ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017011.1| Zea mays clone EK07D2310H07.c mRNA sequence 186 5e-44
2gb|AY112167.1| Zea mays CL15172_1 mRNA sequence 186 5e-44
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 68 3e-08
4gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare str... 68 3e-08
5gb|AC097627.1| Genomic sequence for Oryza sativa, Nipponbare str... 68 3e-08
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
7gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence 68 3e-08
8dbj|AK069374.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
9dbj|AK061143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
10ref|NM_197745.1| Oryza sativa (japonica cultivar-group) putative... 50 0.008
11gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 gen... 50 0.008
12gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 gen... 50 0.008
13dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
14dbj|AK110882.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.008
15gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.008
16emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 46 0.12
17ref|NM_001031354.1| Gallus gallus nicalin homolog (zebrafish) (N... 42 1.8
18gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 42 1.8
19emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 1.8
20emb|AL713915.10| Mouse DNA sequence from clone RP23-437C4 on chr... 42 1.8
21emb|AJ720462.1| Gallus gallus mRNA for hypothetical protein, clo... 42 1.8
22gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 42 1.8
23gb|AC153939.3| Mus musculus 10 BAC RP24-173I5 (Roswell Park Canc... 42 1.8
24gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.8
25dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.8
26dbj|D15073.1|XANHEMA Xanthomonas campestris pv. phaseoli hemA ge... 42 1.8
27gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.8
28gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.8
29gb|AC152980.2| Mus musculus 10 BAC RP23-462F3 (Roswell Park Canc... 42 1.8
30gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 7.2
31gb|DQ211890.1| Planotortrix notophaea actin gene, partial cds 40 7.2
32gb|DQ211889.1| Planotortrix octo actin gene, partial cds 40 7.2
33gb|DQ211888.1| Planotortrix excessana actin gene, partial cds 40 7.2
34gb|DQ211887.1| Ctenopseustis obliquana actin gene, partial cds 40 7.2
35gb|DQ211886.1| Ctenopseustis herana actin gene, partial cds 40 7.2
36gb|AY540995.1| Achromobacter xylosoxidans subsp. denitrificans s... 40 7.2
37gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial ... 40 7.2
38gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 7.2
39gb|AC124181.3| Mus musculus BAC clone RP23-204B12 from chromosom... 40 7.2
40gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole b... 40 7.2
41gb|AC113110.17| Mus musculus chromosome 16, clone RP23-328A9, co... 40 7.2
42ref|XM_754931.1| Ustilago maydis 521 hypothetical protein (UM038... 40 7.2
43gb|AC148448.3| Pan troglodytes chromosome X clone PTB-007I07 map... 40 7.2
44emb|AL138826.15| Human DNA sequence from clone RP11-156F16 on ch... 40 7.2
45emb|AL109801.14|HSJ738A13 Human DNA sequence from clone RP4-738A... 40 7.2
46emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 40 7.2
47emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 40 7.2
48emb|AJ519536.1|MSE519536 Manduca sexta mRNA for non-muscle actin... 40 7.2
49gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 7.2
50dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
51dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
52gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 7.2
53gb|AC092758.3| Papio anubis clone RP41-22J16, complete sequence 40 7.2
54gb|AC073525.25| Homo sapiens 12 BAC RP11-81K13 (Roswell Park Can... 40 7.2
55dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
56dbj|AP003988.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
57dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
58emb|BX000474.13| Mouse DNA sequence from clone RP24-80C21 on chr... 40 7.2
59gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.2
60emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC... 40 7.2
61gb|DQ065837.1| Burkholderia cepacia strain 2a plasmid pIJB1, com... 40 7.2 
>gb|BT017011.1| Zea mays clone EK07D2310H07.c mRNA sequence
          Length = 1147

 Score =  186 bits (94), Expect = 5e-44
 Identities = 217/258 (84%)
 Strand = Plus / Minus

                                                                       
Query: 268 gtgcagcaccccgttggccacgttggcaaacacctcgcccgccgcctccagcagctcgtc 327
           ||||||||||||||| || || ||||||||||||||||| || | |||||||||||| ||
Sbjct: 940 gtgcagcaccccgttagcgacattggcaaacacctcgccggctgactccagcagctcatc 881

