|BX831583.1|CNS0A162 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH16ZF08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1841 Score = 54.0 bits (27), Expect = 3e-04 Identities = 126/159 (79%) Strand = Plus / Minus Query: 147 ctcaccacaaaccaatcatcttccaccagaagcctccagcaccaagccagatgatgatgt 206 |||||||||| ||||| | |||||||||| || || ||||||||||||||| |||| Sbjct: 1687 ctcaccacaagccaatgaacttccaccaggcaccacctacaccaagccagatgagaatgt 1628 Query: 207 taacaacggagatgacaaatccatagccccaccactcagccagcggaacatagcccgctc 266 | || | || || | ||||||||||||||||| | ||||||||| || ||| |||| Sbjct: 1627 tgactattgaaatcaggaatccatagccccaccatttagccagcggcacgtagttagctc 1568 Query: 267 catagaagacgggggctgaccctatgccataatgggtca 305 | ||||||| || || ||||| || ||||||||||||| Sbjct: 1567 cgtagaagataggcgcagacccgataccataatgggtca 1529
>emb|BX831893.1|CNS0A11L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH37ZF03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1842 Score = 52.0 bits (26), Expect = 0.001 Identities = 68/82 (82%) Strand = Plus / Minus Query: 224 aatccatagccccaccactcagccagcggaacatagcccgctccatagaagacgggggct 283 ||||||||||||||||| | ||||||||| || ||| ||||| ||||||| || || Sbjct: 1669 aatccatagccccaccatttagccagcggcacgtagttagctccgtagaagataggcgca 1610 Query: 284 gaccctatgccataatgggtca 305 ||||| || ||||||||||||| Sbjct: 1609 gacccgataccataatgggtca 1588
>emb|BX833869.1|CNS0A0DK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL80ZD02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 769 Score = 52.0 bits (26), Expect = 0.001 Identities = 68/82 (82%) Strand = Plus / Minus Query: 224 aatccatagccccaccactcagccagcggaacatagcccgctccatagaagacgggggct 283 ||||||||||||||||| | ||||||||| || ||| ||||| ||||||| || || Sbjct: 452 aatccatagccccaccatttagccagcggcacgtagttagctccgtagaagataggcgca 393 Query: 284 gaccctatgccataatgggtca 305 ||||| || ||||||||||||| Sbjct: 392 gacccgataccataatgggtca 371
>gb|AY279308.1| Malus x domestica oxoglutarate/malate translocator-like mRNA, partial sequence Length = 419 Score = 44.1 bits (22), Expect = 0.29 Identities = 46/54 (85%) Strand = Plus / Minus Query: 266 ccatagaagacgggggctgaccctatgccataatgggtcaggccacccatgagg 319 |||||||| || || ||||| || ||||| |||||||| || |||||||||||| Sbjct: 98 ccatagaaaacaggtgctgatccaatgccgtaatgggtaagaccacccatgagg 45
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 196 gatgatgatgttaacaacggag 217 |||||||||||||||||||||| Sbjct: 5575716 gatgatgatgttaacaacggag 5575695
>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0081K20 Length = 117287 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 196 gatgatgatgttaacaacggag 217 |||||||||||||||||||||| Sbjct: 88801 gatgatgatgttaacaacggag 88780
>dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0431A02 Length = 165038 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 196 gatgatgatgttaacaacggag 217 |||||||||||||||||||||| Sbjct: 37408 gatgatgatgttaacaacggag 37387
>gb|AC110607.7| Homo sapiens chromosome 15, clone CTD-2632K10, complete sequence Length = 160452 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 agccccaccactcagccagcg 251 ||||||||||||||||||||| Sbjct: 12214 agccccaccactcagccagcg 12194
>gb|AC092891.5| Homo sapiens 12 BAC RP11-495C19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109440 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 151 ccacaaaccaatcatcttccaccag 175 |||||| |||||||||||||||||| Sbjct: 83801 ccacaatccaatcatcttccaccag 83777
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 107 cgccctcgtcgaaataggaagtcc 130 ||||||||||||||||||| |||| Sbjct: 1443551 cgccctcgtcgaaataggacgtcc 1443528
>emb|BX897725.7| Zebrafish DNA sequence from clone CH211-244P18 in linkage group 20 Contains the gene for a novel protein similar to vertebrate delta-like 4 (Drosophila) (DLL4), the vps18 gene for vacuolar protein sorting protein 18, the gene for a novel protein containing an SNF2 family N-terminal domain and a Helicase conserved C-terminal domain, the gene for a novel protein similar to vertebrate ras homolog gene family, member V (RHOV), the gene for a novel protein containing a ChaC-like protein domain and three CpG islands, complete sequence Length = 170125 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccacttgcaaatgttttgct 97 |||||||||||||||||||| Sbjct: 153015 ccacttgcaaatgttttgct 153034
>gb|AC006499.13|AC006499 Homo sapiens chromosome 4 clone C0494H11, complete sequence Length = 195384 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cagaagcctccagcaccaag 192 |||||||||||||||||||| Sbjct: 26195 cagaagcctccagcaccaag 26214
>emb|AL929049.4| Zebrafish DNA sequence from clone DKEY-14A13 in linkage group 20, complete sequence Length = 223182 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ccacttgcaaatgttttgct 97 |||||||||||||||||||| Sbjct: 160254 ccacttgcaaatgttttgct 160273
>emb|AL672148.8| Mouse DNA sequence from clone RP23-369O15 on chromosome X, complete sequence Length = 130107 Score = 40.1 bits (20), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 25 acaaactaaaagaatggatntgt 47 ||||||||||||||||||| ||| Sbjct: 123012 acaaactaaaagaatggatgtgt 122990 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,456,044 Number of Sequences: 3902068 Number of extensions: 2456044 Number of successful extensions: 42991 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42906 Number of HSP's gapped (non-prelim): 84 length of query: 338 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 316 effective length of database: 17,147,199,772 effective search space: 5418515127952 effective search space used: 5418515127952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)