| Clone Name | rbaal39c09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472910.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1653 Score = 190 bits (96), Expect = 4e-45 Identities = 258/312 (82%) Strand = Plus / Minus Query: 300 atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359 |||||| ||||||||||||||||||||| | ||| |||||||| |||| |||||||||| Sbjct: 1576 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 1517 Query: 360 attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419 | ||| |||||||||| ||| ||||| ||||||| ||| ||||| || ||||| | Sbjct: 1516 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 1457 Query: 420 tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479 | |||||||| | |||||||||||||||||||| ||||||||||||||||| |||| || Sbjct: 1456 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 1397 Query: 480 atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539 |||||||||| | ||||| |||| |||| | ||||| ||||||||| ||| ||||||| Sbjct: 1396 atttgctgcaatcggtcccaagctgtgcattctcaccgacagacttgacctggaggcatt 1337 Query: 540 gcccagtttgtttcagcacaagctcatacgtggaggtgtagttccaagcgttcgattcat 599 | ||||| |||| ||| || | ||| | || || ||||||||||||||||| ||||||| Sbjct: 1336 gaccagtgtgttgcagtaccaactcgtgtgttgatgtgtagttccaagcgtttgattcat 1277 Query: 600 cgcacggaccca 611 | || ||||||| Sbjct: 1276 cacatggaccca 1265
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 190 bits (96), Expect = 4e-45 Identities = 258/312 (82%) Strand = Plus / Minus Query: 300 atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359 |||||| ||||||||||||||||||||| | ||| |||||||| |||| |||||||||| Sbjct: 35648 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 35589 Query: 360 attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419 | ||| |||||||||| ||| ||||| ||||||| ||| ||||| || ||||| | Sbjct: 35588 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 35529 Query: 420 tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479 | |||||||| | |||||||||||||||||||| ||||||||||||||||| |||| || Sbjct: 35528 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 35469 Query: 480 atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539 |||||||||| | ||||| |||| |||| | ||||| ||||||||| ||| ||||||| Sbjct: 35468 atttgctgcaatcggtcccaagctgtgcattctcaccgacagacttgacctggaggcatt 35409 Query: 540 gcccagtttgtttcagcacaagctcatacgtggaggtgtagttccaagcgttcgattcat 599 | ||||| |||| ||| || | ||| | || || ||||||||||||||||| ||||||| Sbjct: 35408 gaccagtgtgttgcagtaccaactcgtgtgttgatgtgtagttccaagcgtttgattcat 35349 Query: 600 cgcacggaccca 611 | || ||||||| Sbjct: 35348 cacatggaccca 35337 Score = 121 bits (61), Expect = 3e-24 Identities = 205/253 (81%) Strand = Plus / Minus Query: 300 atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359 |||||| |||||||||||| |||||||| | ||| | |||||| |||| |||||||||| Sbjct: 30773 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 30714 Query: 360 attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419 | |||| || ||||| || ||||| | || |||||||| ||||| || || || | Sbjct: 30713 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 30654 Query: 420 tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479 |||||||||| | ||||||||||||||||||| |||| ||||| |||||| |||| || Sbjct: 30653 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 30594 Query: 480 atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539 |||||||||| | || || ||||||||| | ||||| |||||||| |||| ||||||| Sbjct: 30593 atttgctgcaactggtgccaagctttgcattctcaccaacagacttcgcctggaggcatt 30534 Query: 540 gcccagtttgttt 552 | ||||||||||| Sbjct: 30533 gtccagtttgttt 30521 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 308 ttgaaccactggctctcagggtcgcag 334 ||||||||||||||||| ||||||||| Sbjct: 39853 ttgaaccactggctctccgggtcgcag 39827