                                                                       
Query: 328 gcgggtgcccgtgtagtgcatcatgctcggcctcgtcaggaacagcgacttggacgccag 387
            |||||  | ||||| ||||| | ||| || |  || |||||||  |||||||| |||||
Sbjct: 880 acgggtagcagtgtaatgcatgaggctaggacgagtgaggaacaaggacttggaagccag 821

                                                                       
Query: 388 gtcgcccatggagatcgggtcgggcgagcccgaggactgcccgaacgacaccaggaaacc 447
           ||||| | | | ||| ||||| ||   ||| || |||||||| |||||||||||||| ||
Sbjct: 820 gtcgctcgttgggattgggtcaggtttgcctgacgactgcccaaacgacaccaggaagcc 761

                                                                       
Query: 448 gcggggcgccaggcactccagggatgccttgtatgtgtcctttccaacagaatcatagac 507
           ||||| ||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 760 gcgggacgccaagcactccagggaagccttgtatgtatcctttccaacagaatcatagac 701

                             
Query: 508 cacatttacaccttttcc 525
            ||||| |||||||||||
Sbjct: 700 gacattgacaccttttcc 683
to top
>gb|AY112167.1| Zea mays CL15172_1 mRNA sequence
          Length = 996

 Score =  186 bits (94), Expect = 5e-44
 Identities = 217/258 (84%)
 Strand = Plus / Plus

                                                                       
Query: 268 gtgcagcaccccgttggccacgttggcaaacacctcgcccgccgcctccagcagctcgtc 327
           ||||||||||||||| || || ||||||||||||||||| || | |||||||||||| ||
Sbjct: 613 gtgcagcaccccgttagcgacattggcaaacacctcgccggctgactccagcagctcatc 672

                                                                       
Query: 328 gcgggtgcccgtgtagtgcatcatgctcggcctcgtcaggaacagcgacttggacgccag 387
            |||||  | ||||| ||||| | ||| || |  || |||||||  |||||||| |||||
Sbjct: 673 acgggtagcagtgtaatgcatgaggctaggacgagtgaggaacaaggacttggaagccag 732

                                                                       
Query: 388 gtcgcccatggagatcgggtcgggcgagcccgaggactgcccgaacgacaccaggaaacc 447
           ||||| | | | ||| ||||| ||   ||| || |||||||| |||||||||||||| ||
Sbjct: 733 gtcgctcgttgggattgggtcaggtttgcctgacgactgcccaaacgacaccaggaagcc 792

                                                                       
Query: 448 gcggggcgccaggcactccagggatgccttgtatgtgtcctttccaacagaatcatagac 507
           ||||| ||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 793 gcgggacgccaagcactccagggaagccttgtatgtatcctttccaacagaatcatagac 852

                             
Query: 508 cacatttacaccttttcc 525
            ||||| |||||||||||
Sbjct: 853 gacattgacaccttttcc 870
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                        
Query: 474    ccttgtatgtgtcctttccaacagaatcatagaccacatttacaccttttccacctgt 531
              |||||||||| ||||| |||||||||||||| |||||||| |||||||| ||| ||||
Sbjct: 102273 ccttgtatgtatccttgccaacagaatcatataccacattgacacctttcccagctgt 102330



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                          
Query: 290    ttggcaaacacctcgcccgccgcctccagcagctcgtcgcgggtgcccgtgtagtgcatc 349
              |||||||||||||| || |||| |||||||| ||||||||||||  | ||||| ||||||
Sbjct: 101714 ttggcaaacacctcaccggccgactccagcaactcgtcgcgggtagcagtgtaatgcatc 101773

                                            
Query: 350    atgctcggcctcgtcaggaacagcgacttg 379
              | ||| ||||| || |  ||||||||||||
Sbjct: 101774 aggctgggccttgttaccaacagcgacttg 101803
to top
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAb0079B22, from chromosome 3, complete sequence
          Length = 156933

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                       
Query: 474   ccttgtatgtgtcctttccaacagaatcatagaccacatttacaccttttccacctgt 531
             |||||||||| ||||| |||||||||||||| |||||||| |||||||| ||| ||||
Sbjct: 36273 ccttgtatgtatccttgccaacagaatcatataccacattgacacctttcccagctgt 36330



