ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_472910.1| Oryza sativa (japonica cultivar-group), predic... 190 4e-45
2emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4,... 190 4e-45
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
4emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 190 4e-45
5ref|XM_472909.1| Oryza sativa (japonica cultivar-group), predic... 121 3e-24
6dbj|AK109889.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 3e-24
7ref|XM_472911.1| Oryza sativa (japonica cultivar-group), predic... 46 0.14
8dbj|AK119297.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
9ref|NM_001016221.2| Xenopus tropicalis hypothetical protein LOC5... 42 2.2
10gb|AC158384.2| Mus musculus BAC clone RP24-97I24 from chromosome... 42 2.2
11gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome... 42 2.2
12emb|CR926305.2| Xenopus tropicalis finished cDNA, clone TEgg078c13 42 2.2
13gb|AC004829.2| Homo sapiens PAC clone RP4-530J23 from 7, complet... 40 8.6
14gb|AC146161.2| Pan troglodytes BAC clone RP43-1G6 from 7, comple... 40 8.6
15gb|AC145091.1| Pan troglodytes BAC clone RP43-12F8 from 7, compl... 40 8.6
16emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chr... 40 8.6
17emb|AL021879.3|HS209B9 Human DNA sequence from clone RP1-209B9 o... 40 8.6
18emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in... 40 8.6
19gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Ca... 40 8.6
20gb|AF275265.3|AF275265 Mus musculus receptor protein tyrosine ph... 40 8.6
21gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosom... 40 8.6
22gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosom... 40 8.6
23emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 i... 40 8.6
24gb|BC089118.1| Xenopus laevis mis5p, mRNA (cDNA clone MGC:85070 ... 40 8.6
25gb|U44050.1|XLU44050 Xenopus laevis mis5 mRNA, complete cds 40 8.6
26emb|AL591586.8| Mouse DNA sequence from clone RP23-126L18 on chr... 40 8.6

>ref|XM_472910.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1653

 Score =  190 bits (96), Expect = 4e-45
 Identities = 258/312 (82%)
 Strand = Plus / Minus

                                                                        
Query: 300  atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359
            |||||| ||||||||||||||||||||| | |||  |||||||| |||| ||||||||||
Sbjct: 1576 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 1517

                                                                        
Query: 360  attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419
            |  |||  |||||||||| ||| |||||    ||||||| ||| ||||| || ||||| |
Sbjct: 1516 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 1457

                                                                        
Query: 420  tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479
            | |||||||| | ||||||||||||||||||||  ||||||||||||||||| |||| ||
Sbjct: 1456 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 1397

                                                                        
Query: 480  atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539
            ||||||||||  | ||||| |||| |||| | ||||| ||||||||| |||  |||||||
Sbjct: 1396 atttgctgcaatcggtcccaagctgtgcattctcaccgacagacttgacctggaggcatt 1337

                                                                        
Query: 540  gcccagtttgtttcagcacaagctcatacgtggaggtgtagttccaagcgttcgattcat 599
            | ||||| |||| ||| || | ||| |  || || ||||||||||||||||| |||||||
Sbjct: 1336 gaccagtgtgttgcagtaccaactcgtgtgttgatgtgtagttccaagcgtttgattcat 1277

                        
Query: 600  cgcacggaccca 611
            | || |||||||
Sbjct: 1276 cacatggaccca 1265



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>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17,
             complete sequence
          Length = 129498

 Score =  190 bits (96), Expect = 4e-45
 Identities = 258/312 (82%)
 Strand = Plus / Minus

                                                                         
Query: 300   atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359
             |||||| ||||||||||||||||||||| | |||  |||||||| |||| ||||||||||
Sbjct: 35648 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 35589

                                                                         
Query: 360   attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419
             |  |||  |||||||||| ||| |||||    ||||||| ||| ||||| || ||||| |
Sbjct: 35588 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 35529

                                                                         
Query: 420   tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479
             | |||||||| | ||||||||||||||||||||  ||||||||||||||||| |||| ||
Sbjct: 35528 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 35469

                                                                         
Query: 480   atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539
             ||||||||||  | ||||| |||| |||| | ||||| ||||||||| |||  |||||||
Sbjct: 35468 atttgctgcaatcggtcccaagctgtgcattctcaccgacagacttgacctggaggcatt 35409