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 190 bits (96), Expect = 4e-45 Identities = 258/312 (82%) Strand = Plus / Minus Query: 300 atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359 |||||| ||||||||||||||||||||| | ||| |||||||| |||| |||||||||| Sbjct: 24038669 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 24038610 Query: 360 attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419 | ||| |||||||||| ||| ||||| ||||||| ||| ||||| || ||||| | Sbjct: 24038609 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 24038550 Query: 420 tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479 | |||||||| | |||||||||||||||||||| ||||||||||||||||| |||| || Sbjct: 24038549 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 24038490 Query: 480 atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539 |||||||||| | ||||| |||| |||| | ||||| ||||||||| ||| ||||||| Sbjct: 24038489 atttgctgcaatcggtcccaagctgtgcattctcaccgacagacttgacctggaggcatt 24038430 Query: 540 gcccagtttgtttcagcacaagctcatacgtggaggtgtagttccaagcgttcgattcat 599 | ||||| |||| ||| || | ||| | || || ||||||||||||||||| ||||||| Sbjct: 24038429 gaccagtgtgttgcagtaccaactcgtgtgttgatgtgtagttccaagcgtttgattcat 24038370 Query: 600 cgcacggaccca 611 | || ||||||| Sbjct: 24038369 cacatggaccca 24038358 Score = 121 bits (61), Expect = 3e-24 Identities = 205/253 (81%) Strand = Plus / Minus Query: 300 atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359 |||||| |||||||||||| |||||||| | ||| | |||||| |||| |||||||||| Sbjct: 24033794 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 24033735 Query: 360 attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419 | |||| || ||||| || ||||| | || |||||||| ||||| || || || | Sbjct: 24033734 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 24033675 Query: 420 tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479 |||||||||| | ||||||||||||||||||| |||| ||||| |||||| |||| || Sbjct: 24033674 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 24033615 Query: 480 atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539 |||||||||| | || || ||||||||| | ||||| |||||||| |||| ||||||| Sbjct: 24033614 atttgctgcaactggtgccaagctttgcattctcaccaacagacttcgcctggaggcatt 24033555 Query: 540 gcccagtttgttt 552 | ||||||||||| Sbjct: 24033554 gtccagtttgttt 24033542 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 308 ttgaaccactggctctcagggtcgcag 334 ||||||||||||||||| ||||||||| Sbjct: 24042874 ttgaaccactggctctccgggtcgcag 24042848
>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete sequence Length = 90767 Score = 190 bits (96), Expect = 4e-45 Identities = 258/312 (82%) Strand = Plus / Minus Query: 300 atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359 |||||| ||||||||||||||||||||| | ||| |||||||| |||| |||||||||| Sbjct: 4919 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 4860 Query: 360 attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419 | ||| |||||||||| ||| ||||| ||||||| ||| ||||| || ||||| | Sbjct: 4859 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 4800 Query: 420 tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479 | |||||||| | |||||||||||||||||||| ||||||||||||||||| |||| || Sbjct: 4799 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 4740 Query: 480 atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539 |||||||||| | ||||| |||| |||| | ||||| ||||||||| ||| ||||||| Sbjct: 4739 atttgctgcaatcggtcccaagctgtgcattctcaccgacagacttgacctggaggcatt 4680 Query: 540 gcccagtttgtttcagcacaagctcatacgtggaggtgtagttccaagcgttcgattcat 599 | ||||| |||| ||| || | ||| | || || ||||||||||||||||| ||||||| Sbjct: 4679 gaccagtgtgttgcagtaccaactcgtgtgttgatgtgtagttccaagcgtttgattcat 4620 Query: 600 cgcacggaccca 611 | || ||||||| Sbjct: 4619 cacatggaccca 4608 Score = 91.7 bits (46), Expect = 3e-15 Identities = 154/190 (81%) Strand = Plus / Minus Query: 300 atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359 |||||| |||||||||||| |||||||| | ||| | |||||| |||| |||||||||| Sbjct: 205 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 146 Query: 360 attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419 | |||| || ||||| || ||||| | || |||||||| ||||| || || || | Sbjct: 145 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 86 Query: 420 tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479 |||||||||| | ||||||||||||||||||| |||| ||||| |||||| |||| || Sbjct: 85 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 26 Query: 480 atttgctgca 489 |||||||||| Sbjct: 25 atttgctgca 16 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 308 ttgaaccactggctctcagggtcgcag 334 ||||||||||||||||| ||||||||| Sbjct: 9116 ttgaaccactggctctccgggtcgcag 9090