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                         
Query: 290   ttggcaaacacctcgcccgccgcctccagcagctcgtcgcgggtgcccgtgtagtgcatc 349
             |||||||||||||| || |||| |||||||| ||||||||||||  | ||||| ||||||
Sbjct: 35714 ttggcaaacacctcaccggccgactccagcaactcgtcgcgggtagcagtgtaatgcatc 35773

                                           
Query: 350   atgctcggcctcgtcaggaacagcgacttg 379
             | ||| ||||| || |  ||||||||||||
Sbjct: 35774 aggctgggccttgttaccaacagcgacttg 35803
to top
>gb|AC097627.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0079B22, from chromosome 3, complete sequence
          Length = 125217

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                         
Query: 290   ttggcaaacacctcgcccgccgcctccagcagctcgtcgcgggtgcccgtgtagtgcatc 349
             |||||||||||||| || |||| |||||||| ||||||||||||  | ||||| ||||||
Sbjct: 23504 ttggcaaacacctcaccggccgactccagcaactcgtcgcgggtagcagtgtaatgcatc 23445

                                           
Query: 350   atgctcggcctcgtcaggaacagcgacttg 379
             | ||| ||||| || |  ||||||||||||
Sbjct: 23444 aggctgggccttgttaccaacagcgacttg 23415



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                       
Query: 474   ccttgtatgtgtcctttccaacagaatcatagaccacatttacaccttttccacctgt 531
             |||||||||| ||||| |||||||||||||| |||||||| |||||||| ||| ||||
Sbjct: 22945 ccttgtatgtatccttgccaacagaatcatataccacattgacacctttcccagctgt 22888
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                        
Query: 474    ccttgtatgtgtcctttccaacagaatcatagaccacatttacaccttttccacctgt 531
              |||||||||| ||||| |||||||||||||| |||||||| |||||||| ||| ||||
Sbjct: 102273 ccttgtatgtatccttgccaacagaatcatataccacattgacacctttcccagctgt 102330



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                          
Query: 290    ttggcaaacacctcgcccgccgcctccagcagctcgtcgcgggtgcccgtgtagtgcatc 349
              |||||||||||||| || |||| |||||||| ||||||||||||  | ||||| ||||||
Sbjct: 101714 ttggcaaacacctcaccggccgactccagcaactcgtcgcgggtagcagtgtaatgcatc 101773

                                            
Query: 350    atgctcggcctcgtcaggaacagcgacttg 379
              | ||| ||||| || |  ||||||||||||
Sbjct: 101774 aggctgggccttgttaccaacagcgacttg 101803
to top
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence
          Length = 162241

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                          
Query: 290    ttggcaaacacctcgcccgccgcctccagcagctcgtcgcgggtgcccgtgtagtgcatc 349
              |||||||||||||| || |||| |||||||| ||||||||||||  | ||||| ||||||
Sbjct: 160854 ttggcaaacacctcaccggccgactccagcaactcgtcgcgggtagcagtgtaatgcatc 160795

                                            
Query: 350    atgctcggcctcgtcaggaacagcgacttg 379
              | ||| ||||| || |  ||||||||||||
Sbjct: 160794 aggctgggccttgttaccaacagcgacttg 160765



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                        
Query: 474    ccttgtatgtgtcctttccaacagaatcatagaccacatttacaccttttccacctgt 531
              |||||||||| ||||| |||||||||||||| |||||||| |||||||| ||| ||||
Sbjct: 160295 ccttgtatgtatccttgccaacagaatcatataccacattgacacctttcccagctgt 160238
to top
>dbj|AK069374.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012O14, full
           insert sequence
          Length = 1280

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 474 ccttgtatgtgtcctttccaacagaatcatagaccacatttacaccttttccacctgt 531
           |||||||||| ||||| |||||||||||||| |||||||| |||||||| ||| ||||
Sbjct: 720 ccttgtatgtatccttgccaacagaatcatataccacattgacacctttcccagctgt 663



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                       
Query: 290 ttggcaaacacctcgcccgccgcctccagcagctcgtcgcgggtgcccgtgtagtgcatc 349
           |||||||||||||| || |||| |||||||| ||||||||||||  | | ||| ||||||
Sbjct: 904 ttggcaaacacctcaccggccgactccagcaactcgtcgcgggtagcagcgtaatgcatc 845