                                                                         
Query: 540   gcccagtttgtttcagcacaagctcatacgtggaggtgtagttccaagcgttcgattcat 599
             | ||||| |||| ||| || | ||| |  || || ||||||||||||||||| |||||||
Sbjct: 35408 gaccagtgtgttgcagtaccaactcgtgtgttgatgtgtagttccaagcgtttgattcat 35349

                         
Query: 600   cgcacggaccca 611
             | || |||||||
Sbjct: 35348 cacatggaccca 35337



 Score =  121 bits (61), Expect = 3e-24
 Identities = 205/253 (81%)
 Strand = Plus / Minus

                                                                         
Query: 300   atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359
             |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 30773 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 30714

                                                                         
Query: 360   attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419
             | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 30713 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 30654

                                                                         
Query: 420   tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479
             |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 30653 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 30594

                                                                         
Query: 480   atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539
             |||||||||| |  || || ||||||||| | ||||| |||||||| ||||  |||||||
Sbjct: 30593 atttgctgcaactggtgccaagctttgcattctcaccaacagacttcgcctggaggcatt 30534

                          
Query: 540   gcccagtttgttt 552
             | |||||||||||
Sbjct: 30533 gtccagtttgttt 30521



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 308   ttgaaccactggctctcagggtcgcag 334
             ||||||||||||||||| |||||||||
Sbjct: 39853 ttgaaccactggctctccgggtcgcag 39827



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  190 bits (96), Expect = 4e-45
 Identities = 258/312 (82%)
 Strand = Plus / Minus

                                                                            
Query: 300      atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359
                |||||| ||||||||||||||||||||| | |||  |||||||| |||| ||||||||||
Sbjct: 24038669 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 24038610

                                                                            
Query: 360      attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419
                |  |||  |||||||||| ||| |||||    ||||||| ||| ||||| || ||||| |
Sbjct: 24038609 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 24038550

                                                                            
Query: 420      tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479
                | |||||||| | ||||||||||||||||||||  ||||||||||||||||| |||| ||
Sbjct: 24038549 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 24038490

                                                                            
Query: 480      atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539
                ||||||||||  | ||||| |||| |||| | ||||| ||||||||| |||  |||||||
Sbjct: 24038489 atttgctgcaatcggtcccaagctgtgcattctcaccgacagacttgacctggaggcatt 24038430

                                                                            
Query: 540      gcccagtttgtttcagcacaagctcatacgtggaggtgtagttccaagcgttcgattcat 599
                | ||||| |||| ||| || | ||| |  || || ||||||||||||||||| |||||||
Sbjct: 24038429 gaccagtgtgttgcagtaccaactcgtgtgttgatgtgtagttccaagcgtttgattcat 24038370

                            
Query: 600      cgcacggaccca 611
                | || |||||||
Sbjct: 24038369 cacatggaccca 24038358



 Score =  121 bits (61), Expect = 3e-24
 Identities = 205/253 (81%)
 Strand = Plus / Minus

                                                                            
Query: 300      atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359
                |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 24033794 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 24033735

                                                                            
Query: 360      attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419
                | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 24033734 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 24033675

                                                                            
Query: 420      tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479
                |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 24033674 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 24033615

                                                                            
Query: 480      atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539
                |||||||||| |  || || ||||||||| | ||||| |||||||| ||||  |||||||
Sbjct: 24033614 atttgctgcaactggtgccaagctttgcattctcaccaacagacttcgcctggaggcatt 24033555

                             
Query: 540      gcccagtttgttt 552
                | |||||||||||
Sbjct: 24033554 gtccagtttgttt 24033542



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 308      ttgaaccactggctctcagggtcgcag 334
                ||||||||||||||||| |||||||||
Sbjct: 24042874 ttgaaccactggctctccgggtcgcag 24042848



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>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete
            sequence
          Length = 90767

 Score =  190 bits (96), Expect = 4e-45
 Identities = 258/312 (82%)
 Strand = Plus / Minus

                                                                        
Query: 300  atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359
            |||||| ||||||||||||||||||||| | |||  |||||||| |||| ||||||||||
Sbjct: 4919 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 4860

                                                                        
Query: 360  attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419
            |  |||  |||||||||| ||| |||||    ||||||| ||| ||||| || ||||| |
Sbjct: 4859 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 4800

