ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38n01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016784.1| Zea mays clone Contig617 mRNA sequence 96 8e-17
2gb|AY104354.1| Zea mays PCO108571 mRNA sequence 96 8e-17
3ref|XM_474305.1| Oryza sativa (japonica cultivar-group), predic... 92 1e-15
4emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 92 1e-15
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
6gb|DQ351282.1| Oryza rufipogon unknown gene 92 1e-15
7dbj|AK100753.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 1e-15
8emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 92 1e-15
9ref|XM_368328.1| Magnaporthe grisea 70-15 chromosome VI predicte... 44 0.27
10gb|AC162528.5| Mus musculus BAC clone RP23-4P1 from chromosome 5... 40 4.2
11gb|AC151577.2| Mus musculus BAC clone RP23-371D23 from chromosom... 40 4.2
12gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 4.2
13emb|BX640415.1| Bordetella pertussis strain Tohama I, complete g... 40 4.2
14emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 4.2
15gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 4.2
16gb|AC026443.4| Homo sapiens chromosome 5 clone CTD-2296H22, comp... 40 4.2
17gb|AY129331.1| Mycobacteriophage CJW1, complete genome 40 4.2
18dbj|AK019523.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 40 4.2
19gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 4.2
20gb|AF377927.1|AF377927 Sclerotinia sclerotiorum clone 113-4 micr... 40 4.2
21emb|BX465227.3| Zebrafish DNA sequence from clone RP71-40K24 in ... 40 4.2 
>gb|BT016784.1| Zea mays clone Contig617 mRNA sequence
          Length = 1616

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 97/114 (85%)
 Strand = Plus / Minus

                                                                        
Query: 207  gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggn 266
            |||||| ||||||| ||||||||  ||||||||||||| ||||||||| |||||  | | 
Sbjct: 1285 gaaggaaaccttgacgccgagcaacgccatgagctgggacacgaactctgggtggcctgg 1226

                                                                  
Query: 267  ccacgccgcgcccgtcaccaggttgccgtcngtgaagcaacggtggatcgggtc 320
            ||| || ||||| ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 1225 ccaggctgcgccggtcacaaggttgccatcggtgaagcagcggtggatcgggtc 1172
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>gb|AY104354.1| Zea mays PCO108571 mRNA sequence
          Length = 1633

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 97/114 (85%)
 Strand = Plus / Minus

                                                                        
Query: 207  gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggn 266
            |||||| ||||||| ||||||||  ||||||||||||| ||||||||| |||||  | | 
Sbjct: 1259 gaaggaaaccttgacgccgagcaacgccatgagctgggacacgaactctgggtggcctgg 1200

                                                                  
Query: 267  ccacgccgcgcccgtcaccaggttgccgtcngtgaagcaacggtggatcgggtc 320
            ||| || ||||| ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 1199 ccaggctgcgccggtcacaaggttgccatcggtgaagcagcggtggatcgggtc 1146
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>ref|XM_474305.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1164

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 207  gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggn 266
            |||||||||||||||||| ||||  |||||||||||||  | ||||||||||||  | | 
Sbjct: 1161 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 1102

                                                        
Query: 267  ccacgccgcgcccgtcaccaggttgccgtcngtgaagcaacggt 310
            ||| |||||||| ||||| ||||||||||| |||||||| ||||
Sbjct: 1101 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggt 1058
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>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17,
             complete sequence
          Length = 159894

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 89/104 (85%)
 Strand = Plus / Plus

                                                                         
Query: 207   gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggn 266
             |||||||||||||||||| ||||  |||||||||||||  | ||||||||||||  | | 
Sbjct: 26311 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 26370

                                                         
Query: 267   ccacgccgcgcccgtcaccaggttgccgtcngtgaagcaacggt 310
             ||| |||||||| ||||| ||||||||||| |||||||| ||||
Sbjct: 26371 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggt 26414
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 89/104 (85%)
 Strand = Plus / Plus

                                                                            
Query: 207      gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggn 266
                |||||||||||||||||| ||||  |||||||||||||  | ||||||||||||  | | 
Sbjct: 34301908 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 34301967

                                                            
Query: 267      ccacgccgcgcccgtcaccaggttgccgtcngtgaagcaacggt 310
                ||| |||||||| ||||| ||||||||||| |||||||| ||||
Sbjct: 34301968 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggt 34302011
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>gb|DQ351282.1| Oryza rufipogon unknown gene
          Length = 14907

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 89/104 (85%)
 Strand = Plus / Plus

                                                                        
Query: 207  gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggn 266
            |||||||||||||||||| ||||  |||||||||||||  | ||||||||||||  | | 
Sbjct: 9500 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 9559