                                         
Query: 350 atgctcggcctcgtcaggaacagcgacttg 379
           | ||| ||||| || |  ||||||||||||
Sbjct: 844 aggctgggccttgttaccaacagcgacttg 815
to top
>dbj|AK061143.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C09, full
           insert sequence
          Length = 1172

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                       
Query: 290 ttggcaaacacctcgcccgccgcctccagcagctcgtcgcgggtgcccgtgtagtgcatc 349
           |||||||||||||| || |||| |||||||| ||||||||||||  | ||||| ||||||
Sbjct: 909 ttggcaaacacctcaccggccgactccagcaactcgtcgcgggtagcagtgtaatgcatc 850

                                         
Query: 350 atgctcggcctcgtcaggaacagcgacttg 379
           | ||| ||||| || |  ||||||||||||
Sbjct: 849 aggctgggccttgttaccaacagcgacttg 820



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 474 ccttgtatgtgtcctttccaacagaatcatagaccacatttacaccttttccacctgt 531
           |||||||||| ||||| |||||||||||||| |||||||| |||||||| ||| ||||
Sbjct: 725 ccttgtatgtatccttgccaacagaatcatataccacattgacacctttcccagctgt 668
to top
>ref|NM_197745.1| Oryza sativa (japonica cultivar-group) putative quinone
           oxidoreductase (OSJNBa0042H09.11), mRNA
          Length = 1014

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                       
Query: 299 acctcgcccgccgcctccagcagctcgtcgcgggtgcccgtgtagtgcatcatgctcggc 358
           |||||||| || || | ||||||||||||||||||| | ||||||||| |||| |  |||
Sbjct: 863 acctcgccggcggcgtgcagcagctcgtcgcgggtggcggtgtagtgcctcatccctggc 804

                                        
Query: 359 ctcgtcaggaacagcgacttggacgccag 387
           ||   || || ||| ||||||||||||||
Sbjct: 803 ctgcccaagatcagggacttggacgccag 775
to top
>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence,
            complete sequence
          Length = 144191

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 73/89 (82%)
 Strand = Plus / Plus

                                                                        
Query: 299  acctcgcccgccgcctccagcagctcgtcgcgggtgcccgtgtagtgcatcatgctcggc 358
            |||||||| || || | ||||||||||||||||||| | ||||||||| |||| |  |||
Sbjct: 9868 acctcgccggcggcgtgcagcagctcgtcgcgggtggcggtgtagtgcctcatccctggc 9927

                                         
Query: 359  ctcgtcaggaacagcgacttggacgccag 387
            ||   || || ||| ||||||||||||||
Sbjct: 9928 ctgcccaagatcagggacttggacgccag 9956
to top
>gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete
             sequence
          Length = 132927

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                         
Query: 299   acctcgcccgccgcctccagcagctcgtcgcgggtgcccgtgtagtgcatcatgctcggc 358
             |||||||| || || | ||||||||||||||||||| | ||||||||| |||| |  |||
Sbjct: 32093 acctcgccggcggcgtgcagcagctcgtcgcgggtggcggtgtagtgcctcatccctggc 32034

                                          
Query: 359   ctcgtcaggaacagcgacttggacgccag 387
             ||   || || ||| ||||||||||||||
Sbjct: 32033 ctgcccaagatcagggacttggacgccag 32005
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                            
Query: 299      acctcgcccgccgcctccagcagctcgtcgcgggtgcccgtgtagtgcatcatgctcggc 358
                |||||||| || || | ||||||||||||||||||| | ||||||||| |||| |  |||
Sbjct: 21600189 acctcgccggcggcgtgcagcagctcgtcgcgggtggcggtgtagtgcctcatccctggc 21600130

                                             
Query: 359      ctcgtcaggaacagcgacttggacgccag 387
                ||   || || ||| ||||||||||||||
Sbjct: 21600129 ctgcccaagatcagggacttggacgccag 21600101
to top
>dbj|AK110882.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-G10, full
            insert sequence
          Length = 1832

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                        
Query: 299  acctcgcccgccgcctccagcagctcgtcgcgggtgcccgtgtagtgcatcatgctcggc 358
            |||||||| || || | ||||||||||||||||||| | ||||||||| |||| |  |||
Sbjct: 1379 acctcgccggcggcgtgcagcagctcgtcgcgggtggcggtgtagtgcctcatccctggc 1320