                                                                        
Query: 420  tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479
            | |||||||| | ||||||||||||||||||||  ||||||||||||||||| |||| ||
Sbjct: 4799 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 4740

                                                                        
Query: 480  atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539
            ||||||||||  | ||||| |||| |||| | ||||| ||||||||| |||  |||||||
Sbjct: 4739 atttgctgcaatcggtcccaagctgtgcattctcaccgacagacttgacctggaggcatt 4680

                                                                        
Query: 540  gcccagtttgtttcagcacaagctcatacgtggaggtgtagttccaagcgttcgattcat 599
            | ||||| |||| ||| || | ||| |  || || ||||||||||||||||| |||||||
Sbjct: 4679 gaccagtgtgttgcagtaccaactcgtgtgttgatgtgtagttccaagcgtttgattcat 4620

                        
Query: 600  cgcacggaccca 611
            | || |||||||
Sbjct: 4619 cacatggaccca 4608



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 154/190 (81%)
 Strand = Plus / Minus

                                                                       
Query: 300 atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359
           |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 205 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 146

                                                                       
Query: 360 attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419
           | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 145 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 86

                                                                       
Query: 420 tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479
           |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 85  tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 26

                     
Query: 480 atttgctgca 489
           ||||||||||
Sbjct: 25  atttgctgca 16



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 308  ttgaaccactggctctcagggtcgcag 334
            ||||||||||||||||| |||||||||
Sbjct: 9116 ttgaaccactggctctccgggtcgcag 9090



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>ref|XM_472909.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1665

 Score =  121 bits (61), Expect = 3e-24
 Identities = 205/253 (81%)
 Strand = Plus / Minus

                                                                        
Query: 300  atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359
            |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 1582 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 1523

                                                                        
Query: 360  attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419
            | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 1522 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 1463

                                                                        
Query: 420  tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479
            |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 1462 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 1403

                                                                        
Query: 480  atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539
            |||||||||| |  || || ||||||||| | ||||| |||||||| ||||  |||||||
Sbjct: 1402 atttgctgcaactggtgccaagctttgcattctcaccaacagacttcgcctggaggcatt 1343

                         
Query: 540  gcccagtttgttt 552
            | |||||||||||
Sbjct: 1342 gtccagtttgttt 1330



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>dbj|AK109889.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E03, full
            insert sequence
          Length = 1992

 Score =  121 bits (61), Expect = 3e-24
 Identities = 205/253 (81%)
 Strand = Plus / Minus

                                                                        
Query: 300  atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359
            |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 1592 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 1533

                                                                        
Query: 360  attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419
            | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 1532 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 1473

                                                                        
Query: 420  tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479
            |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 1472 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 1413

                                                                        
Query: 480  atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539
            |||||||||| |  || || ||||||||| | ||||| |||||||| ||||  |||||||
Sbjct: 1412 atttgctgcaactggtgccaagctttgcattctcaccaacagacttcgcctggaggcatt 1353

                         
Query: 540  gcccagtttgttt 552
            | |||||||||||
Sbjct: 1352 gtccagtttgttt 1340



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>ref|XM_472911.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1668

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 308  ttgaaccactggctctcagggtcgcag 334
            ||||||||||||||||| |||||||||
Sbjct: 1574 ttgaaccactggctctccgggtcgcag 1548



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>dbj|AK119297.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E08, full
           insert sequence
          Length = 2877

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 308 ttgaaccactggctctcagggtcgcag 334
           ||||||||||||||||| |||||||||
Sbjct: 358 ttgaaccactggctctccgggtcgcag 384



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>ref|NM_001016221.2| Xenopus tropicalis hypothetical protein LOC548975 (LOC548975), mRNA
          Length = 2625

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 474  aacaggatttgctgcagccag 494
            |||||||||||||||||||||
Sbjct: 1540 aacaggatttgctgcagccag 1520



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>gb|AC158384.2| Mus musculus BAC clone RP24-97I24 from chromosome 9, complete sequence
          Length = 163817

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    tttgttttgacagaaaaagaa 68
             |||||||||||||||||||||
Sbjct: 15741 tttgttttgacagaaaaagaa 15761



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>gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome 9, complete sequence
          Length = 175708

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 48    tttgttttgacagaaaaagaa 68
             |||||||||||||||||||||
Sbjct: 38587 tttgttttgacagaaaaagaa 38567