                                                        
Query: 267  ccacgccgcgcccgtcaccaggttgccgtcngtgaagcaacggt 310
            ||| |||||||| ||||| ||||||||||| |||||||| ||||
Sbjct: 9560 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggt 9603
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>dbj|AK100753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118M23, full
            insert sequence
          Length = 1368

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 207  gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggn 266
            |||||||||||||||||| ||||  |||||||||||||  | ||||||||||||  | | 
Sbjct: 1221 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 1162

                                                        
Query: 267  ccacgccgcgcccgtcaccaggttgccgtcngtgaagcaacggt 310
            ||| |||||||| ||||| ||||||||||| |||||||| ||||
Sbjct: 1161 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggt 1118
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>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete
             sequence
          Length = 95419

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 89/104 (85%)
 Strand = Plus / Plus

                                                                         
Query: 207   gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggn 266
             |||||||||||||||||| ||||  |||||||||||||  | ||||||||||||  | | 
Sbjct: 74231 gaaggagaccttgatgcctagcaatgccatgagctgggagatgaactccgggtggccagg 74290

                                                         
Query: 267   ccacgccgcgcccgtcaccaggttgccgtcngtgaagcaacggt 310
             ||| |||||||| ||||| ||||||||||| |||||||| ||||
Sbjct: 74291 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggt 74334
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>ref|XM_368328.1| Magnaporthe grisea 70-15 chromosome VI predicted protein
           (MG00916.4) partial mRNA
          Length = 378

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 224 cgagcagggccatgagctgggc 245
           ||||||||||||||||||||||
Sbjct: 40  cgagcagggccatgagctgggc 19
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>gb|AC162528.5| Mus musculus BAC clone RP23-4P1 from chromosome 5, complete sequence
          Length = 219218

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    cagggccatgagctgggcca 247
              ||||||||||||||||||||
Sbjct: 123528 cagggccatgagctgggcca 123509
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>gb|AC151577.2| Mus musculus BAC clone RP23-371D23 from chromosome 5, complete sequence
          Length = 206735

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    cagggccatgagctgggcca 247
              ||||||||||||||||||||
Sbjct: 149931 cagggccatgagctgggcca 149950
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 269     acgccgcgcccgtcaccaggttgc 292
               |||||||||||||||| |||||||
Sbjct: 2199666 acgccgcgcccgtcacgaggttgc 2199643
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>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                         
Query: 254    ccgggtgcgcggnccacgccgcgcccgtcaccaggttgccgtc 296
              |||| ||||||| |||||||| | | || ||||||||||||||
Sbjct: 229168 ccggatgcgcgggccacgccggggcggtgaccaggttgccgtc 229126
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 269    acgccgcgcccgtcaccaggttgc 292
              |||||||||||||||| |||||||
Sbjct: 361289 acgccgcgcccgtcacgaggttgc 361266
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 224    cgagcagggccatgagctgggcca 247
              ||||||||||| ||||||||||||
Sbjct: 206260 cgagcagggccttgagctgggcca 206283
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>gb|AC026443.4| Homo sapiens chromosome 5 clone CTD-2296H22, complete sequence
          Length = 118562

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   gttgcatctgtgttgtatat 166
             ||||||||||||||||||||
Sbjct: 42582 gttgcatctgtgttgtatat 42563
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>gb|AY129331.1| Mycobacteriophage CJW1, complete genome
          Length = 75931

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tgagctgggccacgaactcc 255
             ||||||||||||||||||||
Sbjct: 28815 tgagctgggccacgaactcc 28796
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>dbj|AK019523.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
            library, clone:4833439F03 product:unclassifiable, full
            insert sequence
          Length = 2472

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 228  cagggccatgagctgggcca 247
            ||||||||||||||||||||
Sbjct: 1144 cagggccatgagctgggcca 1125
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 269     acgccgcgcccgtcaccaggttgc 292
               |||||||||||||||| |||||||
Sbjct: 1626998 acgccgcgcccgtcacgaggttgc 1627021
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>gb|AF377927.1|AF377927 Sclerotinia sclerotiorum clone 113-4 microsatellite sequence
          Length = 394

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 155 tgtgttgtatatcatgtgatgaaa 178
           ||||||||||||||||||| ||||
Sbjct: 238 tgtgttgtatatcatgtgaagaaa 215
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>emb|BX465227.3| Zebrafish DNA sequence from clone RP71-40K24 in linkage group 17,
             complete sequence
          Length = 161395

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   tatgttgcatctgtgttgta 163
             ||||||||||||||||||||
Sbjct: 93637 tatgttgcatctgtgttgta 93656


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,867,101
Number of Sequences: 3902068
Number of extensions: 1867101
Number of successful extensions: 37109
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36931
Number of HSP's gapped (non-prelim): 178
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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