                                         
Query: 359  ctcgtcaggaacagcgacttggacgccag 387
            ||   || || ||| ||||||||||||||
Sbjct: 1319 ctgcccaagatcagggacttggacgccag 1291
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                            
Query: 299      acctcgcccgccgcctccagcagctcgtcgcgggtgcccgtgtagtgcatcatgctcggc 358
                |||||||| || || | ||||||||||||||||||| | ||||||||| |||| |  |||
Sbjct: 21611852 acctcgccggcggcgtgcagcagctcgtcgcgggtggcggtgtagtgcctcatccctggc 21611793

                                             
Query: 359      ctcgtcaggaacagcgacttggacgccag 387
                ||   || || ||| ||||||||||||||
Sbjct: 21611792 ctgcccaagatcagggacttggacgccag 21611764
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 300     cctcgcccgccgcctccagcagc 322
               |||||||||||||||||||||||
Sbjct: 4938237 cctcgcccgccgcctccagcagc 4938259
to top
>ref|NM_001031354.1| Gallus gallus nicalin homolog (zebrafish) (NCLN), mRNA
          Length = 2928

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 296 aacacctcgcccgccgcctccagca 320
           ||||||||||||||| |||||||||
Sbjct: 79  aacacctcgcccgcctcctccagca 55
to top
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 309    ccgcctccagcagctcgtcgcgggtgccc 337
              ||||| |||||||||||||| ||||||||
Sbjct: 702474 ccgccaccagcagctcgtcgtgggtgccc 702446
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 315     ccagcagctcgtcgcgggtgc 335
               |||||||||||||||||||||
Sbjct: 1106318 ccagcagctcgtcgcgggtgc 1106338
to top
>emb|AL713915.10| Mouse DNA sequence from clone RP23-437C4 on chromosome 11 Contains part
              of the Odz2 gene for odd Oz/ten-m homolog 2 (Drosophila),
              complete sequence
          Length = 201133

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 450    ggggcgccaggcactccagggatgc 474
              ||||| |||||||||||||||||||
Sbjct: 192385 ggggcaccaggcactccagggatgc 192409
to top
>emb|AJ720462.1| Gallus gallus mRNA for hypothetical protein, clone 18d18
          Length = 2928

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 296 aacacctcgcccgccgcctccagca 320
           ||||||||||||||| |||||||||
Sbjct: 79  aacacctcgcccgcctcctccagca 55
to top
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 289    gttggcaaacacctcgcccgccgcc 313
              |||||||||| ||||||||||||||
Sbjct: 386806 gttggcaaactcctcgcccgccgcc 386830
to top
>gb|AC153939.3| Mus musculus 10 BAC RP24-173I5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 145018

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 89     tgtggattgtagagcacaaac 109
              |||||||||||||||||||||
Sbjct: 125066 tgtggattgtagagcacaaac 125086
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 307     cgccgcctccagcagctcgtcgcgg 331
               |||||||||||||| ||||||||||
Sbjct: 4611889 cgccgcctccagcacctcgtcgcgg 4611865
to top
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 188     gaccccgaggtcttccgggcc 208
               |||||||||||||||||||||
Sbjct: 1363152 gaccccgaggtcttccgggcc 1363132
to top
>dbj|D15073.1|XANHEMA Xanthomonas campestris pv. phaseoli hemA gene for glutamyl-tRNA
            reductase, complete cds
          Length = 1549

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 315  ccagcagctcgtcgcgggtgc 335
            |||||||||||||||||||||
Sbjct: 1268 ccagcagctcgtcgcgggtgc 1248
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 310     cgcctccagcagctcgtcgcgggtg 334
               ||||||||||||||| |||||||||
Sbjct: 3723564 cgcctccagcagctcctcgcgggtg 3723588



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 303     cgcccgccgcctccagcagc 322
               ||||||||||||||||||||
Sbjct: 1521881 cgcccgccgcctccagcagc 1521862
to top
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 188     gaccccgaggtcttccgggcc 208
               |||||||||||||||||||||
Sbjct: 1039588 gaccccgaggtcttccgggcc 1039568
to top
>gb|AC152980.2| Mus musculus 10 BAC RP23-462F3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 165602