>ref|XM_472909.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1665 Score = 121 bits (61), Expect = 3e-24 Identities = 205/253 (81%) Strand = Plus / Minus Query: 300 atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359 |||||| |||||||||||| |||||||| | ||| | |||||| |||| |||||||||| Sbjct: 1582 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 1523 Query: 360 attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419 | |||| || ||||| || ||||| | || |||||||| ||||| || || || | Sbjct: 1522 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 1463 Query: 420 tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479 |||||||||| | ||||||||||||||||||| |||| ||||| |||||| |||| || Sbjct: 1462 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 1403 Query: 480 atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539 |||||||||| | || || ||||||||| | ||||| |||||||| |||| ||||||| Sbjct: 1402 atttgctgcaactggtgccaagctttgcattctcaccaacagacttcgcctggaggcatt 1343 Query: 540 gcccagtttgttt 552 | ||||||||||| Sbjct: 1342 gtccagtttgttt 1330
>dbj|AK109889.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E03, full insert sequence Length = 1992 Score = 121 bits (61), Expect = 3e-24 Identities = 205/253 (81%) Strand = Plus / Minus Query: 300 atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 359 |||||| |||||||||||| |||||||| | ||| | |||||| |||| |||||||||| Sbjct: 1592 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 1533 Query: 360 attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 419 | |||| || ||||| || ||||| | || |||||||| ||||| || || || | Sbjct: 1532 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 1473 Query: 420 tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 479 |||||||||| | ||||||||||||||||||| |||| ||||| |||||| |||| || Sbjct: 1472 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 1413 Query: 480 atttgctgcagccagtcccgagctttgcagtatcacccacagacttggcctcaaggcatt 539 |||||||||| | || || ||||||||| | ||||| |||||||| |||| ||||||| Sbjct: 1412 atttgctgcaactggtgccaagctttgcattctcaccaacagacttcgcctggaggcatt 1353 Query: 540 gcccagtttgttt 552 | ||||||||||| Sbjct: 1352 gtccagtttgttt 1340
>ref|XM_472911.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1668 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 308 ttgaaccactggctctcagggtcgcag 334 ||||||||||||||||| ||||||||| Sbjct: 1574 ttgaaccactggctctccgggtcgcag 1548
>dbj|AK119297.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E08, full insert sequence Length = 2877 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 308 ttgaaccactggctctcagggtcgcag 334 ||||||||||||||||| ||||||||| Sbjct: 358 ttgaaccactggctctccgggtcgcag 384
>ref|NM_001016221.2| Xenopus tropicalis hypothetical protein LOC548975 (LOC548975), mRNA Length = 2625 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 474 aacaggatttgctgcagccag 494 ||||||||||||||||||||| Sbjct: 1540 aacaggatttgctgcagccag 1520
>gb|AC158384.2| Mus musculus BAC clone RP24-97I24 from chromosome 9, complete sequence Length = 163817 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 tttgttttgacagaaaaagaa 68 ||||||||||||||||||||| Sbjct: 15741 tttgttttgacagaaaaagaa 15761
>gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome 9, complete sequence Length = 175708 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 tttgttttgacagaaaaagaa 68 ||||||||||||||||||||| Sbjct: 38587 tttgttttgacagaaaaagaa 38567
>emb|CR926305.2| Xenopus tropicalis finished cDNA, clone TEgg078c13 Length = 2625 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 474 aacaggatttgctgcagccag 494 ||||||||||||||||||||| Sbjct: 1540 aacaggatttgctgcagccag 1520