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>emb|CR926305.2| Xenopus tropicalis finished cDNA, clone TEgg078c13
          Length = 2625

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 474  aacaggatttgctgcagccag 494
            |||||||||||||||||||||
Sbjct: 1540 aacaggatttgctgcagccag 1520



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>gb|AC004829.2| Homo sapiens PAC clone RP4-530J23 from 7, complete sequence
          Length = 129837

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 44    gtgatttgttttgacagaaaaaga 67
             |||||||| |||||||||||||||
Sbjct: 62019 gtgatttgctttgacagaaaaaga 61996



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>gb|AC146161.2| Pan troglodytes BAC clone RP43-1G6 from 7, complete sequence
          Length = 205885

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 44    gtgatttgttttgacagaaaaaga 67
             |||||||| |||||||||||||||
Sbjct: 39719 gtgatttgctttgacagaaaaaga 39742



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>gb|AC145091.1| Pan troglodytes BAC clone RP43-12F8 from 7, complete sequence
          Length = 175672

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 44     gtgatttgttttgacagaaaaaga 67
              |||||||| |||||||||||||||
Sbjct: 163884 gtgatttgctttgacagaaaaaga 163907



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>emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chromosome 10, complete
             sequence
          Length = 131465

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    acagaaaaagaaagtgctta 76
             ||||||||||||||||||||
Sbjct: 95286 acagaaaaagaaagtgctta 95267



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>emb|AL021879.3|HS209B9 Human DNA sequence from clone RP1-209B9 on chromosome 20p12 Contains
             the HAO1 gene for hydroxyacid oxidase (glycolate oxidase)
             1, ESTs, STSs and GSSs, complete sequence
          Length = 98569

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    tgacagaaaaagaaagtgct 74
             ||||||||||||||||||||
Sbjct: 45075 tgacagaaaaagaaagtgct 45094



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>emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in linkage group 8,
              complete sequence
          Length = 218866

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     ttttgacagaaaaagaaagt 71
              ||||||||||||||||||||
Sbjct: 214302 ttttgacagaaaaagaaagt 214283



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>gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163077

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    agaggcctcacctggcatgc 287
              ||||||||||||||||||||
Sbjct: 150040 agaggcctcacctggcatgc 150021



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>gb|AF275265.3|AF275265 Mus musculus receptor protein tyrosine phosphatase-rho (Ptprt) gene,
            exons 10 and 11 and partial cds
          Length = 5957

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 268  agaggcctcacctggcatgcctct 291
            ||||||||||||| ||||||||||
Sbjct: 3377 agaggcctcaccttgcatgcctct 3400



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>gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosome 7, complete sequence
          Length = 195204

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    gttttgacagaaaaagaaag 70
             ||||||||||||||||||||
Sbjct: 52418 gttttgacagaaaaagaaag 52437



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>gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosome 7, complete sequence
          Length = 208487

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    gttttgacagaaaaagaaag 70
             ||||||||||||||||||||
Sbjct: 58251 gttttgacagaaaaagaaag 58232



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>emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 in linkage group 7,
             complete sequence
          Length = 197927

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ttttgacagaaaaagaaagt 71
             ||||||||||||||||||||
Sbjct: 37316 ttttgacagaaaaagaaagt 37335



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>gb|BC089118.1| Xenopus laevis mis5p, mRNA (cDNA clone MGC:85070 IMAGE:6866732),
            complete cds
          Length = 2642

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 475  acaggatttgctgcagccag 494
            ||||||||||||||||||||
Sbjct: 1567 acaggatttgctgcagccag 1548



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>gb|U44050.1|XLU44050 Xenopus laevis mis5 mRNA, complete cds
          Length = 2616

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 475  acaggatttgctgcagccag 494
            ||||||||||||||||||||
Sbjct: 1562 acaggatttgctgcagccag 1543



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>emb|AL591586.8| Mouse DNA sequence from clone RP23-126L18 on chromosome 2, complete
              sequence
          Length = 187043

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 268    agaggcctcacctggcatgcctct 291
              ||||||||||||| ||||||||||
Sbjct: 154961 agaggcctcaccttgcatgcctct 154938


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,659,990
Number of Sequences: 3902068
Number of extensions: 4659990
Number of successful extensions: 83435
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83366
Number of HSP's gapped (non-prelim): 61
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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