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 89     tgtggattgtagagcacaaac 109
              |||||||||||||||||||||
Sbjct: 130961 tgtggattgtagagcacaaac 130941
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 298     cacctcgcccgccgcctcca 317
               ||||||||||||||||||||
Sbjct: 2718068 cacctcgcccgccgcctcca 2718087
to top
>gb|DQ211890.1| Planotortrix notophaea actin gene, partial cds
          Length = 965

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 ccgccgcctccagcagctcg 325
           ||||||||||||||||||||
Sbjct: 623 ccgccgcctccagcagctcg 642
to top
>gb|DQ211889.1| Planotortrix octo actin gene, partial cds
          Length = 962

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 ccgccgcctccagcagctcg 325
           ||||||||||||||||||||
Sbjct: 620 ccgccgcctccagcagctcg 639
to top
>gb|DQ211888.1| Planotortrix excessana actin gene, partial cds
          Length = 965

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 ccgccgcctccagcagctcg 325
           ||||||||||||||||||||
Sbjct: 623 ccgccgcctccagcagctcg 642
to top
>gb|DQ211887.1| Ctenopseustis obliquana actin gene, partial cds
          Length = 958

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 ccgccgcctccagcagctcg 325
           ||||||||||||||||||||
Sbjct: 623 ccgccgcctccagcagctcg 642
to top
>gb|DQ211886.1| Ctenopseustis herana actin gene, partial cds
          Length = 964

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 ccgccgcctccagcagctcg 325
           ||||||||||||||||||||
Sbjct: 622 ccgccgcctccagcagctcg 641
to top
>gb|AY540995.1| Achromobacter xylosoxidans subsp. denitrificans strain EST4002 plasmid
             pEST4011, complete sequence
          Length = 76958

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   gccgcctccagcagctcgtc 327
             ||||||||||||||||||||
Sbjct: 72235 gccgcctccagcagctcgtc 72254
to top
>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence
          Length = 114045

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   tgtgcagcaccccgttggcc 286
             ||||||||||||||||||||
Sbjct: 94142 tgtgcagcaccccgttggcc 94161
to top
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 265     ggtgtgcagcaccccgttggccacgttg 292
               ||||||||||||| ||||||| ||||||
Sbjct: 5382285 ggtgtgcagcaccacgttggcgacgttg 5382312
to top
>gb|AC124181.3| Mus musculus BAC clone RP23-204B12 from chromosome 18, complete
             sequence
          Length = 220244

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    agatgcaactccaactcctg 70
             ||||||||||||||||||||
Sbjct: 93053 agatgcaactccaactcctg 93072
to top
>gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole biosynthesis gene
             cluster, complete sequence
          Length = 84868

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   ccgccgcctccagcagctcg 325
             ||||||||||||||||||||
Sbjct: 43145 ccgccgcctccagcagctcg 43164
to top
>gb|AC113110.17| Mus musculus chromosome 16, clone RP23-328A9, complete sequence
          Length = 240173

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     cagacagataagaggaatag 45
              ||||||||||||||||||||
Sbjct: 102278 cagacagataagaggaatag 102297
to top
>ref|XM_754931.1| Ustilago maydis 521 hypothetical protein (UM03877.1) partial mRNA
          Length = 3063

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  cgccgcctccagcagctcgt 326
            ||||||||||||||||||||
Sbjct: 2228 cgccgcctccagcagctcgt 2247
to top
>gb|AC148448.3| Pan troglodytes chromosome X clone PTB-007I07 map human ortholog
            q22.1, complete sequence
          Length = 44375

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   agacagacagataagaggaa 42
            ||||||||||||||||||||
Sbjct: 4142 agacagacagataagaggaa 4123
to top
>emb|AL138826.15| Human DNA sequence from clone RP11-156F16 on chromosome 6p11.1-12.3,
            complete sequence
          Length = 62464

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  tttattccttcttctcctac 145
            ||||||||||||||||||||
Sbjct: 7943 tttattccttcttctcctac 7924
to top
>emb|AL109801.14|HSJ738A13 Human DNA sequence from clone RP4-738A13 on chromosome Xq21.31-22.1
             Contains the 5' end of the TAF7L gene for TAF7-like RNA
             polymerase II 50kDa TATA box binding protein
             (TBP)-associated factor and a CpG island, complete
             sequence
          Length = 46775