>gb|AC004829.2| Homo sapiens PAC clone RP4-530J23 from 7, complete sequence Length = 129837 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 gtgatttgttttgacagaaaaaga 67 |||||||| ||||||||||||||| Sbjct: 62019 gtgatttgctttgacagaaaaaga 61996
>gb|AC146161.2| Pan troglodytes BAC clone RP43-1G6 from 7, complete sequence Length = 205885 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 gtgatttgttttgacagaaaaaga 67 |||||||| ||||||||||||||| Sbjct: 39719 gtgatttgctttgacagaaaaaga 39742
>gb|AC145091.1| Pan troglodytes BAC clone RP43-12F8 from 7, complete sequence Length = 175672 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 gtgatttgttttgacagaaaaaga 67 |||||||| ||||||||||||||| Sbjct: 163884 gtgatttgctttgacagaaaaaga 163907
>emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chromosome 10, complete sequence Length = 131465 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 acagaaaaagaaagtgctta 76 |||||||||||||||||||| Sbjct: 95286 acagaaaaagaaagtgctta 95267
>emb|AL021879.3|HS209B9 Human DNA sequence from clone RP1-209B9 on chromosome 20p12 Contains the HAO1 gene for hydroxyacid oxidase (glycolate oxidase) 1, ESTs, STSs and GSSs, complete sequence Length = 98569 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tgacagaaaaagaaagtgct 74 |||||||||||||||||||| Sbjct: 45075 tgacagaaaaagaaagtgct 45094
>emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in linkage group 8, complete sequence Length = 218866 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 ttttgacagaaaaagaaagt 71 |||||||||||||||||||| Sbjct: 214302 ttttgacagaaaaagaaagt 214283
>gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163077 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 agaggcctcacctggcatgc 287 |||||||||||||||||||| Sbjct: 150040 agaggcctcacctggcatgc 150021
>gb|AF275265.3|AF275265 Mus musculus receptor protein tyrosine phosphatase-rho (Ptprt) gene, exons 10 and 11 and partial cds Length = 5957 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 268 agaggcctcacctggcatgcctct 291 ||||||||||||| |||||||||| Sbjct: 3377 agaggcctcaccttgcatgcctct 3400
>gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosome 7, complete sequence Length = 195204 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 gttttgacagaaaaagaaag 70 |||||||||||||||||||| Sbjct: 52418 gttttgacagaaaaagaaag 52437
>gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosome 7, complete sequence Length = 208487 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gttttgacagaaaaagaaag 70 |||||||||||||||||||| Sbjct: 58251 gttttgacagaaaaagaaag 58232
>emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 in linkage group 7, complete sequence Length = 197927 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 ttttgacagaaaaagaaagt 71 |||||||||||||||||||| Sbjct: 37316 ttttgacagaaaaagaaagt 37335
>gb|BC089118.1| Xenopus laevis mis5p, mRNA (cDNA clone MGC:85070 IMAGE:6866732), complete cds Length = 2642 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 acaggatttgctgcagccag 494 |||||||||||||||||||| Sbjct: 1567 acaggatttgctgcagccag 1548
>gb|U44050.1|XLU44050 Xenopus laevis mis5 mRNA, complete cds Length = 2616 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 acaggatttgctgcagccag 494 |||||||||||||||||||| Sbjct: 1562 acaggatttgctgcagccag 1543
>emb|AL591586.8| Mouse DNA sequence from clone RP23-126L18 on chromosome 2, complete sequence Length = 187043 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 agaggcctcacctggcatgcctct 291 ||||||||||||| |||||||||| Sbjct: 154961 agaggcctcaccttgcatgcctct 154938 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,659,990 Number of Sequences: 3902068 Number of extensions: 4659990 Number of successful extensions: 83435 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83366 Number of HSP's gapped (non-prelim): 61 length of query: 633 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 610 effective length of database: 17,143,297,704 effective search space: 10457411599440 effective search space used: 10457411599440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)