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    agacagacagataagaggaa 42
             ||||||||||||||||||||
Sbjct: 39988 agacagacagataagaggaa 39969
to top
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 50     cagatgcaactccaactcctgcca 73
              ||||||||||| ||||||||||||
Sbjct: 214793 cagatgcaacttcaactcctgcca 214816
to top
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    acctcgcccgccgcctccag 318
              ||||||||||||||||||||
Sbjct: 201653 acctcgcccgccgcctccag 201634
to top
>emb|AJ519536.1|MSE519536 Manduca sexta mRNA for non-muscle actin (act3 gene)
          Length = 1466

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 ccgccgcctccagcagctcg 325
           ||||||||||||||||||||
Sbjct: 760 ccgccgcctccagcagctcg 779
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 265     ggtgtgcagcaccccgttggccacgttg 292
               ||||||||| ||| ||||||||||||||
Sbjct: 5997977 ggtgtgcagtaccacgttggccacgttg 5998004
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 73       aacatatttacatgcatgtg 92
                ||||||||||||||||||||
Sbjct: 27564218 aacatatttacatgcatgtg 27564237
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 73       aacatatttacatgcatgtg 92
                ||||||||||||||||||||
Sbjct: 11103922 aacatatttacatgcatgtg 11103903
to top
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 301     ctcgcccgccgcctccagca 320
               ||||||||||||||||||||
Sbjct: 1726026 ctcgcccgccgcctccagca 1726045
to top
>gb|AC092758.3| Papio anubis clone RP41-22J16, complete sequence
          Length = 171690

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    agacagacagataagaggaa 42
             ||||||||||||||||||||
Sbjct: 61567 agacagacagataagaggaa 61586
to top
>gb|AC073525.25| Homo sapiens 12 BAC RP11-81K13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 142475

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 496    agaatcatagaccacattta 515
              ||||||||||||||||||||
Sbjct: 115302 agaatcatagaccacattta 115283
to top
>dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1124_E11
          Length = 133524

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    aacatatttacatgcatgtg 92
             ||||||||||||||||||||
Sbjct: 86616 aacatatttacatgcatgtg 86597
to top
>dbj|AP003988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1057_D08
          Length = 119557

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    aacatatttacatgcatgtg 92
             ||||||||||||||||||||
Sbjct: 23101 aacatatttacatgcatgtg 23082
to top
>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1479_B11
          Length = 105702

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    aacatatttacatgcatgtg 92
             ||||||||||||||||||||
Sbjct: 46508 aacatatttacatgcatgtg 46527
to top
>emb|BX000474.13| Mouse DNA sequence from clone RP24-80C21 on chromosome 2, complete
              sequence
          Length = 205184

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 457    caggcactccagggatgcct 476
              ||||||||||||||||||||
Sbjct: 166812 caggcactccagggatgcct 166831
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 73      aacatatttacatgcatgtg 92
               ||||||||||||||||||||
Sbjct: 5055272 aacatatttacatgcatgtg 5055253
to top
>emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC gene, disD gene, ORF1,
             ORF2, ORF3, ORF4, ORF5, ORF6, ORF7, ORF8, ORF9, ORF10,
             ORF11, ORF12, ORF13, ORF14, ORF15, ORF16, ORF17, ORF18 and
             ORF19
          Length = 86080

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   ccgccgcctccagcagctcg 325
             ||||||||||||||||||||
Sbjct: 43063 ccgccgcctccagcagctcg 43082
to top
>gb|DQ065837.1| Burkholderia cepacia strain 2a plasmid pIJB1, complete sequence
          Length = 99448

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   gccgcctccagcagctcgtc 327
             ||||||||||||||||||||
Sbjct: 44079 gccgcctccagcagctcgtc 44098


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,322,152
Number of Sequences: 3902068
Number of extensions: 4322152
Number of successful extensions: 81357
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80196
Number of HSP's gapped (non-prelim): 1159
length of query: 535
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 512
effective length of database: 17,143,297,704
effective search space: 8777368424448
effective search space used: 8777368424448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top